mRNA_3238 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|275424
Unique NamemRNA_3238
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z8K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K2_9STRA)

HSP 1 Score: 627 bits (1618), Expect = 4.190e-227
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1 
Query:    1 MRLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANSAKWNYHNNFDSNHDNFNSNARHGSAAPQRIASNWTPSRVGRSNEVAAAF 951
            MRLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANSAKWNYHNNFDSNHDNFNSNARHGSAAPQRIASNWTPSRVGRSNEVAAAF
Sbjct:    1 MRLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANSAKWNYHNNFDSNHDNFNSNARHGSAAPQRIASNWTPSRVGRSNEVAAAF 317
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BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z9W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W2_9STRA)

HSP 1 Score: 273 bits (698), Expect = 4.260e-86
Identity = 151/283 (53.36%), Postives = 186/283 (65.72%), Query Frame = 1 
Query:    1 MRLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRL----------KRRASKVRGAPASRDSSGADDNGT-ADFPGG----GNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANS 804
            MRLV G RNA+AWTG  ASL TA YCVHELCY++++VA   ASCAQF+A+F++RG SN LAFLHLFLRANAVN+ NPKWPPWR  GI L + T+G +A    TR AKP  +PP P RC+EFI P+P TL W  QL+CH+ FA FFIWPL  HMR +R A  G +  P    +R                       +++   A  +GT A+ P G     +  VY+ LV RA  S+  SALFT++AAVL +L VYGV+  +PVVG SILDNGFTL SI+FANS
Sbjct:   31 MRLVYGVRNAMAWTGFLASLFTAIYCVHELCYYFVDVADQTASCAQFKAFFILRGASNSLAFLHLFLRANAVNSLNPKWPPWRRAGIALTVVTLGVLALVAATRGAKPTASPPHPSRCQEFIAPIPATLKWTLQLICHIAFAGFFIWPLLGHMRMLRKA--GLAQHPPHAVERCCGGCAWWCSXXXXXXXXXXXXXAQEDGDAPGSGTPAETPTGFTTPRHDTVYRQLVLRAVVSVAASALFTVVAAVLVMLDVYGVVDGIPVVGLSILDNGFTLGSIFFANS 311
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835ZIT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 7.240e-82
Identity = 136/259 (52.51%), Postives = 175/259 (67.57%), Query Frame = 1 
Query:   31 IAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGD-VYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANS 804
            I WTG  AS++T  YCV+ELCY+Y+N+A   A CA F+ W VMR  SN LAFLHLFLRA+AVNA NP WPPWR FGI L++AT+  + A   TR+A+ V NPPF +RCE+  EPV F L W+ QLLCH+ F+  FI+PL  HMR VRAA    +  P +   R+ RR  +     A+ ++   +D+ TA   G   GD VYQ LV RA  SL  S+LFT+  AV+  L ++G +SD+P+V F+ILDNGFTL +IYFANS
Sbjct:   31 IHWTGFLASVLTIFYCVYELCYYYVNMASRDAHCAVFKVWIVMRTASNALAFLHLFLRADAVNAINPNWPPWRRFGIALLVATLIMLIAVAATRSARLVRNPPFGERCEQSYEPVSFALKWVVQLLCHITFSLMFIYPLVDHMRAVRAAGLAVAHTPRSFLRRVLRRTVQKPSVTATENARAREDSNTAPVTGSMRGDTVYQRLVRRAVISLVASSLFTIAVAVMVFLDIFGAVSDMPLVAFAILDNGFTLGAIYFANS 289
