mRNA_14322 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156186
Unique NamemRNA_14322
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A836CL49_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL49_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.530e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV 273
            STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV
Sbjct:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV 91          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A7S3HH13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH13_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.960e-25
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV 273
            STAQISIM +NFVTG+V VLAY++LIS+  T+A G  L  +FR FP YN+GEG++ +S++YY+  V  +     DW V GRN+ +M VE V
Sbjct:    7 STAQISIMVINFVTGFVMVLAYYILISVPNTEAVGRQLVHLFRFFPPYNIGEGLINLSSTYYRNSVNGESVGYFDWPVTGRNIVFMLVEAV 97          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A482RV75_9ARCH (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV75_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 2.730e-20
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV 273
            STAQIS+  LNF+TG+V V+AYFV+ +I +TKAA + L  IFR FP YN+GEG + +ST+Y++  +L  +++   W V GR L +M  E +
Sbjct:  737 STAQISLTLLNFMTGFVLVMAYFVMYNIPETKAAAVVLVHIFRFFPAYNIGEGFINLSTTYFENAILGGNRSPFHWEVCGRCLVFMFAEAI 827          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A7S1DA40_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA40_CYCTE)

HSP 1 Score: 89.4 bits (220), Expect = 8.100e-19
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNL 249
            S+AQI++M + F+TG+VFV AYF++ SIE T+    AL P+FR FP YN+GEG + +S++Y+++ +L  D+  LDW V G NL
Sbjct:   51 SSAQIAVMGIVFITGFVFVNAYFIMSSIESTQHLAEALRPVFRYFPAYNVGEGFIQLSSAYWEREILGSDKRPLDWNVTGLNL 133          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A7S2W117_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W117_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.650e-16
Identity = 37/86 (43.02%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYM 258
            S+AQISIMA+ F+TG+V V AYF+L S+E TK     + P+F ++P +N+GEG++G+S +++++ VL + ++   W V GR+L ++
Sbjct:  146 SSAQISIMAIFFLTGFVAVNAYFILDSLENTKYLARRMRPLFLMWPPFNVGEGLIGLSRNFFEREVLRQTKSPFSWKVCGRSLAFL 231          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: B7G9E6_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9E6_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQ-TALDWVVAGR 243
            S+AQI+++ + FVTG+VFV+AYF++ISIE T+     L PIFRIFP YN+G+G + ++ +++++R+   D      W VAG+
Sbjct: 1388 SSAQIAVIGIGFVTGFVFVMAYFIMISIESTEQLAKTLRPIFRIFPGYNVGDGFIQMANAFWERRIQGTDSGRPFSWEVAGK 1469          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A7S3DQC5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQC5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.780e-15
Identity = 34/83 (40.96%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNL 249
            S+AQI+++ + F++G+V V AY+++ SIEKT++    L P+FR++P YN+G+G++ +S +++++ VL ++ + LDW VAG+ L
Sbjct:  816 SSAQIAVIGVIFISGFVAVNAYYIMDSIEKTRSIAQTLRPLFRLWPAYNVGDGLIAMSRAFWEREVLFQENSPLDWDVAGKPL 898          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A7S1VG15_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VG15_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.340e-14
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNL 249
            S+AQI+IM + F+TG+V V AYF++ SIE T+     + P  R  P YN+GEG + +S++Y+++ +L  ++   DW V GRNL
Sbjct:  551 SSAQIAIMGIFFITGFVAVNAYFIMSSIESTQDIAEGMRPGLRTLPAYNVGEGFIQLSSAYWEREILGSEKYPFDWDVCGRNL 633          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: A0A6H5KGR1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.300e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTA--LDWVVAGRNLTYMAVE 267
            S AQISI  +NF++G+ FV+AY VL ++++T         IFR+FP Y LG+G++ VS+ +Y + V+  D+    L W VAGR + YM +E
Sbjct:  117 SAAQISIAGVNFLSGFGFVVAYAVLSTLKRTVKFAAKAQHIFRLFPPYLLGDGLIRVSSEFYVREVMGMDREGGVLAWDVAGRGICYMCLE 207          
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Match: D7G7Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 5.620e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNLGEGMLGVSTSYYKQRVLNKDQTA--LDWVVAGRNLTYMAVE 267
            S AQISI  +NF++G+ FV+AY VL ++++T         IFR+FP Y LG+G++ VS+ +Y + V+  D+    L W VAGR + YM +E
Sbjct: 1583 SAAQISIAGVNFLSGFGFVVAYAVLSTLKRTVKFAAKAQHIFRLFPPYLLGDGLIRVSSEFYVREVMGMDREGGVLAWDVAGRGICYMCLE 1673          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156186 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL49_9STRA3.530e-56100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3HH13_9STRA3.960e-2552.75Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RV75_9ARCH2.730e-2048.35ATP-binding cassette domain-containing protein (Fr... [more]
A0A7S1DA40_CYCTE8.100e-1949.40Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2W117_9STRA1.650e-1643.02Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
B7G9E6_PHATC1.500e-1545.12Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S3DQC5_9STRA2.780e-1540.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1VG15_9STRA3.340e-1443.37Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6H5KGR1_9PHAE5.300e-1342.86ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G7Z8_ECTSI5.620e-1342.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:141486..141758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156186|gw1.143.115.1
DescriptionABC transporter
COG categoryQ
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota,2XE1U@2836|Bacillariophyta
Evalue2.47e-16
Seed ortholog2850.Phatr39708
Hectar predicted targeting categorysignal anchor
TranscriptId156508
TrackFilteredModels1
ProteinId156186
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156186gene_14322Tribonema minus UTEX_B_3156 geneContig_143 141486..141758 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14322_1exon_14322_1Tribonema minus UTEX_B_3156 exonContig_143 141486..141758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14322CDS_14322Tribonema minus UTEX_B_3156 CDSContig_143 141486..141758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156186Trimin1|156186|gw1.143.115.1Tribonema minus UTEX_B_3156 polypeptideContig_143 141486..141758 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14322 ID=mRNA_14322|Name=jgi.p|Trimin1|156186|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_143:141486..141758+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCACGGCTCAAATCTCCATCATGGCGCTCAACTTTGTCACGGGGTGGGT
CTTCGTACTGGCCTACTTTGTGCTCATCAGCATTGAGAAGACCAAAGCAG
CAGGCATGGCACTGGCCCCCATCTTCAGGATCTTCCCCACGTACAACCTG
GGGGAGGGCATGCTGGGTGTGAGCACGTCTTACTACAAACAGCGCGTACT
CAACAAGGACCAGACGGCACTTGACTGGGTCGTGGCTGGCAGAAACCTGA
CCTACATGGCCGTTGAGACGGTG
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protein sequence of jgi.p|Trimin1|156186

