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Homology
BLAST of jgi.p|Trimin1|347668 vs. uniprot
Match: A0A836CK99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK99_9STRA) HSP 1 Score: 568 bits (1464), Expect = 5.820e-199 Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 1
Query: 1 MVDVVHKTCEAPGCRLLANYGTRGVGNKGRQFCAAHKLPDMCHVAXXXXXXXXXXXXXXXXFAGAPKTHCCRHRLEGMECSTSSRERCRAXXXXXXXXXXXXXXXXXXXXXXRPQGTVTKEQCRWPGCSTRAGFKKGASGGVSGYCALHVEQAGIEGGASPAAVAASRGKARRRLSSDSTHATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLRRSQRKRSAHVLSDFEFEYYGDDCAHGAADXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQFRQLGDDRVRMRCGSGXXXXXXXXXXXXXXXXXXXXXSEALLPDTLALSLLLGLKSECLASAATXXXXXXXXXXXXXRVSAAHHLPKRVRRDWCKRERSAGAAXXXXXXXXXXXXXXXXXAAQRPWPAPLFRSEALAAAAPAQGGWGMESAACGALRGLSCTQEEGAAAAVLLMGWRMGRA 1380
MVDVVHKTCEAPGCRLLANYGTRGVGNKGRQFCAAHKLPDMCHVAXXXXXXXXXXXXXXXXFAGAPKTHCCRHRLEGMECSTSSRERCRAXXXXXXXXXXXXXXXXXXXXXXRPQGTVTKEQCRWPGCSTRAGFKKGASGGVSGYCALHVEQAGIEGGASPAAVAASRGKARRRLSSDSTHATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLRRSQRKRSAHVLSDFEFEYYGDDCAHGAADXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQFRQLGDDRVRMRCGSGXXXXXXXXXXXXXXXXXXXXXSEALLPDTLALSLLLGLKSECLASAATXXXXXXXXXXXXXRVSAAHHLPKRVRRDWCKRERSAGAAXXXXXXXXXXXXXXXXXAAQRPWPAPLFRSEALAAAAPAQGGWGMESAACGALRGLSCTQEEGAAAAVLLMGWRMGRA
Sbjct: 1 MVDVVHKTCEAPGCRLLANYGTRGVGNKGRQFCAAHKLPDMCHVAXXXXXXXXXXXXXXXXFAGAPKTHCCRHRLEGMECSTSSRERCRAXXXXXXXXXXXXXXXXXXXXXXRPQGTVTKEQCRWPGCSTRAGFKKGASGGVSGYCALHVEQAGIEGGASPAAVAASRGKARRRLSSDSTHATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLRRSQRKRSAHVLSDFEFEYYGDDCAHGAADXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQFRQLGDDRVRMRCGSGXXXXXXXXXXXXXXXXXXXXXSEALLPDTLALSLLLGLKSECLASAATXXXXXXXXXXXXXRVSAAHHLPKRVRRDWCKRERSAGAAXXXXXXXXXXXXXXXXXAAQRPWPAPLFRSEALAAAAPAQGGWGMESAACGALRGLSCTQEEGAAAAVLLMGWRMGRA 460
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|347668|estExt_Genemark1.C_Ctg_140116 |
Hectar predicted targeting category | other localisation |
TranscriptId | 347990 |
Track | FilteredModels1 |