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BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z9N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.730e-37
Identity = 110/269 (40.89%), Postives = 137/269 (50.93%), Query Frame = 1 
Query:    4 RLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWF-VMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRA-SKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFANS 804
            R V    NA+  TG  ASLI  TYC  +L YFY     +  SC Q +    V +G SN LAFLHLFLRA+AVN  N  W PWR FGI L      T+ A   TRTA  V       RC+   +   F   W+ QLL HV F+  F++PLR HM+++  A        A           S V  +  SR S  A+   T    G    DV++ LV RA  S+  S+ FTL+ A++  +       D+PVV  S LDNG TLASIYFANS
Sbjct:   32 RCVLRKANAMNITGFMASLIAVTYCFLKLIYFYTGA--EELSCDQLKIILGVGQGSSNALAFLHLFLRADAVNKINTHWRPWRWFGIALTALNWATLLAVCFTRTA--VLATSGSQRCKFTFDQSTFEAKWVVQLLNHVVFSMMFVFPLRQHMKEMHRAGVEHQRQHAXXXXXXXXAPNSSVAMSTGSRTS--AEPTATGSSRGA---DVFRRLVWRATLSMAISSAFTLVVAIMVFVQFADPNIDLPVVALSNLDNGLTLASIYFANS 291
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z0T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.010e-32
Identity = 91/268 (33.96%), Postives = 131/268 (48.88%), Query Frame = 1 
Query:   22 RNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPF-PDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAH---TGSSVAPATLFD----RLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFAN 801
            RN +  TG  A++I A Y + +  + +  +     +  +     + +G+SN  AFLHLFLRA+A+NA NPKWPPWR  GIVL +A      A +  R    +    F  +RC  + E +     W+ QL+ HV F+ FF WPL  HMR +  A+      +VA +  F      L+R  +  RG                         VY+ LV RA   +  S++FTL+  +L+V+       D+P+   SILDNG TL SI FAN
Sbjct:   51 RNMMNATGFLAAIIAAVYTLVKALHLFSGIGLSECNALRISLG-LGQGLSNGFAFLHLFLRADAINAINPKWPPWRAVGIVLTVANWVCFLAVSFLRKGSAIDQ--FGAERCVFYFEEISSNFKWVLQLINHVLFSLFFAWPLVKHMRAMERANMDTVAGTVARSGFFSVLLYLLRRHRTSSRGVA-----------------------VYERLVRRAVVPMVVSSVFTLVVTILNVIDFQAPDLDIPITSLSILDNGLTLGSICFAN 292
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A836CG65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG65_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.020e-24
Identity = 77/223 (34.53%), Postives = 98/223 (43.95%), Query Frame = 1 
Query:   16 GTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFT 684
            G RN I  T   A+LI   Y   EL YFY  +     +C    AW V+R ISN LAFLHLFLRA+  N+ NP W  WR  GI L +     +  A   R    +P      RC    E V FTL W++QL+CHV            HM +++ +   S++                    A+R SS  D             DVY+ LV RA  +L  SA FT
