Trimin1|353036|estExt_Genemark1.C_Ctg_1410039 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353036
Unique NameTrimin1|353036|estExt_Genemark1.C_Ctg_1410039
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length271
Homology
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 551 bits (1420), Expect = 1.670e-198
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 270
            MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL
Sbjct:    1 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 270          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.340e-79
Identity = 119/185 (64.32%), Postives = 143/185 (77.30%), Query Frame = 0
Query:   78 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 261
            ++SCP LVLNADYQPLSYLPLSLW WQ+ IKAV+ ++VVVLAT+ DR VRS +V ++LPSVIALK +VN H   P FTRRNL+LRD +QC YC K F   +LSFDHV P+KLGG  +W NVVT+C RCNN K DCHP+ L  IGM L K P  PTF +LQ +ARRYPP  IH+TW +YLY++S I
Sbjct:  135 IDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEI 319          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7R9UEZ0_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ0_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.060e-73
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 0
Query:   31 VWRATSPMTMKQRSSGDFRVKQEECPGVAEGSA------------ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDS 259
            VW  +S  + K +S       Q   PG  E S             E E+   + R F SL++CPALVLNADYQPLSY+PLSLW WQE IKAV + +V V+  + D  + + + E+ LPSVIALK YV    KVP+FTRRNLYLRD Y+CAYC++ F +  LS+DHV PR  GG TSW NVVTSC  CN  KG+ HP  L  IGMRL   P  PT Y+LQ QAR+YPP+L HKTW  +L Y +
Sbjct:   96 VWMTSSYRSKKGKSRSPDMF-QHYHPGSQEASKPFAAHSEMAKEIEAEVEKKSSRHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKAVLLGKVSVVERYPDVKIHTIDQEIPLPSVIALKEYVKPDHKVPAFTRRNLYLRDNYRCAYCARYFYSQQLSYDHVLPRFYGGSTSWDNVVTSCTDCNGRKGNLHPSKLHEIGMRLLVQPKRPTSYQLQQQARKYPPRLKHKTWEMWLSYSA 336          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7S1XLE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE6_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.110e-72
Identity = 114/200 (57.00%), Postives = 142/200 (71.00%), Query Frame = 0
Query:   64 ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIE 262
            E E+   +   F SL++CPALVLNADYQPLSY+PLSLW WQE IK+V + +V V+A + D ++ + + E+ LPSVIALK YV    K P+FTRRNLYLRD Y+CAYC++ F + +LS+DHV PR  GG T+W NVVT C  CN  KG+ HP  L  IGMRL K P  PT Y+LQ QAR+YPP+L H TW  +L Y SA E
Sbjct:  140 EAEVVRKSSEHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKSVLLGKVNVVAHYNDIFIHTIDEEIPLPSVIALKDYVKPDHKTPAFTRRNLYLRDNYRCAYCARYFYSQELSYDHVMPRFYGGGTNWENVVTCCVDCNGRKGNVHPNKLQDIGMRLLKKPTKPTSYQLQQQARKYPPRLRHSTWESWLGYTSADE 339          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7S2S5X4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X4_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.440e-72
Identity = 107/194 (55.15%), Postives = 141/194 (72.68%), Query Frame = 0
Query:   75 FRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDE 268
            F +LE CP LVLNAD+QPLSY+PLS+W WQ+AIKAV+ +RVVV+A ++  VRSA+V +++PSVIALK YV Q    P+FTRRN++LRD Y C YC    Q   L+FDHV PR  GG TSW NVVT+CHRCNN K D  P+ L  +G+ L + P +P+ YELQ  AR++PPK++H TW +YL +D +   +  +E
Sbjct:  206 FNNLEQCPVLVLNADFQPLSYIPLSIWSWQDAIKAVFAERVVVVANYEHEVRSASVAVQVPSVIALKQYVPQARATPTFTRRNVFLRDSYCCQYCGTCAQTQHLTFDHVLPRSKGGDTSWNNVVTACHRCNNKKKDMMPQQLHHLGLSLLREPRVPSHYELQAAARKFPPKVMHHTWRDYLAWDESASKKRGEE 399          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 220 bits (560), Expect = 6.220e-69
Identity = 97/186 (52.15%), Postives = 141/186 (75.81%), Query Frame = 0
Query:   78 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 263
            +++CPALVLNADY+PLSY PLSLW WQE +KAV++DRV ++A +++ VRS + +++LPSVI+LK YV  + + P+FTR N++LRDG+ C YC K F   DL+FDHV P+  GG T+WTNV+T+C  CN  KG+   + ++ +GM L   P +PT YELQN  RRYPP  +H++W+++LY+DS +++
Sbjct:    3 VDTCPALVLNADYRPLSYFPLSLWSWQETVKAVFLDRVHIVAEYEQEVRSPSWQMRLPSVISLKRYVQSNRR-PAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSELDS 184          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A316G9X3_9RHOB (5-methylcytosine-specific restriction endonuclease McrA n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316G9X3_9RHOB)

HSP 1 Score: 219 bits (558), Expect = 1.680e-68
Identity = 106/191 (55.50%), Postives = 137/191 (71.73%), Query Frame = 0
Query:   73 REFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 263
            RE  SL + PALVLNADY+PLSY PLSLWPWQEA+KA W+DRV ++A +D  VRS + E+++PSV+ LK YV    +V +FTR NL+LRD ++C YC  +   GDL+FDHV PR  GG TSW NVV +C  CN  KG    KSLSR GM L +AP  P   EL+NQ R++PP  +H+TW ++LY+D+ +EA
Sbjct:   11 REPNSLRNHPALVLNADYRPLSYYPLSLWPWQEAVKAAWLDRVQIIAEYDEVVRSPSTEIRIPSVVVLKDYVKPQKRV-AFTRFNLFLRDEFRCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSSCNLRKG---AKSLSRSGMSLLRAPSRPAAEELRNQGRKFPPNHLHETWLDFLYWDAELEA 194          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A2W5BYX0_9PROT (HNH endonuclease n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5BYX0_9PROT)

