mRNA_15635 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176693
Unique NamemRNA_15635
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176693 vs. uniprot
Match: A0A835ZDX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX3_9STRA)

HSP 1 Score: 213 bits (541), Expect = 6.520e-65
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1 
Query:    1 MQQQQQQQPPWAVKLGFSHVLLNHEGCNFDLQSTAQEPLALDEHDTPILERTEGEGVPEQQRRRRIQKPKPQCEHGKRRSQCCACSPXXXXXXXXXXRDCGGSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRLRCKHCGGAAQVEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSAAVAVVPSDRVVAEV 807
            MQQQQQQQPPWAVKLGFSHVLLNHEGCNFDLQSTAQEPLALDEHDTPILERTEGEGVPEQQRRRRIQKPKPQCEHGKRRSQCCACSPXXXXXXXXXXRDCGGSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRLRCKHCGGAAQVEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSAAVAVVPSDRVVAEV
Sbjct:    1 MQQQQQQQPPWAVKLGFSHVLLNHEGCNFDLQSTAQEPLALDEHDTPILERTEGEGVPEQQRRRRIQKPKPQCEHGKRRSQCCACSPXXXXXXXXXXRDCGGSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRLRCKHCGGAAQVEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSAAVAVVPSDRVVAEV 269
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176693 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDX3_9STRA6.520e-65100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_140contigContig_140:155456..156512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176693|e_gw1.140.8.1
Hectar predicted targeting categoryother localisation
TranscriptId177015
TrackFilteredModels1
ProteinId176693
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176693gene_15635Tribonema minus UTEX_B_3156 geneContig_140 155456..156512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176693Trimin1|176693|e_gw1.140.8.1Tribonema minus UTEX_B_3156 polypeptideContig_140 155456..156512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15635_2exon_15635_2Tribonema minus UTEX_B_3156 exonContig_140 155456..155945 -
exon_15635_1exon_15635_1Tribonema minus UTEX_B_3156 exonContig_140 156193..156512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15635CDS_15635Tribonema minus UTEX_B_3156 CDSContig_140 156193..156512 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15635 ID=mRNA_15635|Name=jgi.p|Trimin1|176693|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_140:155456..156512- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCAGCAGCAGCAACAGCCGCCGTGGGCTGTGAAACTGGGATT
CTCCCATGTTCTGCTGAATCATGAGGGCTGCAATTTTGACTTGCAAAGTA
CGGCACAAGAGCCACTCGCGCTCGATGAGCATGACACACCTATCCTGGAG
CGCACTGAGGGTGAAGGTGTACCGGAACAGCAGCGGCGGCGGCGCATTCA
GAAGCCCAAGCCGCAGTGCGAGCATGGCAAGCGCCGGTCTCAGTGCTGCG
CGTGCTCGCCTTGTGCGCATGGCAAGCGAAAGAGCGCCTGCAGGGACTGC
GGAGGCAGCGCCTTTTGCAGGCACGGCAGGCAGAAGGTCTCGTGCCGCGA
GTGCGGCAGCGGCAGCTACTGCGCGCACGGTAAGCAGAAGCACCGCTGCA
CGGCGTGCAAGGGTGGCAGCATGTGCATGCACGCGCGCCAGCGCATGCAG
TGCAGGGACTGCCGCGGCGGCAACATCTGCGAGCACGCGCGCGCACGCAG
CCACTGCAAGGCGTGCTCTCCGGGCCGATACTGCGCGCACCAAGTGCTGC
GCCGAACCTGTAGGTGTTGCAGCGGCGGCGCGTTGTGCAGGCACGGGCGG
CGGCTGCGCTGCAAGCACTGCGGCGGCGCGGCGCAGGTAGAGGGGGCGGC
AGCAGCGGCAGCAGCAGCGGCAGCGGCAGCAGAGGCGCAGCACCAGCAGC
AGCAGGCGGGGGTGCGGGGCACGGGCGGCAGCGCTGCCATTGCGGAGCAG
GAGTCCACAAGCGCGGCTGTTGCTGTGGTGCCTTCGGATCGTGTCGTCGC
AGAGGTCTGA
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protein sequence of jgi.p|Trimin1|176693