Sbjct:   56 GKRNTITATALLAALICVVYTTWELAYFYAGLMAQPDTCKTATAWGVLRSISNALAFLHLFLRADVANSINPHWHMWRRVGIALTVINWALLIVAPALRRITLIPTK-LGARCSAQYESVSFTLMWVSQLVCHVAXXXXXXXXXXRHMNELKQSTADSALEAGV----------------AARGSSRDD-------------DVYRTLVRRAAGALALSATFT 248
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A836CF01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF01_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.090e-19
Identity = 62/155 (40.00%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:    7 LVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVR 471
            LV   RNAI  T  AA+ +++   V +L YF++    D + C    AW +MR  S+ LAFLHLFLRANA           R FG +L+LA V  +          P        RC     PV F L W AQL  HV FA  F+WPL SH+R +R
Sbjct:   31 LVMRKRNAITVTALAAAFLSSLNTVWQLAYFHLGKMTDLSICKIGYAWGIMRTTSSALAFLHLFLRANAAXXXXXXXXXXRAFGALLLLANVLLLVLVPSLWLLTPK-RYDTGVRCVVIFPPVTFLLMWAAQLASHVVFAGLFVWPLLSHVRAMR 184
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BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z0Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.400e-14
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 1 
Query:   52 ASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDV---RAAHTGSSVAPATLFDRLKR 528
            AS +  TY  ++  Y++  +       +      +++G  N +AFLHLF RA+A+NA NP+W   R F + L++A    +    V R  K V N P   RC      V F + ++ QL+ HV  +AFF+WPL  H+R +   R A  G+S + A      KR
Sbjct:   48 ASALALTYAAYKTGYWFAGLGPYYDCQSVLMVAGILQGACNSMAFLHLFQRADAINALNPRWRYLRIFALFLVIANWAVLGGVVVDRKFKEV-NGPDGTRCLFIPGLVVFRVKFLVQLVNHVVQSAFFVWPLIVHIRLLDKGRRAGLGTSSSVAVYRHMAKR 208
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835ZCN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-9
Identity = 78/280 (27.86%), Postives = 113/280 (40.36%), Query Frame = 1 
Query:   25 NAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAWFVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAATVTRTAKPVPNPPFPDRCEEFIEPVPFTLN------------WIAQLLCHVF-------FAAFFIWPLRSHMRDV---RAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFA 798
            N  A+  +A  LI A Y   +L Y++  +    +         +++G  N +AFLHLFLRA+A+N+ N KW   R  G+VL+ A    + A  V RT K V  P   DR      P    L              ++ +   +F        +AFF+WPL  H+R +   R A  G+S   A                                        +Y+ +  RA A++    L TLL  V++VL ++      P    SILD    LASIYFA