ProteinId | 347668 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Trimin1|347668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1383bp|location=Sequence derived from alignment at Contig_14:1075298..1080104+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGACGTGGTGCACAAGACGTGCGAGGCGCCAGGCTGCCGGCTGCT GGCCAACTACGGCACGCGCGGCGTGGGCAACAAGGGGCGCCAGTTCTGCG CGGCGCACAAGCTGCCGGACATGTGCCACGTGGCGCACCGCGCGTGCGCG CGCAAGGGCTGCGAGGGCAACGCCAAGTACGGGTTCGCCGGCGCGCCCAA GACGCACTGCTGCCGCCACAGGCTGGAGGGCATGGAGTGCTCTACGTCAT CGCGTGAGCGCTGCCGCGCGTCCGGCTGCACCAGCAAGGCGCACTGGGGC GAGCCCGGGCGCGCTTCGCAGTGGTGCGAGCACCACCGGCCGCAGGGCAC CGTGACCAAGGAGCAATGCCGCTGGCCGGGATGCAGCACAAGGGCGGGGT TCAAGAAGGGGGCTTCGGGGGGTGTCAGCGGGTACTGTGCGCTTCATGTC GAGCAGGCTGGCATTGAGGGGGGTGCGTCGCCCGCTGCAGTTGCGGCCTC CAGGGGCAAGGCGCGACGCCGCCTCTCCAGCGACAGCACACACGCAACCG CTACCGGCAGCGAAGACGAGCACCACGCAGCAGCGGAGGCGACGGTGGCG CCGCCGCACGCAGCGGTGGCGGCAGCGGCGGCGGCGGCAGCGGAGGCGGT GACGCTGCGCCGCAGCCAGCGCAAGCGCTCCGCGCACGTGCTCTCGGACT TTGAGTTTGAGTACTACGGCGACGACTGCGCGCACGGCGCCGCCGACGAC AACAGCAGCTCCGGCGGCATGGAGGACGACAACACCGACGGCGCGGAGGA CAGCGACGGCAGCGGCGGCAGCGGCGGCGGCGCTCAATTTCGGCAACTGG GTGATGACCGCGTGCGCATGCGCTGCGGCAGCGGTGGCGGCAGCAGCTGC GCGGCAGCGCAGGAGGGCAGCAGCAGCGGCAGCGGCGACGGCGGCGGTAG CGAGGCGCTGCTGCCGGACACGCTGGCGCTGTCGCTGCTGCTGGGGCTCA AGTCGGAGTGCCTGGCGAGCGCGGCCACAAGCACTGCCGCGGCGGCGGAT GCGGCGGCAGCTGCGGCGCGTGTGAGCGCGGCGCACCACCTGCCGAAGCG CGTGCGGCGCGACTGGTGCAAGCGCGAGCGCAGCGCAGGCGCAGCAGCTG CGCAGTCGGCAGCAGCAGCAGCAGCGGGAGCTCAGGCGCCATCTGCGGCG GCGCAGCGGCCATGGCCAGCGCCGCTGTTCCGCTCCGAAGCTCTGGCGGC AGCGGCGCCTGCGCAGGGGGGGTGGGGCATGGAGAGCGCTGCGTGCGGTG CGCTGCGCGGGCTGTCGTGCACGCAGGAGGAGGGCGCCGCTGCGGCAGTG CTCCTCATGGGGTGGCGCATGGGGCGCGCGTAG back to topprotein sequence of jgi.p|Trimin1|347668 >Trimin1|347668|estExt_Genemark1.C_Ctg_140116 ID=Trimin1|347668|estExt_Genemark1.C_Ctg_140116|Name=jgi.p|Trimin1|347668|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=461bp
MVDVVHKTCEAPGCRLLANYGTRGVGNKGRQFCAAHKLPDMCHVAHRACA RKGCEGNAKYGFAGAPKTHCCRHRLEGMECSTSSRERCRASGCTSKAHWG EPGRASQWCEHHRPQGTVTKEQCRWPGCSTRAGFKKGASGGVSGYCALHV EQAGIEGGASPAAVAASRGKARRRLSSDSTHATATGSEDEHHAAAEATVA PPHAAVAAAAAAAAEAVTLRRSQRKRSAHVLSDFEFEYYGDDCAHGAADD NSSSGGMEDDNTDGAEDSDGSGGSGGGAQFRQLGDDRVRMRCGSGGGSSC AAAQEGSSSGSGDGGGSEALLPDTLALSLLLGLKSECLASAATSTAAAAD AAAAAARVSAAHHLPKRVRRDWCKRERSAGAAAAQSAAAAAAGAQAPSAA AQRPWPAPLFRSEALAAAAPAQGGWGMESAACGALRGLSCTQEEGAAAAV LLMGWRMGRA* back to topmRNA from alignment at Contig_14:1075298..1080104+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Trimin1|347668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4807bp|location=Sequence derived from alignment at Contig_14:1075298..1080104+ (Tribonema minus UTEX_B_3156 ) ATGGTCGACGTGGTGCACAAGGTGAGCCGGGTCACTTGCGTCACCTCATG
