mRNA_13383 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353036
Unique NamemRNA_13383
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 554 bits (1428), Expect = 3.210e-197
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 3 
Query:  165 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 974
            MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL
Sbjct:    1 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 270
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 8.650e-78
Identity = 119/185 (64.32%), Postives = 143/185 (77.30%), Query Frame = 3 
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 947
            ++SCP LVLNADYQPLSYLPLSLW WQ+ IKAV+ ++VVVLAT+ DR VRS +V ++LPSVIALK +VN H   P FTRRNL+LRD +QC YC K F   +LSFDHV P+KLGG  +W NVVT+C RCNN K DCHP+ L  IGM L K P  PTF +LQ +ARRYPP  IH+TW +YLY++S I
Sbjct:  135 IDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEI 319
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7R9UEZ0_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 4.940e-71
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 3 
Query:  255 VWRATSPMTMKQRSSGDFRVKQEECPGVAEGSA------------ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDS 941
            VW  +S  + K +S       Q   PG  E S             E E+   + R F SL++CPALVLNADYQPLSY+PLSLW WQE IKAV + +V V+  + D  + + + E+ LPSVIALK YV    KVP+FTRRNLYLRD Y+CAYC++ F +  LS+DHV PR  GG TSW NVVTSC  CN  KG+ HP  L  IGMRL   P  PT Y+LQ QAR+YPP+L HKTW  +L Y +
Sbjct:   96 VWMTSSYRSKKGKSRSPDMF-QHYHPGSQEASKPFAAHSEMAKEIEAEVEKKSSRHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKAVLLGKVSVVERYPDVKIHTIDQEIPLPSVIALKEYVKPDHKVPAFTRRNLYLRDNYRCAYCARYFYSQQLSYDHVLPRFYGGSTSWDNVVTSCTDCNGRKGNLHPSKLHEIGMRLLVQPKRPTSYQLQQQARKYPPRLKHKTWEMWLSYSA 336
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7S1XLE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE6_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.380e-71
Identity = 114/200 (57.00%), Postives = 142/200 (71.00%), Query Frame = 3 
Query:  354 ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIE 950
            E E+   +   F SL++CPALVLNADYQPLSY+PLSLW WQE IK+V + +V V+A + D ++ + + E+ LPSVIALK YV    K P+FTRRNLYLRD Y+CAYC++ F + +LS+DHV PR  GG T+W NVVT C  CN  KG+ HP  L  IGMRL K P  PT Y+LQ QAR+YPP+L H TW  +L Y SA E
Sbjct:  140 EAEVVRKSSEHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKSVLLGKVNVVAHYNDIFIHTIDEEIPLPSVIALKDYVKPDHKTPAFTRRNLYLRDNYRCAYCARYFYSQELSYDHVMPRFYGGGTNWENVVTCCVDCNGRKGNVHPNKLQDIGMRLLKKPTKPTSYQLQQQARKYPPRLRHSTWESWLGYTSADE 339
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A7S2S5X4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X4_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.410e-70