Sbjct:   37 NLSAFLASALGLIYAAY---KLGYWFAGIGAFFSCRNVMMVGGIVQGACNSMAFLHLFLRADAINSLNSKWRYLRVVGMVLVAANWAALGAVIVDRTYKEVQGP---DRTRCLFVPGTVVLRVNHTHHISNRPPGVSLIEVRLFPLLPVGVQSAFFVWPLTVHIRLMDKGRKAGLGTSATCA----------------------------------------IYRHMARRAVAAML---LSTLLTVVVTVLVIFAQRKAYPTSVLSILDISGILASIYFA 267
[Close]
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Match: A0A835Z900_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z900_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.050e-7
Identity = 44/151 (29.14%), Postives = 67/151 (44.37%), Query Frame = 1 
Query:  346 DRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLRSHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTADFPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVGFSILDNGFTLASIYFA 798
            +RC    E   F L W+ QL  H+  A  F+WPL +H+R VRA   G S   +         +     +  SR S                 ++++AL+ RA  ++  S  + ++   L +         +PV   +ILDNG TLASIY+A
Sbjct:  115 ERCVWTFEEATFKLKWLVQLFNHILMAGLFVWPLLAHVRGVRATSLGRSGGGSXXXXXXXXXSVTKARSSFSRTS-----------------ELWEALIMRAVVAMAISVTYCVIMTGLVIAKYDDPSLPIPVFALAILDNGVTLASIYYA 248
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|275424 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z8K2_9STRA4.190e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9W2_9STRA4.260e-8653.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIT3_9STRA7.240e-8252.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9N7_9STRA9.730e-3740.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0T7_9STRA4.010e-3233.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG65_9STRA1.020e-2434.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF01_9STRA2.090e-1940.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0Y4_9STRA3.400e-1433.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCN3_9STRA1.480e-927.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z900_9STRA3.050e-729.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1019555..1025426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|275424|gm1.3268_g
Max annot lvl2759|Eukaryota
EggNOG OGs2EKQU@1|root,2SQJE@2759|Eukaryota
Evalue2.03e-09
Seed ortholog2880.D7FXM9
Hectar predicted targeting categorysignal peptide
TranscriptId275746
TrackFilteredModels1
ProteinId275424
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|275424gene_3238Tribonema minus UTEX_B_3156 geneContig_14 1019555..1025426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|275424Trimin1|275424|gm1.3268_gTribonema minus UTEX_B_3156 polypeptideContig_14 1019555..1025426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3238_1exon_3238_1Tribonema minus UTEX_B_3156 exonContig_14 1019555..1019698 +