TCCCTTGTTGGCAACACTTTTCAGCAGCCCTTGTATTCAAGCGACATGAA
TCTCTCAGCGTATTGTTGTGCGTTCATGCGGTGACGCTCTCGTGCTTGAC
ACCGCTGCTGCAGCCTTGCACGTAGCAGATACGCTAGGCAATTATTGTGC
CGGCTTGCGCAACATACACCTCGCGCTACCTGCAACGTTTAGCGCCGTAT
ATGCCTTGTTTGACCGGAGCCCACAGCCCACTCAAGAAGCCCCGACTCTC
CATCACTGCCTACTCACACCAGCACAGCATAAGCACTACTGCCTTCCCTG
CGGGCACCGCAACTGACCGTCACATGACGCTCCGCGCGCCGCCGCTGCAC
AAATTGCAGACGTGCGAGGCGCCAGGCTGCCGGCTGCTGGCCAACTACGG
CACGCGCGGCGTGGGCAACAAGGGGCGCCAGTTCTGCGCGGCGCACAAGC
TGCCGGACATGTGCCACGTGGCGCACCGCGCGTGCGCGCGCAAGGGCTGC
GAGGGCAACGCCAAGTACGGGTTCGCCGGCGCGCCCAAGACGCACTGCTG
CCGCCACAGGTGCGTTGTTATTTACACACACACTCTGAAGTACTTCAGAG
TGCATGCATACAGACATACGTCCATACAAATACACACACATGCATGCATG
CATGCACACATACATACATACATACTCCAAGTGCGGGTTCGCCGGCGCGC
CCAAGACACACTGCTGCCGACACAGGTGCGTTGTTGTTTACATACATACA
TATATACAAACATACGCAGAAGTACATGCATACATACATACATACGTACA
CACATACATACATGCATACATACATACATGCACACATGCAGCATGCATAC
ATACATGCATGTTTGCATACAGACATACATACACACACACATACACACAT
ACACACAAACGTGCACACATGCAAACACGTCGTGCAGGTCTCGTGAGTTG
CGTGCTGCAACGCCGGTGGGCTTCTTGTTGTGCTGAGTTGTGCGGATGGT
GTGTACCACACCACACGCCCTGTATCGCTACATAGTTCGAAAACAGTCGC
TTTTGAGAGATGCGAAGGTTATATGTAAGTGCAGCAATGCGGTTGGTCCG
CCTGCAGGAGAGTTTGCGGGAGGCATGCACTGGTATGGTTCCCATGGCAA
GTCGATGCGCTTCCCGCACGTGCTTGATGATCGATTGCCAGGCATGATGC
CGATTTCACAACGGCGCGTGACTCACCTCTCGCATCACCTCACCTCGCGC
GGTGTGCCACAAGCTTGAGGGCATGAAACGTTGCATGACATCGTGCGAGC
GCCGCCGCGCCTCCGTCCAATCCAGACCAACATCGCTCACATTCAAGTGC
GACTCACCTCCTGCTCTGCACCGCTGAGCGCAAGTGTGACTTAAAGGCTG
GAGGCCATGGAGTGCTCTACGTTGTCGTGCGAGCGCTACCGCGCCTCCAT
CTACTCTATACTTCCATCTTTAAGTTCACATTCAAGTGTGACTCACCTCT
TGCTCCGCAGTGTTGCTTGCCAATGTGAATTATAGGCTGGAGGGCATGGA
GTGCTCCATGTCCAACAGTGACTCACCTTTCAACAGTGACTCACCTCTCG
CTCCACACTGTTGCACGCCAATGTGATACATATTTAGGCTGGAGGGCATG
GAGTGCTCTACATCTTCGCGCGAGCGCTGCTGCGCCTCCATCTTCTCTAT
ACTAACTTCAAGTGTGACTCTCCTCGCTTCACACTGTTGCTTGTCAATGT
AACAGGCTGGAGGGCATGGAGTGCTCTACGTCATCGCGTGAGCGCTGCCG
CGCGTCCGGCTGCACCAGCAAGGCGCACTGGGGCGAGCCCGGGCGCGCTT
CGCAGTGGTGCGAGCACCACCGGCCGCAGGGCACCGTGACCAAGGTATGT
ATGTATTGGTATGCATTTTGTTTACAGCATACCTACCCTCAGGGTGTTGC
AGTAGTGCAAGCACTACAGACCACAAGGGCACCGTAACCAAGGTATGTAT
GTGTTGGTATGTACGCATTTCGCTAACCGCATACCGCACATATCTACAGT