>Trimin1|176693|e_gw1.140.8.1 ID=Trimin1|176693|e_gw1.140.8.1|Name=jgi.p|Trimin1|176693|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MQQQQQQQPPWAVKLGFSHVLLNHEGCNFDLQSTAQEPLALDEHDTPILE
RTEGEGVPEQQRRRRIQKPKPQCEHGKRRSQCCACSPCAHGKRKSACRDC
GGSAFCRHGRQKVSCRECGSGSYCAHGKQKHRCTACKGGSMCMHARQRMQ
CRDCRGGNICEHARARSHCKACSPGRYCAHQVLRRTCRCCSGGALCRHGR
RLRCKHCGGAAQVEGAAAAAAAAAAAAEAQHQQQQAGVRGTGGSAAIAEQ
ESTSAAVAVVPSDRVVAEV*
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mRNA from alignment at Contig_140:155456..156512-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15635 ID=mRNA_15635|Name=jgi.p|Trimin1|176693|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1057bp|location=Sequence derived from alignment at Contig_140:155456..156512- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCAGCAGCAACAGCCGCCGTGGGCTGTGAAACTGGGATT
CTCCCATGTTCTGCTGAATCATGAGGGCTGCAATTTTGACTTGCAAAGTA
CGGCACAAGAGCCACTCGCGCTCGATGAGCATGACACACCTATCCTGGAG
CGCACTGAGGGTGAAGGTGTACCGGAACAGCAGCGGCGGCGGCGCATTCA
GAAGCCCAAGCCGCAGTGCGAGCATGGCAAGCGCCGGTCTCAGTGCTGCG
CGTGCTCGCCTTGTGCGCATGGCAAGCGAAAGAGCGCCTGCAGGGACTGC
GGAGGCAGCGCCTTTTGCAGGTACAAGCGAGCCTGTGCGAAAGAAAGTGC
TAATTAAAATCATGTTCATGAAAAAAATACTGCCATGACCACCCTGTTCA
ACACGCGTTCGCAAACAACGGCAAACATAATGATGTACTTGGTGCTCGCT
TCATGCGCTGACTTCGAGTGGTGGCAGCAATAGGAGGTGACGCCACTGCC
GTTAATCTGCTCAGGGTTCTTTCCAATCATGCTCTCAGCGCGCAACCGAC
TCTCTCTGTGCGCGCAGGCACGGCAGGCAGAAGGTCTCGTGCCGCGAGTG
CGGCAGCGGCAGCTACTGCGCGCACGGTAAGCAGAAGCACCGCTGCACGG
CGTGCAAGGGTGGCAGCATGTGCATGCACGCGCGCCAGCGCATGCAGTGC
AGGGACTGCCGCGGCGGCAACATCTGCGAGCACGCGCGCGCACGCAGCCA
CTGCAAGGCGTGCTCTCCGGGCCGATACTGCGCGCACCAAGTGCTGCGCC
GAACCTGTAGGTGTTGCAGCGGCGGCGCGTTGTGCAGGCACGGGCGGCGG
CTGCGCTGCAAGCACTGCGGCGGCGCGGCGCAGGTAGAGGGGGCGGCAGC
AGCGGCAGCAGCAGCGGCAGCGGCAGCAGAGGCGCAGCACCAGCAGCAGC
AGGCGGGGGTGCGGGGCACGGGCGGCAGCGCTGCCATTGCGGAGCAGGAG
TCCACAAGCGCGGCTGTTGCTGTGGTGCCTTCGGATCGTGTCGTCGCAGA
GGTCTGA
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Coding sequence (CDS) from alignment at Contig_140:155456..156512-

>mRNA_15635 ID=mRNA_15635|Name=jgi.p|Trimin1|176693|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_140:155456..156512- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCAGCAGCAACAGCCGCCGTGGGCTGTGAAACTGGGATT
CTCCCATGTTCTGCTGAATCATGAGGGCTGCAATTTTGACTTGCAAAGTA
CGGCACAAGAGCCACTCGCGCTCGATGAGCATGACACACCTATCCTGGAG
CGCACTGAGGGTGAAGGTGTACCGGAACAGCAGCGGCGGCGGCGCATTCA
GAAGCCCAAGCCGCAGTGCGAGCATGGCAAGCGCCGGTCTCAGTGCTGCG
CGTGCTCGCCTTGTGCGCATGGCAAGCGAAAGAGCGCCTGCAGGGACTGC
GGAGGCAGCGCCTTTTGCAGGCACGGCAGGCAGAAGGTCTCGTGCCGCGA
GTGCGGCAGCGGCAGCTACTGCGCGCACGGTAAGCAGAAGCACCGCTGCA
CGGCGTGCAAGGGTGGCAGCATGTGCATGCACGCGCGCCAGCGCATGCAG
TGCAGGGACTGCCGCGGCGGCAACATCTGCGAGCACGCGCGCGCACGCAG
CCACTGCAAGGCGTGCTCTCCGGGCCGATACTGCGCGCACCAAGTGCTGC
GCCGAACCTGTAGGTGTTGCAGCGGCGGCGCGTTGTGCAGGCACGGGCGG
CGGCTGCGCTGCAAGCACTGCGGCGGCGCGGCGCAGGTAGAGGGGGCGGC
AGCAGCGGCAGCAGCAGCGGCAGCGGCAGCAGAGGCGCAGCACCAGCAGC
AGCAGGCGGGGGTGCGGGGCACGGGCGGCAGCGCTGCCATTGCGGAGCAG
GAGTCCACAAGCGCGGCTGTTGCTGTGGTGCCTTCGGATCGTGTCGTCGC
AGAGGTCTGA
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