exon_3238_2exon_3238_2Tribonema minus UTEX_B_3156 exonContig_14 1021015..1021239 +
exon_3238_3exon_3238_3Tribonema minus UTEX_B_3156 exonContig_14 1022657..1022895 +
exon_3238_4exon_3238_4Tribonema minus UTEX_B_3156 exonContig_14 1023443..1023596 +
exon_3238_5exon_3238_5Tribonema minus UTEX_B_3156 exonContig_14 1024193..1024366 +
exon_3238_6exon_3238_6Tribonema minus UTEX_B_3156 exonContig_14 1025409..1025426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3238CDS_3238Tribonema minus UTEX_B_3156 CDSContig_14 1019555..1019698 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Trimin1|275424|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_14:1019555..1025426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCGTGAGCGGCACGCGCAACGCCATCGCGTGGACCGGCACTGC
AGCATCGCTCATCACGGCCACGTACTGCGTCCACGAGCTGTGCTACTTCT
ACATCAACGTCGCGCAGGACAGGGCGAGCTGCGCGCAGTTTCAGGCGTGG
TTTGTGATGCGCGGCATCAGCAACATCCTCGCCTTCCTGCACCTCTTCCT
GCGCGCCAACGCTGTCAACGCATTCAACCCCAAGTGGCCCCCCTGGCGCT
GCTTTGGGATCGTCCTCATGCTCGCAACGGTGGGGACCATCGCCGCGGCT
ACGGTCACACGGACGGCCAAGCCCGTTCCTAACCCGCCTTTTCCTGACCG
CTGTGAAGAGTTCATTGAGCCCGTCCCCTTCACGCTCAACTGGATCGCGC
AGCTGTTGTGCCACGTCTTCTTCGCGGCGTTCTTCATCTGGCCGCTGCGC
AGCCACATGCGCGACGTGCGCGCTGCACATACGGGGTCGAGCGTGGCGCC
TGCCACGCTCTTTGACCGACTGAAGCGGCGCGCGTCCAAAGTCAGGGGCG
CGCCCGCTAGCAGGGACAGCAGCGGCGCTGACGACAATGGCACCGCTGAC
TTCCCCGGCGGCGGCAACGGTGACGTCTATCAGGCGCTCGTCACGAGGGC
GTTTGCCAGCCTCACGGGCAGCGCGCTGTTCACGCTGCTCGCAGCAGTGC
TCAGCGTGCTCAGCGTGTACGGGGTGCTGAGCGATGTGCCAGTGGTTGGC
TTTTCCATACTGGACAACGGCTTCACACTGGCCTCCATATACTTTGCAAA
CAGCGCAAAGTGGAACTACCACAACAACTTCGATAGTAACCACGACAACT
TCAATAGTAATGCGAGGCACGGCTCAGCTGCGCCGCAACGCATCGCGAGC
AACTGGACACCGAGCAGGGTGGGCCGCTCAAATGAGGTGGCGGCAGCGTT
CTAA
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protein sequence of jgi.p|Trimin1|275424

>Trimin1|275424|gm1.3268_g ID=Trimin1|275424|gm1.3268_g|Name=jgi.p|Trimin1|275424|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp
MRLVSGTRNAIAWTGTAASLITATYCVHELCYFYINVAQDRASCAQFQAW
FVMRGISNILAFLHLFLRANAVNAFNPKWPPWRCFGIVLMLATVGTIAAA
TVTRTAKPVPNPPFPDRCEEFIEPVPFTLNWIAQLLCHVFFAAFFIWPLR
SHMRDVRAAHTGSSVAPATLFDRLKRRASKVRGAPASRDSSGADDNGTAD
FPGGGNGDVYQALVTRAFASLTGSALFTLLAAVLSVLSVYGVLSDVPVVG
FSILDNGFTLASIYFANSAKWNYHNNFDSNHDNFNSNARHGSAAPQRIAS
NWTPSRVGRSNEVAAAF*
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mRNA from alignment at Contig_14:1019555..1025426+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Trimin1|275424|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5872bp|location=Sequence derived from alignment at Contig_14:1019555..1025426+ (Tribonema minus UTEX_B_3156 )