>Trimin1|156186|gw1.143.115.1 ID=Trimin1|156186|gw1.143.115.1|Name=jgi.p|Trimin1|156186|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
STAQISIMALNFVTGWVFVLAYFVLISIEKTKAAGMALAPIFRIFPTYNL
GEGMLGVSTSYYKQRVLNKDQTALDWVVAGRNLTYMAVETV
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mRNA from alignment at Contig_143:141486..141758+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14322 ID=mRNA_14322|Name=jgi.p|Trimin1|156186|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_143:141486..141758+ (Tribonema minus UTEX_B_3156 )
AGCACGGCTCAAATCTCCATCATGGCGCTCAACTTTGTCACGGGGTGGGT CTTCGTACTGGCCTACTTTGTGCTCATCAGCATTGAGAAGACCAAAGCAG CAGGCATGGCACTGGCCCCCATCTTCAGGATCTTCCCCACGTACAACCTG GGGGAGGGCATGCTGGGTGTGAGCACGTCTTACTACAAACAGCGCGTACT CAACAAGGACCAGACGGCACTTGACTGGGTCGTGGCTGGCAGAAACCTGA CCTACATGGCCGTTGAGACGGTG
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Coding sequence (CDS) from alignment at Contig_143:141486..141758+

>mRNA_14322 ID=mRNA_14322|Name=jgi.p|Trimin1|156186|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_143:141486..141758+ (Tribonema minus UTEX_B_3156 )
AGCACGGCTCAAATCTCCATCATGGCGCTCAACTTTGTCACGGGGTGGGT
CTTCGTACTGGCCTACTTTGTGCTCATCAGCATTGAGAAGACCAAAGCAG
CAGGCATGGCACTGGCCCCCATCTTCAGGATCTTCCCCACGTACAACCTG
GGGGAGGGCATGCTGGGTGTGAGCACGTCTTACTACAAACAGCGCGTACT
CAACAAGGACCAGACGGCACTTGACTGGGTCGTGGCTGGCAGAAACCTGA
CCTACATGGCCGTTGAGACGGTG
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