mRNA_15660 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153699
Unique NamemRNA_15660
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA)

HSP 1 Score: 277 bits (708), Expect = 1.850e-93
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
            MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG
Sbjct:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 165          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA)

HSP 1 Score: 206 bits (524), Expect = 9.430e-66
Identity = 111/143 (77.62%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMH 429
            MSQ GVP NLTTYNLA  ACRNSEAVQQADRILAS+AAAG                  RDWRRAIDVFRDMEANH  FVDAGMWNCLLEVLSA  A +STLDAAAQMAE GFAPTTTTYM L QAHATLGDGAAIESVLSSMH
Sbjct:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH 143          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z7V6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V6_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.090e-51
Identity = 97/164 (59.15%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
            MSQ G+P NL  YN+AL ACR+SEAVQQADRILASMAAA                   +DWRRA++VF DMEA H  F +  MW+ L++VL AC AP+STLDAAA MAE G  PTT TY  +  AHA LGDG AIESVLSSM AAG+EV   +L  L  GYAHG
Sbjct:    1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHG 164          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.560e-47
Identity = 115/165 (69.70%), Postives = 124/165 (75.15%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
            MSQ GVP   TTYNLAL+ACR+S AV QADRIL       XXXXXXXXXXXXXXX   +DWRRAIDVF  MEAN  AF D   WN LL VLSAC+AP+STL AAA MAERG AP   TYM + QA+A LGDGAAIESVLS M AAG+EV PKTL VLA GYA+ G
Sbjct:  211 MSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSG 375          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.830e-46
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1
Query:   13 GVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
            G+P ++ ++NLAL A  +  A+Q ADRILASMAAAG                  RDW RAIDVF DMEANH  F DA MWN LL+V+ AC AP+STL+ AA MAE G  P T TY  + QA+A LGDG AIESVL SM AAG++V PKT+ VLA GYA+G
Sbjct:    1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANG 160          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.010e-46
Identity = 98/165 (59.39%), Postives = 115/165 (69.70%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
            MS+  +P ++TTY+LAL+ CR+S+AVQQADRILASMAAA                   +DWRRAI+VFRD+EANH AFVD  MWN LL+ L A   PQS L AAAQMAERG APT  T + L +AHATLGD AA+E VLSSM  AG+EV   +L VLA GYA GG
Sbjct:   36 MSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGG 200          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZHN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.350e-36
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  175 RDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
            RDWRRA++VFRDMEANH  F D  MWN LL+VL  CT P++TL  AA MAERGFAPTT TYM L QAHA LGDGAA+ESVLSSMHAAG++V       LA GY +GG
Sbjct:  143 RDWRRALEVFRDMEANHPEFADVHMWNRLLQVLVVCTVPRTTLKVAADMAERGFAPTTATYMILLQAHAALGDGAAVESVLSSMHAAGEDVTFAARAALAKGYVYGG 249          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.070e-35
Identity = 77/164 (46.95%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
            M+Q G P +LT YNLAL  C    AV  AD+ILA MAA G                  +DW RA+ VF  +EA++ A++D  +W CLL+ LS C  PQ+ L+AAA+MAERG   T   ++ + +AHA LGDGAA E+ LSSM AAG +V    L  +A GYAHG
Sbjct:  442 MAQSGTPPDLTAYNLALHTCSGGSAVLHADKILADMAAMGLAPNRHTFRGMLRACRMAQDWERALAVFGSVEAHYPAYMDTDLWICLLDALSVCRQPQAVLEAAARMAERGLPTTAAVHVVIAKAHAELGDGAAAETALSSMRAAGLKVTEVALFKVAEGYAHG 605          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z021_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z021_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.300e-27
Identity = 67/129 (51.94%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  106 MAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
            MAAAG                  RDWRRAI VF DMEA H  F DA  WN LL+VL    AP STL AAA MA+RG  P T TY  +  AHA  GD AAI+ VL+SM AAG+EV   TL + A GY +G
Sbjct:    1 MAAAGIAPDGRTFAGVLQTCRHARDWRRAIYVFFDMEAKHPEFADAHTWNRLLQVLYVHPAPDSTLAAAALMAQRGVVPITATYNTVLWAHAMRGDSAAIKKVLTSMRAAGEEVTLTTLAMCAKGYGYG 129          
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.370e-24
Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
            M Q G   ++T YNLAL+A      +Q AD +L  M  AG                  RD  RA+++F  MEA +L+FV+  MWN LL  + A   PQS L  A +M +RG AP + TY  L  AHA LGD A ++S++S M A+G E+ P     +  GYA GG
Sbjct:  136 MRQSGTKPDVTAYNLALRA---QTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQRGVAPDSITYSLLLAAHAALGDEAKVDSLVSQMSASGVEIPPAYYRWVIEGYAQGG 297          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZBY4_9STRA1.850e-93100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZAQ1_9STRA9.430e-6677.62PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z7V6_9STRA2.090e-5159.15Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z2Y9_9STRA3.560e-4769.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0W7_9STRA1.830e-4656.88Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z7U6_9STRA3.010e-4659.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHN3_9STRA1.350e-3668.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0G4_9STRA2.070e-3546.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z021_9STRA8.300e-2751.94Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C9W1_9STRA4.370e-2440.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_140contigContig_140:394304..394798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153699|gw1.140.73.1
Hectar predicted targeting categoryother localisation
TranscriptId154021
TrackFilteredModels1
ProteinId153699
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153699gene_15660Tribonema minus UTEX_B_3156 geneContig_140 394304..394798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15660_1exon_15660_1Tribonema minus UTEX_B_3156 exonContig_140 394304..394798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15660CDS_15660Tribonema minus UTEX_B_3156 CDSContig_140 394304..394798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153699Trimin1|153699|gw1.140.73.1Tribonema minus UTEX_B_3156 polypeptideContig_140 394304..394798 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAGGTAGGGGTGCCGACGAATCTAACGACGTACAACCTGGCACT
TAAAGCATGCCGCAACAGCGAAGCCGTGCAGCAGGCCGACAGGATTCTGG
CGAGCATGGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGGGC
GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATTGACGT
CTTCCGCGACATGGAGGCGAATCACCTCGCCTTTGTCGACGCGGGCATGT
GGAACTGCCTCCTAGAGGTGCTCTCTGCATGCACGGCGCCACAAAGCACG
CTTGATGCAGCGGCTCAAATGGCGGAGAGAGGGTTTGCGCCCACCACTAC
CACGTACATGGCCCTCTTTCAGGCGCATGCCACGCTCGGCGATGGCGCCG
CGATTGAGAGCGTGCTGTCGAGCATGCACGCGGCGGGCAAGGAGGTGATG
CCCAAGACGCTGGTCGTGCTTGCCATCGGCTACGCGCACGGCGGG
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protein sequence of jgi.p|Trimin1|153699

