Trimin1|347643|estExt_Genemark1.C_Ctg_140066 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347643
Unique Name	Trimin1\|347643\|estExt_Genemark1.C_Ctg_140066
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	619

Homology

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BLAST of jgi.p|Trimin1|347643 vs. uniprot
Match: A0A836CK79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK79_9STRA)

HSP 1 Score: 1102 bits (2850), Expect = 0.000e+0
Identity = 618/618 (100.00%), Postives = 618/618 (100.00%), Query Frame = 0

Query:    1 MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQHARDALDAIINGATPGLQAHNGSYSSGLSVSGTFPTTTTLNPAAANHAWTLRHPTNAAVIVLQQLLGGGVPLHEAALLSNMTPTTVPGDYIMCPKDADFALFAQPYADFLREQYAHGVRAFVCIGTRNEAAVLDALCPRGHTAVCLAEHNNSRLLLVLGVGENGSDGRQFLLLVPHEHMSHVMWQALSRSSRLWLLAGLVHCVSALQALRGKARPDAKGLLELVGPEKAEGKRSGWYSSGAYAESVMRGARRLQFIRAFGEEEGLAKWQAWYTDCKRRAGKKSHEAWEAGEYTNIVKEDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXEANWVQGVNVPDTCLQRVRAIVRDVAASSKALTGLTLSEDGDEDGAYTLYTAPNKPANAAAYNDVLRAVTAVTGLGADAFKTHLGSKRGRESRVCKADDNVKDFARQMQLDGVALWKMKPEAVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 618
            MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQHARDALDAIINGATPGLQAHNGSYSSGLSVSGTFPTTTTLNPAAANHAWTLRHPTNAAVIVLQQLLGGGVPLHEAALLSNMTPTTVPGDYIMCPKDADFALFAQPYADFLREQYAHGVRAFVCIGTRNEAAVLDALCPRGHTAVCLAEHNNSRLLLVLGVGENGSDGRQFLLLVPHEHMSHVMWQALSRSSRLWLLAGLVHCVSALQALRGKARPDAKGLLELVGPEKAEGKRSGWYSSGAYAESVMRGARRLQFIRAFGEEEGLAKWQAWYTDCKRRAGKKSHEAWEAGEYTNIVKEDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXEANWVQGVNVPDTCLQRVRAIVRDVAASSKALTGLTLSEDGDEDGAYTLYTAPNKPANAAAYNDVLRAVTAVTGLGADAFKTHLGSKRGRESRVCKADDNVKDFARQMQLDGVALWKMKPEAVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA
Sbjct:    1 MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQHARDALDAIINGATPGLQAHNGSYSSGLSVSGTFPTTTTLNPAAANHAWTLRHPTNAAVIVLQQLLGGGVPLHEAALLSNMTPTTVPGDYIMCPKDADFALFAQPYADFLREQYAHGVRAFVCIGTRNEAAVLDALCPRGHTAVCLAEHNNSRLLLVLGVGENGSDGRQFLLLVPHEHMSHVMWQALSRSSRLWLLAGLVHCVSALQALRGKARPDAKGLLELVGPEKAEGKRSGWYSSGAYAESVMRGARRLQFIRAFGEEEGLAKWQAWYTDCKRRAGKKSHEAWEAGEYTNIVKEDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXEANWVQGVNVPDTCLQRVRAIVRDVAASSKALTGLTLSEDGDEDGAYTLYTAPNKPANAAAYNDVLRAVTAVTGLGADAFKTHLGSKRGRESRVCKADDNVKDFARQMQLDGVALWKMKPEAVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 618

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BLAST of jgi.p|Trimin1|347643 vs. uniprot
Match: A0A835Z1A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A9_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.070e-43
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0

Query:  530 VKDFARQMQLDGVALWKMKPEAVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 618
             KD A++M LDGVALWKM+PEAVKDLAIDEKGTSVTG AGLTKGKALAVVM RYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA
Sbjct:    7 AKDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKGKALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 95

[Close]

BLAST of jgi.p|Trimin1|347643 vs. uniprot
Match: A0A835YTA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.820e-35
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0

Query:    1 MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQHARDAL 106
            MLAFAAARDSSSSKRH+KLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQ+WEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQ ARDAL
Sbjct:    1 MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQRARDAL 106

[Close]

BLAST of jgi.p|Trimin1|347643 vs. uniprot
Match: A0A836CKF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-10
Identity = 47/96 (48.96%), Postives = 58/96 (60.42%), Query Frame = 0

Query:  431 ANWVQGVNVPDTCLQRVRAIVRDVAASSKALTGLTLSEDGDEDGAYTLYTAPNKPANAAAYNDVLRAVTAVTGLGADAFKTHLGSKRG--RESRVC 524
            ANWV+G +VP   L+RVR IV+ +AA  +AL GLTL+    E G Y L TA N+ A    Y  VL A       G+ AFKTHLGS+RG  + SR C
Sbjct:  558 ANWVEGADVPAQHLERVRTIVKAIAALDEALRGLTLTAVPGETGVYHLSTATNQRATPEVYIAVLAAA------GSSAFKTHLGSRRGGYKSSRDC 647

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347643 vs. uniprot

BLAST of jgi.p|Trimin1|347643 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A836CK79_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z1A9_9STRA	1.070e-43	91.01	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YTA4_9STRA	3.820e-35	97.17	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CKF5_9STRA	1.320e-10	48.96	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_14	contig	Contig_14:630337..637319 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347643	mRNA_3185	Tribonema minus UTEX_B_3156	mRNA	Contig_14 630337..637319 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347643|estExt_Genemark1.C_Ctg_140066 ID=Trimin1|347643|estExt_Genemark1.C_Ctg_140066|Name=jgi.p|Trimin1|347643|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=619bp
MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPPRAKKARVAASS
SAAADAGELGELIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQ
HARDALDAIINGATPGLQAHNGSYSSGLSVSGTFPTTTTLNPAAANHAWT
LRHPTNAAVIVLQQLLGGGVPLHEAALLSNMTPTTVPGDYIMCPKDADFA
LFAQPYADFLREQYAHGVRAFVCIGTRNEAAVLDALCPRGHTAVCLAEHN
NSRLLLVLGVGENGSDGRQFLLLVPHEHMSHVMWQALSRSSRLWLLAGLV
HCVSALQALRGKARPDAKGLLELVGPEKAEGKRSGWYSSGAYAESVMRGA
RRLQFIRAFGEEEGLAKWQAWYTDCKRRAGKKSHEAWEAGEYTNIVKEDP
SAAGKKSHEAWEAGEYTNIVKEDPSAAGKEANWVQGVNVPDTCLQRVRAI
VRDVAASSKALTGLTLSEDGDEDGAYTLYTAPNKPANAAAYNDVLRAVTA
VTGLGADAFKTHLGSKRGRESRVCKADDNVKDFARQMQLDGVALWKMKPE
AVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPA
GYRPVTLKAVQRPPPSSA*