ATGCGCCTCGTGAGCGGCACGCGCAACGCCATCGCGTGGACCGGCACTGC
AGCATCGCTCATCACGGCCACGTACTGCGTCCACGAGCTGTGCTACTTCT
ACATCAACGTCGCGCAGGACAGGGCGAGCTGCGCGCAGTTTCAGGTGCCG
TTGCAGCTATCATTCTTCTCTTTTTCAAAAGAAGTGTGTGTTGAGAGTGC
CACAGTGACCTTTTCCAGTTACAGTTGAGCTGTGCTACTTGTGCATCAAT
GTCGCTGCGCGCAGTTTTAGGTGCCGTTGTAGTTTTCATGTGTGTTGAGT
GTGCCGCAGTGACTTTGTTCAGTTGAAGTTGAGCTGTGCTACTTCAACAT
CAACGTCGCGCACAACAGGGCGAGCTGTGCGCAGGTCCACGTGCCATTGT
ATTTATCATCATTTTTTAGTGTGTGTTGAGTGCCACAAGTGACCTTGTCC
AGTCGAAGCTGAGCTGTGCTACTTCAACATCAATGTCGCGCAGGACAGGG
CCAGCTGCGCGCAGTTCCGGGTGCCTTTGAAGTATTCTGGTGGTGGCTCT
GTTTGACTCGGGGCCAATTGATGCGGCAGCGGCGACCACGGTTACTGGTG
GAAGGCATTCACTTGACGGCTGACCACACCTGGTCACCTAGAGCTCTACA
ATCTTTTGATTCGTTACCTTTGTAGTGTTCATAGTTTGCTGAGTGTGCCA
CAGCGAAATTTTGTACTTGAAGTCGCTGAACAGTTGCTGGCACTCTTCCC
TGTGTCACAGAAAAATGACGTGTCGTGCAAGTGACTGTGTCCATTTGAAG
TTGTCCATTTGAAGTTGCCGTGAAGCCGCATCAGATCTCGTTGACAATTG
GAGTCGCTGGGCAGTCACTGCGTTCTGCCCTGCTGTACCACCGTCTTACC
ACAAGCATTTCATGACAGAGTACCCGTGGTCATTGCTGCGTGCTGAGTTA
CTGGTATATGATGGGCTCAAAGTGACCAGGTGTGTAAAACATCGACTTCT
CAGTGTTTTTGACAGTGTTTTTGCTCTTTTCTCTTGCAAGCGTGTTCGCT
GCGGCTTCTACAATTGACCGGATCCCTGAAGCCACATAACCTAATCTCCT
CCAAGTTGCAGCAGGCCCAGGTGATAGCGTTGCCAGAGATGCTGTGCAAG
TCACCGGCAGGCGCAATATCGCTGCATGAATACATCTTGATGCAGCGCAT
ACATCTTGCGGTTTGGATACATTTGACCAACACTTCAATGTATACAGTGT
ACACAGTAAAAATAATCTGAAGCCTACGATCAAACTCTGGTATTCCATTA
AGTGTGCATGCTCAGTACTTCTAAATCGTATTACCAGCCTTGCCCTTTCA
TGCCCCCTTCTAACCCCCACCCCACCCCACCCCCCATTATCCCAAACGCC
ATTTTGCCTCAAAGCACGCACAAACCTATGTCGATTTCATCACGGTTTCT
CCGTTTACAGGCGTGGTTTGTGATGCGCGGCATCAGCAACATCCTCGCCT
TCCTGCACCTCTTCCTGCGCGCCAACGCTGTCAACGCATTCAACCCCAAG
TGGCCCCCCTGGCGCTGCTTTGGGATCGTCCTCATGCTCGCAACGGTGGG
GACCATCGCCGCGGCTACGGTCACACGGACGGCCAAGCCCGTTCCTAACC
CGCCTTTTCCTGACCGCTGTGAAGAGTTCATTGAGGTATGTACTTCGACT
TCCAGCTGGATTGCTCATATAAAAACGCATCAAAAGATGGTAGAGCTCTA
GGTGACAATCATTGCATCTGGTGCTGCGCGCACACTATGTCTTTAGACAG
GGCAGTCTTAGTAGAGGTTTGCGGCTGGCGAAGGTCCAGTGGGGCCTTGT
CAGTGCTCTGCATTGCAGCGCACACGCCTGCTACTCGGAGGCTTTCAACG
TGCTGTCCTGTCGTACAAGGCAGTTCACCTCTGCACGTTAGGCCCATACC
CAGAGAACAAACTTGCAGGCTGGTGTAGCACACAAATAGTGCAAGGCGGC
GCGGTCAACCGCAGGCGACACACTTGAACTCCATGAATTTGCAGGAGTAG
AAGCAGGTGATGAAGTGGTGGTATGCTGCCCCACAGCAAACCTGAGAGTG
CCAGCACTGGATATTCATGGCTGAGATATCAAGTCACAGTGTTTAAAGCC
AATCACAGTATTTAAAGCCAATCTCGGAAAGCTCGCCAACAAGCTGCGCA
TCAGTGGCGGCGTCTGACTGTGTCACTTGCACAATTTCAAGGGGACCCTA
GCGTGCGATATCCAGGACCCGCACCAGCAACACTCGTTCACCCTTCCTCA
GTGCCACTCCCATGAGCCTGACTGACAGTGCTCATTGAACGACTAACAAC
ACCGCGTAAGCCTGCTGCTGTCCTGGGAAATGTGTGCTACTTGCAGCCAA