HSP 1 Score: 218 bits (556), Expect = 3.600e-68
Identity = 102/188 (54.26%), Postives = 134/188 (71.28%), Query Frame = 0
Query:   76 RSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 263
            R+LE CPALVLNAD++PLSY PLS+WPWQEA+KA++ D V VL+ +DR VRS  +ELKLPSV+ALK YV    K P+FTR N++LRD + C YC + F+  DL+FDHV PR  GG TSWTN+VT+C  CN  KG   P+     GM     P  P  +ELQ + R++PP  +HK+W ++LY+DS +E+
Sbjct:    5 RTLEQCPALVLNADFRPLSYYPLSVWPWQEAVKALFRDSVTVLSEYDRVVRSPGLELKLPSVLALKEYVRADRK-PAFTRFNVFLRDEWHCQYCGEPFRTNDLTFDHVIPRSRGGKTSWTNIVTACRCCNTIKGHKLPRD---CGMFPITEPVQPDIFELQEKGRKFPPNFLHKSWGDFLYWDSELES 188          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A1J4RGG8_9PROT (HNH endonuclease n=1 Tax=Alphaproteobacteria bacterium CG1_02_46_17 TaxID=1803508 RepID=A0A1J4RGG8_9PROT)

HSP 1 Score: 218 bits (554), Expect = 5.210e-68
Identity = 98/184 (53.26%), Postives = 134/184 (72.83%), Query Frame = 0
Query:   78 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 261
            LE CPAL+LNAD++PLSY PLS+WPWQEA+KA++ D VVV++ +DR VRS   ELKLPSV+ALK YV    + P+FTR N++LRD +QC YC+  F+  +L+FDHV PR  GG TSWTN+V SC  CN  KG   P+    I +R   +P  P+ YELQ++ R++PP  +H++W ++LY+DS +
Sbjct:    4 LERCPALILNADFRPLSYYPLSVWPWQEAVKAIFRDSVVVVSEYDRVVRSPQTELKLPSVLALKEYVPM-TRSPAFTRFNVFLRDAWQCQYCAGHFRTDELTFDHVVPRSRGGRTSWTNIVASCQSCNKQKGSDLPEECGMIPLR---SPRQPSIYELQDRGRKFPPNFLHQSWMDFLYWDSEL 183          
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: UPI001CD5F9EA (HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 TaxID=2854029 RepID=UPI001CD5F9EA)

HSP 1 Score: 217 bits (553), Expect = 1.090e-67
Identity = 104/204 (50.98%), Postives = 143/204 (70.10%), Query Frame = 0
Query:   60 EGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 263
            + ++E+E   +  RE  +L   PALVLNADY+PLSY PLSLWPWQEA+KAVW+DRV ++A +D YV S +  +++PSV+ L+ YV    +V +FTR NL+LRDG+ C YC  +   GDL+FDHV PR  GG TSW NVV +C RCN  KG    KSL + G+ L +AP  P   EL+N+ R++PP  +H++W ++LY+DS +EA
Sbjct:    2 QATSEIEFRTSFVREPGALRHNPALVLNADYRPLSYYPLSLWPWQEAVKAVWLDRVQIVAEYDDYVHSPSTSIRIPSVVVLRDYVKPQKRV-AFTRFNLFLRDGFSCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSRCNLRKGS---KSLRQSGLSLRRAPRQPEAEELRNRGRQFPPNHLHESWVDFLYWDSELEA 198          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK35_9STRA1.670e-198100.00HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
D8LRG1_ECTSI1.340e-7964.32HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A7R9UEZ0_9STRA6.060e-7351.65Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XLE6_9STRA1.110e-7257.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S5X4_9STRA2.440e-7255.15Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2E4F2L9_9PROT6.220e-6952.15HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A316G9X3_9RHOB1.680e-6855.505-methylcytosine-specific restriction endonuclease... [more]
A0A2W5BYX0_9PROT3.600e-6854.26HNH endonuclease n=1 Tax=Micavibrio aeruginosavoru... [more]
A0A1J4RGG8_9PROT5.210e-6853.26HNH endonuclease n=1 Tax=Alphaproteobacteria bacte... [more]
UPI001CD5F9EA1.090e-6750.98HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003615HNH nucleaseSMARTSM00507HNH_5coord: 153..206
e-value: 1.4E-10
score: 51.1
IPR003615HNH nucleaseCDDcd00085HNHccoord: 156..209
e-value: 4.51361E-12
score: 57.8667
IPR029471HNH endonuclease 5PFAMPF14279HNH_5coord: 166..218
e-value: 6.6E-15
score: 54.7
NoneNo IPR availableGENE3D1.10.30.50coord: 143..228
e-value: 7.1E-19
score: 69.4
NoneNo IPR availablePANTHERPTHR33877:SF2SLL1193 PROTEINcoord: 42..256
NoneNo IPR availablePANTHERPTHR33877SLL1193 PROTEINcoord: 42..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:238432..245436 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353036mRNA_13383Tribonema minus UTEX_B_3156 mRNAContig_141 237560..245600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353036|estExt_Genemark1.C_Ctg_1410039 ID=Trimin1|353036|estExt_Genemark1.C_Ctg_1410039|Name=jgi.p|Trimin1|353036|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRV
KQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSL
WPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKV
PSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTS
CHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKT
WAEYLYYDSAIEARLQDEQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003615HNH_nuc
IPR029471HNH_5