GGTGCGAGCACCACCGACCGCAGGGGGCAGCGTGACCAGAGTATGTATTG
ATACGCATTTCGTGCACCGCATACCAACCTACCCACCGGGACCTGCTGAA
CGAGGAGCCGTTTGCATCGATCAAGTACGCCTGCGGTCGGTGGTGCGGCC
ACCACCGACCGATCTGCCAAACGAGGTGCCGTTTACGTCGAATCAAGTGT
GCCTGTGGAACGGCGGACTGGACCGATGATCACCGACTGCAAGCGTACTT
AATGCAAGCACTCCCTGACCGCAGGCATACTTGATAGACTTGAAGGGCTC
GTCGTTTAGCAGGTCGCTATGATTATCAACAGCGGCGTGAAGTGGCTGTG
GTTTCTTGTAGTGCAGGGCCTGAGTGGCAGTGGTGTTCAAATTAGCACCA
TCATTTTTTAAATGGCCATGCGTGCGTGCGCGGACCAATGTGGCATTGCT
CAACTGCACTGAGGCTAGGGTGAGGGCTGGGACTGGCGCGAAGATACGTA
ATCAGCGCCTGTGCATCATTATGTGTAAGGTTATGTCAGCACTCACTGTA
CTTCAACATTGCACCTCAACACTGCGCTATTCTGACATTTTGAGCAGCAA
GTACCCGCCGCCAAAACTTTGCTTGAACAGGTGCTGAACACTGCCCCGTC
CCCCTGCGCTGCCTGGCAGCACGCGCGCTTATATGCTTGTTTCTGGCAGC
AGAACATCCAGTAGCGAAGTGCAGGAATGTAATGTAAGCGGGGATTGGGG
CTAGCCATATGGGAGCGCCATGGTGTGTATAGGGTCAAAGTACATTGGTA
TAGACCTCAAAGGCACAGGATACGCAGTGTGCATGCCTTGCACAGCTCCA
CGATGCGTATGACACCAGTCGCATATACATGAGCACGCGTACCCGTGAGT
GTATGCGTACGCGTATGCATTTGTCACAATGGCATGCACCATAGGGACAG
CTCTTTGCTCATCAAGACACGAATGAGAGCTTGCAAGTTCCGCAGCAACT
CCCATCGCGCGTCACTGTGCAAGCATTTTCTGCCAATTCTCATCAGCGCG
CCCTTGCATTTCACAGGAGCAATGCCGCTGGCCGGGATGCAGCACAAGGG
CGGGGTTCAAGAAGGGGGCTTCGGGGGGTGTCAGCGGGTACTGTGCGCTT
CATGTCGAGCAGGCTGGCATTGAGGTGAGAAAACCTTATCAAGGACCTTG
TTGAAGGACTGCAAAAGTTGACATGTGGTTCATTGCAGGTGTTGAAGACT
TGAAACTAGACTTTGCTGCAGAGTATGCACATTGTTGACATGATGATGAG
TTGATTACAGTGTGAAGGCTACCATATAGACCAGCAGGACCCCAGCAGCA
CGGGGGTGTGAGTTGCACATTCATGCCCTACAAGAAGCTTGTCGTGGTGT
CCACTCTAGGCAAGGAACTTCTTTCAATGCTGTGCTGACTGTACGAGGCT
GTCACTCTGGTCAGAGTCCCCTGACCGGTTCCTGGACACCTGCACGCTAC
GTCGTGCACCGCGCTGCCTCACAATGCAACAATGGCAGTGCAGCAGCAGT
GCAGCACCACTGTACCATCCCAGCATGCGCGTATCATGCGCCACAGCAAC
GTCTTCCCTGCACTACTACGCACCTCACCGCTGCCTCCTTCTGAGCTTGC
TGCAATACCCGCAGCCACCGCAGCCCCCCCCCCCCCCCCCCCCCTTCTGC
TAACATTGCCCAGTGCTCAGCAGCGCCATGATTCTCGGAACGCCGCCATT
CACTGCTTTTTTGTCGCACATTGCAACTGATCGCTGCTGCAGGGGGGTGC
GTCGCCCGCTGCAGTTGCGGCCTCCAGGGGCAAGGCGCGACGCCGCCTCT
CCAGCGACAGCACACACGCAACCGCTACCGGCAGCGAAGACGAGCACCAC
GCAGCAGCGGAGGCGACGGTGGCGCCGCCGCACGCAGCGGTGGCGGCAGC
GGCGGCGGCGGCAGCGGAGGCGGTGACGCTGCGCCGCAGCCAGCGCAAGC
GCTCCGCGCACGTGCTCTCGGACTTTGAGTTTGAGTACTACGGCGACGAC
TGCGCGCACGGCGCCGCCGACGACAACAGCAGCTCCGGCGGCATGGAGGA
CGACAACACCGACGGCGCGGAGGACAGCGACGGCAGCGGCGGCAGCGGCG
GCGGCGCTCAATTTCGGCAACTGGGTGATGACCGCGTGCGCATGCGCTGC
GGCAGCGGTGGCGGCAGCAGCTGCGCGGCAGCGCAGGAGGGCAGCAGCAG