Identity = 107/194 (55.15%), Postives = 141/194 (72.68%), Query Frame = 3 
Query:  387 FRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDE 968
            F +LE CP LVLNAD+QPLSY+PLS+W WQ+AIKAV+ +RVVV+A ++  VRSA+V +++PSVIALK YV Q    P+FTRRN++LRD Y C YC    Q   L+FDHV PR  GG TSW NVVT+CHRCNN K D  P+ L  +G+ L + P +P+ YELQ  AR++PPK++H TW +YL +D +   +  +E
Sbjct:  206 FNNLEQCPVLVLNADFQPLSYIPLSIWSWQDAIKAVFAERVVVVANYEHEVRSASVAVQVPSVIALKQYVPQARATPTFTRRNVFLRDSYCCQYCGTCAQTQHLTFDHVLPRSKGGDTSWNNVVTACHRCNNKKKDMMPQQLHHLGLSLLREPRVPSHYELQAAARKFPPKVMHHTWRDYLAWDESASKKRGEE 399
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 221 bits (562), Expect = 3.130e-67
Identity = 97/186 (52.15%), Postives = 141/186 (75.81%), Query Frame = 3 
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            +++CPALVLNADY+PLSY PLSLW WQE +KAV++DRV ++A +++ VRS + +++LPSVI+LK YV  + + P+FTR N++LRDG+ C YC K F   DL+FDHV P+  GG T+WTNV+T+C  CN  KG+   + ++ +GM L   P +PT YELQN  RRYPP  +H++W+++LY+DS +++
Sbjct:    3 VDTCPALVLNADYRPLSYFPLSLWSWQETVKAVFLDRVHIVAEYEQEVRSPSWQMRLPSVISLKRYVQSNRR-PAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSELDS 184
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A316G9X3_9RHOB (5-methylcytosine-specific restriction endonuclease McrA n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316G9X3_9RHOB)

HSP 1 Score: 220 bits (560), Expect = 8.400e-67
Identity = 106/191 (55.50%), Postives = 137/191 (71.73%), Query Frame = 3 
Query:  381 REFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            RE  SL + PALVLNADY+PLSY PLSLWPWQEA+KA W+DRV ++A +D  VRS + E+++PSV+ LK YV    +V +FTR NL+LRD ++C YC  +   GDL+FDHV PR  GG TSW NVV +C  CN  KG    KSLSR GM L +AP  P   EL+NQ R++PP  +H+TW ++LY+D+ +EA
Sbjct:   11 REPNSLRNHPALVLNADYRPLSYYPLSLWPWQEAVKAAWLDRVQIIAEYDEVVRSPSTEIRIPSVVVLKDYVKPQKRV-AFTRFNLFLRDEFRCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSSCNLRKG---AKSLSRSGMSLLRAPSRPAAEELRNQGRKFPPNHLHETWLDFLYWDAELEA 194
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A2W5BYX0_9PROT (HNH endonuclease n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5BYX0_9PROT)

HSP 1 Score: 219 bits (558), Expect = 1.790e-66
Identity = 102/188 (54.26%), Postives = 134/188 (71.28%), Query Frame = 3 
Query:  390 RSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            R+LE CPALVLNAD++PLSY PLS+WPWQEA+KA++ D V VL+ +DR VRS  +ELKLPSV+ALK YV    K P+FTR N++LRD + C YC + F+  DL+FDHV PR  GG TSWTN+VT+C  CN  KG   P+     GM     P  P  +ELQ + R++PP  +HK+W ++LY+DS +E+
Sbjct:    5 RTLEQCPALVLNADFRPLSYYPLSVWPWQEAVKALFRDSVTVLSEYDRVVRSPGLELKLPSVLALKEYVRADRK-PAFTRFNVFLRDEWHCQYCGEPFRTNDLTFDHVIPRSRGGKTSWTNIVTACRCCNTIKGHKLPRD---CGMFPITEPVQPDIFELQEKGRKFPPNFLHKSWGDFLYWDSELES 188