>Trimin1|153699|gw1.140.73.1 ID=Trimin1|153699|gw1.140.73.1|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGVAPNRRTFAG
VLRACRYSRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQST
LDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVM
PKTLVVLAIGYAHGG
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mRNA from alignment at Contig_140:394304..394798+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGTAGGGGTGCCGACGAATCTAACGACGTACAACCTGGCACT TAAAGCATGCCGCAACAGCGAAGCCGTGCAGCAGGCCGACAGGATTCTGG CGAGCATGGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGGGC GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATTGACGT CTTCCGCGACATGGAGGCGAATCACCTCGCCTTTGTCGACGCGGGCATGT GGAACTGCCTCCTAGAGGTGCTCTCTGCATGCACGGCGCCACAAAGCACG CTTGATGCAGCGGCTCAAATGGCGGAGAGAGGGTTTGCGCCCACCACTAC CACGTACATGGCCCTCTTTCAGGCGCATGCCACGCTCGGCGATGGCGCCG CGATTGAGAGCGTGCTGTCGAGCATGCACGCGGCGGGCAAGGAGGTGATG CCCAAGACGCTGGTCGTGCTTGCCATCGGCTACGCGCACGGCGGG
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Coding sequence (CDS) from alignment at Contig_140:394304..394798+

>mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGTAGGGGTGCCGACGAATCTAACGACGTACAACCTGGCACT
TAAAGCATGCCGCAACAGCGAAGCCGTGCAGCAGGCCGACAGGATTCTGG
CGAGCATGGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGGGC
GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATTGACGT
CTTCCGCGACATGGAGGCGAATCACCTCGCCTTTGTCGACGCGGGCATGT
GGAACTGCCTCCTAGAGGTGCTCTCTGCATGCACGGCGCCACAAAGCACG
CTTGATGCAGCGGCTCAAATGGCGGAGAGAGGGTTTGCGCCCACCACTAC
CACGTACATGGCCCTCTTTCAGGCGCATGCCACGCTCGGCGATGGCGCCG
CGATTGAGAGCGTGCTGTCGAGCATGCACGCGGCGGGCAAGGAGGTGATG
CCCAAGACGCTGGTCGTGCTTGCCATCGGCTACGCGCACGGCGGG
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