CGGCAGCGGCGACGGCGGCGGTAGCGAGGCGCTGCTGCCGGACACGCTGG
CGCTGTCGCTGCTGCTGGGGCTCAAGTCGGAGTGCCTGGCGAGCGCGGCC
ACAAGCACTGCCGCGGCGGCGGATGCGGCGGCAGCTGCGGCGCGTGTGAG
CGCGGCGCACCACCTGCCGAAGCGCGTGCGGCGCGACTGGTGCAAGCGCG
AGCGCAGCGCAGGCGCAGCAGCTGCGCAGTCGGCAGCAGCAGCAGCAGCG
GGAGCTCAGGCGCCATCTGCGGCGGCGCAGCGGCCATGGCCAGCGCCGCT
GTTCCGCTCCGAAGCTCTGGCGGCAGCGGCGCCTGCGCAGGGGGGGTGGG
GCATGGAGAGCGCTGCGTGCGGTGCGCTGCGCGGGCTGTCGTGCACGCAG
GAGGAGGGCGCCGCTGCGGCAGTGCTCCTCATGGGGTGGCGCATGGGGCG
CGCGTAG back to topCoding sequence (CDS) from alignment at Contig_14:1075298..1080104+ >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Trimin1|347668|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1383bp|location=Sequence derived from alignment at Contig_14:1075298..1080104+ (Tribonema minus UTEX_B_3156 ) ATGGTCGACGTGGTGCACAAGACGTGCGAGGCGCCAGGCTGCCGGCTGCT GGCCAACTACGGCACGCGCGGCGTGGGCAACAAGGGGCGCCAGTTCTGCG CGGCGCACAAGCTGCCGGACATGTGCCACGTGGCGCACCGCGCGTGCGCG CGCAAGGGCTGCGAGGGCAACGCCAAGTACGGGTTCGCCGGCGCGCCCAA GACGCACTGCTGCCGCCACAGGCTGGAGGGCATGGAGTGCTCTACGTCAT CGCGTGAGCGCTGCCGCGCGTCCGGCTGCACCAGCAAGGCGCACTGGGGC GAGCCCGGGCGCGCTTCGCAGTGGTGCGAGCACCACCGGCCGCAGGGCAC CGTGACCAAGGAGCAATGCCGCTGGCCGGGATGCAGCACAAGGGCGGGGT TCAAGAAGGGGGCTTCGGGGGGTGTCAGCGGGTACTGTGCGCTTCATGTC GAGCAGGCTGGCATTGAGGGGGGTGCGTCGCCCGCTGCAGTTGCGGCCTC CAGGGGCAAGGCGCGACGCCGCCTCTCCAGCGACAGCACACACGCAACCG CTACCGGCAGCGAAGACGAGCACCACGCAGCAGCGGAGGCGACGGTGGCG CCGCCGCACGCAGCGGTGGCGGCAGCGGCGGCGGCGGCAGCGGAGGCGGT GACGCTGCGCCGCAGCCAGCGCAAGCGCTCCGCGCACGTGCTCTCGGACT TTGAGTTTGAGTACTACGGCGACGACTGCGCGCACGGCGCCGCCGACGAC AACAGCAGCTCCGGCGGCATGGAGGACGACAACACCGACGGCGCGGAGGA CAGCGACGGCAGCGGCGGCAGCGGCGGCGGCGCTCAATTTCGGCAACTGG GTGATGACCGCGTGCGCATGCGCTGCGGCAGCGGTGGCGGCAGCAGCTGC GCGGCAGCGCAGGAGGGCAGCAGCAGCGGCAGCGGCGACGGCGGCGGTAG CGAGGCGCTGCTGCCGGACACGCTGGCGCTGTCGCTGCTGCTGGGGCTCA AGTCGGAGTGCCTGGCGAGCGCGGCCACAAGCACTGCCGCGGCGGCGGAT GCGGCGGCAGCTGCGGCGCGTGTGAGCGCGGCGCACCACCTGCCGAAGCG CGTGCGGCGCGACTGGTGCAAGCGCGAGCGCAGCGCAGGCGCAGCAGCTG CGCAGTCGGCAGCAGCAGCAGCAGCGGGAGCTCAGGCGCCATCTGCGGCG GCGCAGCGGCCATGGCCAGCGCCGCTGTTCCGCTCCGAAGCTCTGGCGGC AGCGGCGCCTGCGCAGGGGGGGTGGGGCATGGAGAGCGCTGCGTGCGGTG CGCTGCGCGGGCTGTCGTGCACGCAGGAGGAGGGCGCCGCTGCGGCAGTG CTCCTCATGGGGTGGCGCATGGGGCGCGCGTAG back to top
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