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: A0A1J4RGG8_9PROT (HNH endonuclease n=1 Tax=Alphaproteobacteria bacterium CG1_02_46_17 TaxID=1803508 RepID=A0A1J4RGG8_9PROT)

HSP 1 Score: 218 bits (556), Expect = 2.570e-66
Identity = 98/184 (53.26%), Postives = 134/184 (72.83%), Query Frame = 3 
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 947
            LE CPAL+LNAD++PLSY PLS+WPWQEA+KA++ D VVV++ +DR VRS   ELKLPSV+ALK YV    + P+FTR N++LRD +QC YC+  F+  +L+FDHV PR  GG TSWTN+V SC  CN  KG   P+    I +R   +P  P+ YELQ++ R++PP  +H++W ++LY+DS +
Sbjct:    4 LERCPALILNADFRPLSYYPLSVWPWQEAVKAIFRDSVVVVSEYDRVVRSPQTELKLPSVLALKEYVPM-TRSPAFTRFNVFLRDAWQCQYCAGHFRTDELTFDHVVPRSRGGRTSWTNIVASCQSCNKQKGSDLPEECGMIPLR---SPRQPSIYELQDRGRKFPPNFLHQSWMDFLYWDSEL 183
[Close]
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Match: UPI001CD5F9EA (HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 TaxID=2854029 RepID=UPI001CD5F9EA)

HSP 1 Score: 218 bits (555), Expect = 5.380e-66
Identity = 104/204 (50.98%), Postives = 143/204 (70.10%), Query Frame = 3 
Query:  342 EGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            + ++E+E   +  RE  +L   PALVLNADY+PLSY PLSLWPWQEA+KAVW+DRV ++A +D YV S +  +++PSV+ L+ YV    +V +FTR NL+LRDG+ C YC  +   GDL+FDHV PR  GG TSW NVV +C RCN  KG    KSL + G+ L +AP  P   EL+N+ R++PP  +H++W ++LY+DS +EA
Sbjct:    2 QATSEIEFRTSFVREPGALRHNPALVLNADYRPLSYYPLSLWPWQEAVKAVWLDRVQIVAEYDDYVHSPSTSIRIPSVVVLRDYVKPQKRV-AFTRFNLFLRDGFSCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSRCNLRKGS---KSLRQSGLSLRRAPRQPEAEELRNRGRQFPPNHLHESWVDFLYWDSELEA 198
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353036 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK35_9STRA3.210e-197100.00HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
D8LRG1_ECTSI8.650e-7864.32HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A7R9UEZ0_9STRA4.940e-7151.65Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XLE6_9STRA6.380e-7157.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S5X4_9STRA1.410e-7055.15Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2E4F2L9_9PROT3.130e-6752.15HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A316G9X3_9RHOB8.400e-6755.505-methylcytosine-specific restriction endonuclease... [more]
A0A2W5BYX0_9PROT1.790e-6654.26HNH endonuclease n=1 Tax=Micavibrio aeruginosavoru... [more]
A0A1J4RGG8_9PROT2.570e-6653.26HNH endonuclease n=1 Tax=Alphaproteobacteria bacte... [more]
UPI001CD5F9EA5.380e-6650.98HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:237560..245600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353036|estExt_Genemark1.C_Ctg_1410039
DescriptionHNH endonuclease
COG categoryV
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1403@1|root,2QQI3@2759|Eukaryota
Evalue2.19e-80
Seed ortholog2880.D8LRG1
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHNH endonuclease family protein
Ec32 orthologEc-18_004400.1
TranscriptId353358
TrackFilteredModels1
ProteinId353036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353036gene_13383Tribonema minus UTEX_B_3156 geneContig_141 237560..245600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353036Trimin1|353036|estExt_Genemark1.C_Ctg_1410039Tribonema minus UTEX_B_3156 polypeptideContig_141 238432..245436 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13383_14exon_13383_14Tribonema minus UTEX_B_3156 exonContig_141 237560..237807 -
exon_13383_13exon_13383_13Tribonema minus UTEX_B_3156 exonContig_141 238404..238530 -
exon_13383_12exon_13383_12Tribonema minus UTEX_B_3156 exonContig_141 239012..239101 -
exon_13383_11exon_13383_11Tribonema minus UTEX_B_3156 exonContig_141 239756..239801 -
exon_13383_10exon_13383_10Tribonema minus UTEX_B_3156 exonContig_141 240068..240135 -
exon_13383_9exon_13383_9Tribonema minus UTEX_B_3156 exonContig_141 240723..240785 -
exon_13383_8exon_13383_8Tribonema minus UTEX_B_3156 exonContig_141 241066..241105 -
exon_13383_7exon_13383_7Tribonema minus UTEX_B_3156 exonContig_141 241536..241574 -
exon_13383_6exon_13383_6Tribonema minus UTEX_B_3156 exonContig_141 243233..243361 -
exon_13383_5exon_13383_5Tribonema minus UTEX_B_3156 exonContig_141 243749..243793 -
exon_13383_4exon_13383_4Tribonema minus UTEX_B_3156 exonContig_141 244295..244335 -
exon_13383_3exon_13383_3Tribonema minus UTEX_B_3156 exonContig_141 244920..244958 -
exon_13383_2exon_13383_2Tribonema minus UTEX_B_3156 exonContig_141 245155..245197 -
exon_13383_1exon_13383_1Tribonema minus UTEX_B_3156 exonContig_141 245366..245600 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13383UTR3_13383Tribonema minus UTEX_B_3156 three_prime_UTRContig_141 238404..238431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13383CDS_13383Tribonema minus UTEX_B_3156 CDSContig_141 245366..245436 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13383UTR5_13383Tribonema minus UTEX_B_3156 five_prime_UTRContig_141 245437..245600 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13383 ID=mRNA_13383|Name=jgi.p|Trimin1|353036|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1253bp|location=Sequence derived from alignment at Contig_141:237560..245600- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGCAGGACGAAGGCGAGGGATTGGGCGACGGGAGGCGGCTTGTCGTG
TCGCCCGGCTCTCTCAGCTCAGATCCTAGCCGGTGCCTGGTCTGAAGTTG
AGCGCCCGGCCTGGAACAGAGAGCGCTGCCACTTTCGGGGGCGAATCTGT
CTTTAGGCAGCAAGATGAGTGTGCGCCTGCTGGCGCTAGTCACGGTGCTG
GCGCTTGTGATGAACAGTGAGGCTTTTTCAACCAGGGCCGCCATCACCTA
TGGCGTCTGGCGTGCCACCTCCCCGATGACCATGAAGCAACGATCTTCTG
GCGACTTCAGGGTCAAGCAGGAGGAGTGCCCGGGGGTGGCGGAGGGCTCT
GCTGAGCTAGAGCTCTATGACAACACTGACAGGGAGTTCCGCAGCTTGGA
GAGTTGCCCGGCGCTGGTGCTGAATGCGGACTATCAGCCCCTGAGCTACT
TGCCGCTGAGCTTGTGGCCTTGGCAGGAGGCTATCAAGGCGGTGTGGATG
GACAGGGTGGTGGTGCTGGCTACTCATGACAGGTATGTTAGGAGCGCCAA
TGTGGAGCTCAAGCTGCCGAGCGTCATCGCCTTGAAGGGGTACGTCAACC
AGCACGCCAAGGTGCCCAGCTTTACGCGGAGGAATCTTTACCTTCGTGAT
GGCTATCAGTGTGCGTACTGCTCGAAGCAGTTCCAAGCTGGGGACTTGAG
CTTCGACCACGTAACCCCCAGGAAACTGGGCGGACCGACCAGCTGGACCA
ATGTCGTGACCAGCTGCCACCGCTGCAATAACGCCAAGGGTGACTGCCAC
CCTAAGAGCTTGTCAAGAATAGGCATGCGCCTCAACAAGGCTCCGCACAT
CCCGACCTTCTATGAGCTGCAAAACCAGGCGCGAAGGTACCCCCCAAAAC
TGATTCACAAGACGTGGGCGGAGTACCTGTATTACGACTCTGCAATTGAA
GCGCGATTGCAGGACGAGCAGCTATAGCCATTGCTCCGTTTTTGGGGGAA
TAAATGTGCAGAAGGGGCCAATCACCACCAGAGTCAAGTGTACAAAACGC
GGAAATCATCTGCAACAGGTACAAAGAGGGGGCGACTGGACAAACGCACA
GTACAAAGGGGGGGGGATACCGTGAAGGCTGCAAACGATTCTCGACGGCA
TCACCTTTGCAAGAACGGAAATTACAGAAGCAGGCGGCGTGTGCGCCTGA
ATTAACCAGTTGAGTTTGCTGGCGCGGTTGTCGCGCAAGTGAGCATTGCA
GGG
back to top

protein sequence of jgi.p|Trimin1|353036

>Trimin1|353036|estExt_Genemark1.C_Ctg_1410039 ID=Trimin1|353036|estExt_Genemark1.C_Ctg_1410039|Name=jgi.p|Trimin1|353036|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRV
KQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSL
WPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKV
PSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTS
CHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKT
WAEYLYYDSAIEARLQDEQL*
back to top

mRNA from alignment at Contig_141:237560..245600-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13383 ID=mRNA_13383|Name=jgi.p|Trimin1|353036|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8041bp|location=Sequence derived from alignment at Contig_141:237560..245600- (Tribonema minus UTEX_B_3156 )
CAGCGCAGGACGAAGGCGAGGGATTGGGCGACGGGAGGCGGCTTGTCGTG
TCGCCCGGCTCTCTCAGCTCAGATCCTAGCCGGTGCCTGGTCTGAAGTTG
AGCGCCCGGCCTGGAACAGAGAGCGCTGCCACTTTCGGGGGCGAATCTGT
CTTTAGGCAGCAAGATGAGTGTGCGCCTGCTGGCGCTAGTCACGGTGCTG
GCGCTTGTGATGAACAGTGAGGCTTTTTCAACCAGGTGAGCTCGGCGTTG
GCAGTAAACTGGCCCTGCTTCACGCAATGGCGGAGATCTAGCAGTTCTAC
AGTGTGGTTTATTCAAACCTCGGAAACTCTCTCACGCGACGACATGCGAT
CCTCACTGTGTCACCGCACCAATGTCGTTGCAACCTCTGTGCTTGCATCG
TAGGGCCGCCATCACCTATGGCGTCTGGCGTGCCACCTCCCCGATGGTAA
GTTCTTGACAGCTCACATTCAAATGTTGCTTTTTGCTGTTGCGGCACCCG
CTGCAGCGCGTGTACGTTATGACTGACTGACGGCTATGGCGCGTGCATTT
ATGCACTAGCTTTCATCGTGATCAGGCAGCAGCGCTTGCAGTTCAGTGCT
GACCGCCACGTGTCTGTGATCTTGCTGCCACTGCGTTTGCAGACCATGAA
GCAACGATCTTCTGGCGACTTCAGGGTCAAGGTATGTGTATTTATGAATC
AGTATAAGATTACAAGCACCCATGCATGAACTGTTGAGCTGTCATGGCAT
GCATGCCATTGTTTGTGATTTTCGAAGTTGCTTCAATTACCATAATCCGG
CGTATAGCGTCGAGCAACCGCTATTGTTTCCTCAAGGTGAAGGCGTCTAC
CGCGTGTTTATCCAGTTGTAAATCCGACTGCATTTATCGCATCCCTCTTG
TTCTGGCGGATGGCAAAAATCACAGGTCACTCACTTGCTGTCACAGATAG
GACACTCCCAAATACAGGTTGGACAGCACATGCTGACCGCGCTCGGAACG
CGGGGAGCCAACGGCTACATCATCTCACACGGCCCACCTTCTTCTATCAA
TGTTGTGCCTTGCAGCGGACGCCTAAGAGCAAGCCGTCTTATCGGCGGCC
GTCTCCATACCCCTATGGCGAGCCCAGCAGTGTGGAGGACGTATCCAGGC
AAGCAGGCATAACATAAGAGTCGCTGATGGGGGAGCAGCCATGTGCAGCA
ATGGCCTACTGGGGGGGGGCGGGGGGGGGGTCAATTGGGCGTTTGCACCA
TTGCATGGACTGCAGCAGGAGGAGTGCCCGGGGGTGGCGGAGGGCTCTGC
TGAGCTGTGCTGTGCACCAGCAACTCAAGGGGGGGGCAGGGAGGTCAATG
GCATCAGTGTGCTAAGCTTTGCTGGAGATGATGTTTTGGCCAGGGGTGAC
ATGGTGAAGTGACGGCATGCCAGTGCGAAGTTGTTTTGCTTTTTTTGAAG
AGATTATGGCAAGAGAAAAAACAAATTTCGCCGTTTGGAACATGTGACCC
TTGAATCAGACAAGTGGATGTGCCATTCAGGTTCTCGTGTCAGGTCTGCT
ACAGTATCCTAGATGCGGCCATTGACGTCTCGTCAACAAACAAAAGTTTA
GAGATCTTATACTTCAAGTATGTGAATGCTGTGGATGTTGGGAAGGGGTG
GGGCAATTGCTGTTCACCAATTCCATTGTTTTAATCTCGCAGTACCAGCA
TCCGCTAACAGAGCAACGGAGTTGCCATCTGCCATACGGTGAGCTCCAGA
TTTTTGCTCAACTGACATCACTGTACTGTCTTATCACTGTTGATGTGCTG
GGCGCAGAGAGCTCTATGACAACACTGACAGGGAGTTCCGCAGCTTGGAG
AGGTATGTATGAAGTTGAAAGTTGTAGTTGCTATGTGCTGCAGCTCGTCC
TTTGCGACTCGACAGTTCTAGCGGCTGTTGTTGAAGTTGAAACGCAATTC
AGCGTAATGCGCTGCAATGGTGGGCTCCCGTACCGTTCCATTGCCTTGGG
TTTGTCAAACTGCACTTGAGAATGGTTGACTCGTTGTCATCCAGCAGTAT
TTCCAGTATTTCTCCTGTGCACAAGGTTTTGCCTGGGGCTTCATCAAGTG
TCTTGATATTCTTACAAATTTCACATTTTGCACTACCATGGGTCACAAAG
TATGCTGGCAAGGCTGAAAATGCCAACAGCCACGTCATGTTGCATTTCAT
CACCTGTCCACATCCCACTTCCTGTTTGCGTTGCCACAGTTGCCCGGCGC
TGGTGCTGAATGCGGACTATCAGCCCCTGAGCTACTTGCCGCTGAGCTTG
TGGCCTTGGCAGGAGGCTATCAAGGCGGTGTGGATGGACAGGGTGGTGGT
GCTGGCTACTCATGACAGGTCAGCGGCTGAGTGGTACGCAAAATATGCTT
TGAGTACTTCAATACTGTAACTTCAACAGTTCGATGTGCAGCTGCTCAGC
AGCAGGCATAGTATATTTGAACAAGCTTGCCTAGAATGTTTGTCCAGTTG
CAGCTGCGCTGTGGAATTGGTTCAGTCGCTCTCACCTTTGAACGCCAAAG
TGACCTATGAAGCTTGGCAAAAGTGCATAGCGCGCTGGGAACTACAGGAC
GACAGCTGATGCCCCCCAGCTACAGCTCGTCGCTGATGCACTCATTGCGG
GATAGTTTGATAGCTGAGGACGTCTGACATTTCGCAACACAGCGCTACCA
GTCCAAGATATTTTACGTTGATGTCCACCTAGACTGACACTGGACAGCGC
ACACTTACAGTGCAGTTTACCGCGTTGCGCGTGCGGATACAAAAACTCTG
TGAAGTTAAACCAGGCTGACTGTGGTGCAGCTCAACTCGAACAGCATCAC
ACTGCACCGGCCCTGCTTTACCCTAAGAGTTCTGGTAGCCCGGCACCCAG
CGCAGCGTTGGAGCGGAAAGCCACGTTGCTGCTGCGTTGCTGCTGCTGAG
CAGCGTGCCATGGTAGTGGTCACAGTGCTGCAGCTGAAAAAGCGTCAAGC
AGGCAATTGATAGGGCACAGCCTGGCTGAGTCGCGCAAAATGTTTAGGTA
CACAAGTGGGTTTTCGATTAACACTGGGTTCGACTGGAGGACTGACCAGC
CAAATCACTTCAGGAGCGCTCGTGTCATGATCTAAGTGGCGTCTTTACCA
GCCTGCTGCACTCGAGAGTTCGTCTGAGTAGGCTGAGAGTCGTTTGAATC
TTTGCATGTTCTGTTTGCAGCGGCTGCAAGCCACTGTCACGATGGCAACA
CATTGCGCCAGCTGATGCATTACGTTGACTTTCCTACAGTGCTTCCAGGC
ACTCAATTAATTGCAACTGGATGGCCATTCTCAGTCATGCTCTCTCGAGT
AAACATCTGAGCAGCTAGTACCGTGAAGCATGTGTAAATGATATGGTACA
GTGTACACAGTGATGGCAACGAAACCTGCATGCTCCTGCAATCGAGCATG
TCGCTGTGAGCAGCCTCAGCAGTCTGAGCGGGCTTGCTGCACGGTGCGGC
GGGGGTTTAAATTGCACACCACCAGCTTCAACAACCGCGCCGACAACATT
GGCACTGCAAAGCTCATTTCGTAGCCCATGATGCATAGATCATGTGCAAG
ACAATCAAATTCACCTGGTTTTGCCTTGGGGGGTGTGGGCTGGGCAATGG
CGTATGGTCTGGGCAACGTATGGTCTGCATCAGGCGCAGAGACATGGTTC
TCTTTTCCTCCCTCAGTGCAATATCTGACGCAAGATGCAGTTTGCGCATG
CACATGCTCACGACATTTCAGCTGCTGGCCACACAATTATCTCACTGAAC
AACGGTAGCTACTTTTTCCATCCCACATGTCTAACGTGCACGTGTGGCAA
GTGATAGCCCATCCTTACAATCTTCCCTGGTAGGGCCCAAGCCAGCATGG
CTAATGCTTGATGAGATGCTGCGCTGCACCCCGCAGCTTCAGGCCATCAG
CATCCACGACAGACTTAGAGAAGTGCGTGCATCAGCCATTGCCTTATACT
GTTCGTTGTTTGTCTGAACTGTGCAGGTATGTTAGGAGCGCCAATGTGGA
GCTCAAGCTGCCGAGGTGAGCCTGTATGTAACATGTTCCAGTTTCTACTG
TAGTATCTTACAGTTTCTGCAAGTGCAAGAGGGGGGCACCAACAGTTGTC
ATTGGTGCCAACTGATGTGGAATCACTGTATTGTTGATACTCAGCGGTCA
ACACGCTTCTGGCAACGGAGCTAATGGTTCTGCTCGTCATTGATGCAAGT
GGTGGCGACCCCTGCTCGCCTGATTTTGATTGCATGTCACGTGCATGTGT
TGAAGTTCATGTTGAAGATCGTGACACGACGGCCGTACAAAGCGGCGTCA
TGGCACGCTCAACAGCGCATGCGTGAACCACTTGATCTACATGTACCACA
TGATCTCTGTGTATGAACGTGCTCGTATTATTCCACTCGGTGGCTGACCT
GGCTTGCTTCGGTGTCGCTTATCTGTGCTGTGCTGGTTGTTGCAGCGTCA
TCGCCTTGAAGGGGTACGTCAACCAGCACGCCAAGGTGAGGCCTCCGTCA
CAAATGCATGGATGCATGAGTGAAGTGAACTTGTTATGTCAGCAACTTCA
GCGCCTGCTGCCTGAGTGTTTCTTTTGGACTTCCTTGGGCTAGAGGGCTC
ATCATTTCAGCATGGTCTTTTCATCTGATCTATGGGTCGGCTTCCATCAG
GGCTCCGTGATGTAGTGTTGTAGTTTGAAGAAGTATTTGAAAGTGACGGT
CCGCCGCCACTGTTGCCTGCAAGGAGACATGTCTAACAGCTCTCTGCTGT
GTCTTGCTGCTTCAGGTGCCCAGCTTTACGCGGAGGAATCTTTACCTTCG
TGATGGCTATCAGTGTGCGTACTGCTCGGTAAGCCTTTTTTTCCAATGCA
GCGCTGTTGACCAGAGTATGAGGGTATGGGGGCGGGGGGGGGGGGGGGGA
TGTGAGGCAACTCAAAAAAAGTCTGACCAGATGTAGCGCATAGCTTTTGG
TGCAGTTGGAAGCACAGTCTCGTGTGGCAGATGTTGCATCGGCACTGCAG
CCTTCAAGTCAAGTGCATGGTTTCTGACTGTGAGGCATAGCCTGTGTTCG
AAGAGTGGCAGGAGAGATTGAAGAGGCATTCTGCACCTACTGCAGCGGTT
CCAGCCCATCTTTCTAGCGACAGCGCCTGAAACCGAGCATGTCCTTTCTG
TAATCCCATGCTTTGGATGGCATCTTGAACAGCTGTTTGCTGTCGCCATG
GCATCGTCAGTGGGCATTTATAACAAAGGACCGTGTCATCATTAGCTGTG
TTTCCTCATGCCGCATTCTGGCATGGTTCGGAAGGTGACCACCATGATCG
GTCTGCTCGCTTGATAGTGCCTCGCATAAATGTGCAACTATCATATGTTC
CTCTGCTGCATCCTGCCCTGCATCATGTGTTCATCTGCATCATCGTACCC
TGTGATGATGTGCAGAAGCAGTTCCAAGCTGGGGACTTGAGCTTCGACCA
CGTAACCCCCAGGAAACTGGGCGGACCGACCAGGTCAGTGAAACGTGCTG
CTTCACGCCATGGTTGTTCTGCATCTTTGCAGGTGCAACCGGTTTCAACC
ATACTGCGCTGACACGCAGCGCCACAACTTTTCTGCTGTGTGCGTCAATG
GTCAGACGTAGACCCACCTGAATACGTCCAGGCCCTAACCCTAACTTCAA
GCATGTGCCATGCGGTGGTTTGTATCGAACTGCAATTGCGCCACCATCGC
CCTGCTGCAGTGCTCACCCGCTTCGTGCTACCGCGCTCGTGCCTTGCAGC
TGGACCAATGTCGTGACCAGCTGCCACCGCTGCAATAACGCCAAGGTAAT
GAGGAGCAGACCACTATGACATGGCTTCACAAGCGCTTGGTGATATCAGC
GTGGTCCAGATGCAAGTCGGCGACTGAGGCTTGTTCAGTCAATGCCCTCC
ACTCGCTGCTCTTTACATCTGTAATCGCAGACGATGTTGAAGCACTCTGC
TGCCACGTCCAGCATGTCCACATATTATTTTAATAACTAAAACGCAAACT
CAAAGGTCATGCAACCTGCATCATCTTTATTCCTTTATAATTAGGAAGTG
TAGTATCCACAAGTGCCTTTGAATTATGCTGCTTCAAATTGCAATGGTTA
TTGGGGCCTGTGTCAAGATATCTGAATCTGCAGAGCAGGATGGATCAGCC
TCGACTCTGCTGCTGCTGCACCAGAGCAGCTTTGTCCACAGCAGGCAGTG
CCTTGTGGTTCACTCCTGAAGTGACCTCGTCGATGCTTTGTCTTGCACAA
TGGTTGACGAAGTTGCATGCCCACAAGCGCTCACAGGACAACGCACCTTG
CAAGCAGGCACTCTGTGCCCATGTCTCAGCCACTTTTTGCCTTCGCCATC
GCTAGCCGCTGGCTGAAGCCGCTCGGCATAGCGCATCTGTTTTCTCCATA
CCTGCACGCTGCTGAAGCTTGCTCCCTTTTTTGTGCGCTTACGCTGCAGG
GTGACTGCCACCCTAAGAGCTTGTCAAGAATAGGCATGCGCCTCAACAAG
GCTCCGCACATCCCGACCTTCTATGAGCTGCAAAACCAGGTGCATGACGG
TGACAGCCTCACATGGTGTTGTCATGATTGTGTTTTTACTCCAAATGTAG
TTGACCAACCATTTGTGCATTTGGCAATGATGTCAGAGCCGCGCATTTGT
GTTCCTGCTGCCGGCGCTGCACAATGAACTGGGCAATCAGCTCGGCTTTG
CAGTTACTGCCATTGATTGGCCTCTCTTTTGCTGGGTCAGGAGCGGAGGG
GGTTGAGAGGTCTGGGCCGTCTCAGACCACAGCTGGCGACCTTTTTAAAC
TGTGCCTACTGCCAACGCTTGCACTAATTTGATTACACAAGGTTGTTGTC
CTGGTGCACTGCAGAGTTGAAGTTGATGCTTGCGCTGCAGCCCACCGGGT
CCATGTGACGGTGGCAGTCTGCAAATTGCAGGCCGTCTGTCAGTGAGGCT
TCGCTGTGTTGAACGTCATCAGTGTTGGTCACTCACTGCCTTGCACGTCC
CCCATTTGGCTCGTCTGCAGGCGCGAAGGTACCCCCCAAAACTGATTCAC
AAGACGTGGGCGGAGTACCTGTATTACGACTCTGCAATTGAAGCGCGATT
GCAGGACGAGCAGCTATAGCCATTGCTCCGTTTTTGGGGGAATAAATGTG
AGTATTCCTCTGCTGGTATGAAGCAGCACTCGTTGCCCTCACTGCTGCTG
AGGCGTTGTCTGCTGCGTCGACTGGTGGACTGCGGCAGCGCGCATACTGA
GCGAGCGGCTGCACTGGAAGTTGGTTGAGGCATATTGAAGTGACCTTGCG
TATTTGTGATTATGGCCGCATCAGCCTCTCATACTTGCGCTTGAACTTCA
CCTTGCCGCTGCGCGTAGAGCTGACAACTACTTTTGCGTCTGAAGCATGC
ACGATTGTTGCAGCGCCCCGTGCTTCTGTGAATCATGGTGATGCCAGCAT
GTATCAGCTTTGAAGCAAGCATGTCTGCACCCTCGTGCCTCGACAGCTGC
TGCAAATGCGAGCTACCAACACTCTCATGCACCAGCCGATATATAACTTA
AAGGAGCAGGATGGCGTGCCCATCGCTGATAGACAGCCGACGACAATATG
CAGGTTGCTCGAGCGTGTTTTGCAGGTTGACCATTGCATGGCCATTATAT
CGTGCGCATGCAACACAGCAACAGCACCTTGAATAACGTATGTTACATTC
GATGCCACTGCGGCTGATCCACGTTGGCGTTTTCTGCGCGCAGGTGCAGA
AGGGGCCAATCACCACCAGAGTCAAGTGTACAAAACGCGGAAATCATCTG
CAACAGGTACAAAGAGGGGGCGACTGGACAAACGCACAGTACAAAGGGGG
GGGGATACCGTGAAGGCTGCAAACGATTCTCGACGGCATCACCTTTGCAA
GAACGGAAATTACAGAAGCAGGCGGCGTGTGCGCCTGAATTAACCAGTTG
AGTTTGCTGGCGCGGTTGTCGCGCAAGTGAGCATTGCAGGG
back to top

Coding sequence (CDS) from alignment at Contig_141:237560..245600-

>mRNA_13383 ID=mRNA_13383|Name=jgi.p|Trimin1|353036|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_141:237560..245600- (Tribonema minus UTEX_B_3156 )
ATGAGTGTGCGCCTGCTGGCGCTAGTCACGGTGCTGGCGCTTGTGATGAA
CAGTGAGGCTTTTTCAACCAGGGCCGCCATCACCTATGGCGTCTGGCGTG
CCACCTCCCCGATGACCATGAAGCAACGATCTTCTGGCGACTTCAGGGTC
AAGCAGGAGGAGTGCCCGGGGGTGGCGGAGGGCTCTGCTGAGCTAGAGCT
CTATGACAACACTGACAGGGAGTTCCGCAGCTTGGAGAGTTGCCCGGCGC
TGGTGCTGAATGCGGACTATCAGCCCCTGAGCTACTTGCCGCTGAGCTTG
TGGCCTTGGCAGGAGGCTATCAAGGCGGTGTGGATGGACAGGGTGGTGGT
GCTGGCTACTCATGACAGGTATGTTAGGAGCGCCAATGTGGAGCTCAAGC
TGCCGAGCGTCATCGCCTTGAAGGGGTACGTCAACCAGCACGCCAAGGTG
CCCAGCTTTACGCGGAGGAATCTTTACCTTCGTGATGGCTATCAGTGTGC
GTACTGCTCGAAGCAGTTCCAAGCTGGGGACTTGAGCTTCGACCACGTAA
CCCCCAGGAAACTGGGCGGACCGACCAGCTGGACCAATGTCGTGACCAGC
TGCCACCGCTGCAATAACGCCAAGGGTGACTGCCACCCTAAGAGCTTGTC
AAGAATAGGCATGCGCCTCAACAAGGCTCCGCACATCCCGACCTTCTATG
AGCTGCAAAACCAGGCGCGAAGGTACCCCCCAAAACTGATTCACAAGACG
TGGGCGGAGTACCTGTATTACGACTCTGCAATTGAAGCGCGATTGCAGGA
CGAGCAGCTATAG
back to top