CAACACCGCACCCATTTCTCAACAACACCCCTAGCCTCACTTCTGCAACG
CACTGCGCGCCACTTTTTGCTGTCAGACACTATGGTACACTCGATAATGT
TTAAGCTGAGTGCTGGCGAACATGATGTTCTGATGATGGTGGTCCACTGT
GAACAAAGGCTGACTTTTGAAGTCAGAGATGTGCGCTGTGTTTGACACCC
GAGCATCTTGATCGGCACCTTGATCGCTGCTGTTAGGCTTGTGCAAAGAG
TCCTTCATGACATCATTGGCTCAATGGCATAGTTCAACGGCATCAGTACG
ACCTGTGTGAGCGTTCATGCAGGCGAGTGCTACTTCAACTCATGCGCTCA
GCGAAGCTGTCTCGCCGCCCCCTCCGTCCCATGAGTTCAAATACAACTGC
GCCACTGCTGCGCAACATCTCTTCGTTGCTGGCTTTTCTCACCCACATAC
ACGCGTCAAAGCAAGCACCGCAGTACAGCATGGCAGCGTCAGCAATGGCA
GCTGAGCAATGACATTGTGAGCAAAGAGTGCCCCCCCCTCCCCACCGCCC
CGAGCGCTGCTGCAGCCCATCCCCTTCACTCTCTTCACGCATGCAAATCC
ATCATCACGATCACCCCCGCACACAACATTCCCGTCAAGGACGACAGCTG
AGCCATGCCCCCCCCCCCCCCCCGCGCCCCGCCCCCCTGCGCGCTGCCGC
AGCCCGTCCCCTTCACGCTCAACTGGATCGCGCAGCTGTTGTGCCACGTC
TTCTTCGCGGCGTTCTTCATCTGGCCGCTGCGCAGCCACATGCGCGACGT
GCGCGCTGCACATACGGGGTCGAGCGTGGCGCCTGCCACGCTCTTTGACC
GACTGAAGCGGCGCGCGTCCAAAGTCAGGGGCGCGCCCGCTAGCAGGGAC
AGCAGCGGCGCTGACGACAATGGCACCGCTGACTTCCCCGGGTTTTCAAG
GCGAGGAGTCAAAGTGCATGCTAGCTGTTTGTTAAGTGCTTTGATTACCG
CAGTTGAAGCGGATCAGCTGTAAGTGCTGCCACCGATGGTTAAGGGAAGG
GGGGGCCCAGGGTGCGGCGAGGCACACTGTTTACTGCTGCTGTACTATGG
AGTTCTGGTGGTACTGGCGCCACACGCATACTGATGCTTCTAGTTTAATC
GAACTACTTGTGAGTTGTGGTGATCACATTGGTGGCATGAACCACCATGT
GCAGTAGGAAACGTGCGGGTGCATGCTCAGCAGGACCTCCACTTGCACAA
ACTCGTTGTCAGCGGTGCCCGTGCACCCCCTGCCCCAGAACGCTGCTCTT
GCAAACTTGGTGACTGAGCTGGCTGATGTTTCTACTCTGCTTTCTACTTG
CACAGCACTCAAGCTCCAGCTTCCGATTTGTCACACGCTGCAGCTGCACA
ACGGGAACATGTAGAAGTACCTCGCACGCCCTACCATTTGCAGCAACACT
CAACTACTAGCTGTGTGCTCGTCTGGCCTCCCTTACAGCGGCGGCAACGG
TGACGTCTATCAGGCGCTCGTCACGAGGGCGTTTGCCAGCCTCACGGGCA
GCGCGCTGTTCACGCTGCTCGCAGCAGTGCTCAGCGTGCTCAGCGTGTAC
GGGGTGCTGAGCGATGTGCCAGTGGTTGGCTTTTCCATACTGGTGAGGCA
CTCTCTCAACAAGCGTACTAGAGCACTCTTTCAACAGGTGTACTGTACTC
TTTCAACAGCACTCTCTCGACAGGCGTACAGTACTCTTACAGTACTTCGA
AGTATGATATGTTGGACTCTCATTAATAGTCATTATGCTCTCATTACATG
TAGAAGGACATGCCTTCTGGCTCATGAGGGGTGACACGCTGCATCGCACA
AGCGTGCTGCTGCAACCTGCAAAGAGCAGCACTGTCTATAACTTGCACCA
GCGCACAAAAAATTAGATGTCACTGGCCGCTGGCAATCATGGTGGAGCAT
GATGTTGCAGCAGTTGTAGCGCTGCAACCTTCTATTTCTGGCTACTGATT
GATGGCAGTACAAGAGCAGGGCGTGGAGTTGCAGCATCAATGCTGCCATG
TCTAGTCTCGAGTCAATGTCAATTTGCACGCATTTACACTTGCTGCACTT
GTCTGCAACCGCTACTGGAGTGCACAAGACGAGGCAGCGACTGCTGGTAT
TAATACGCTCAAATGTATAACTACTTCAAAGTATTTAAATGATGCATAAA
CTGCACCCTGACTCACCTTTGCTGCTCGCACGTTGCAGGACAACGGCTTC
ACACTGGCCTCCATATACTTTGCAAACAGCGCAAAGTGGAACTACCACAA
CAACTTCGATAGTAACCACGACAACTTCAATAGTAATGCGAGGCACGGCT
CAGCTGCGCCGCAACGCATCGCGAGCAACTGGACACCGAGCAGGGTGGGC
CGCTCAAATGAGGTGCGATAACAAAAACATCCAGTAATCAGCTTGTCAAG
ATGCGACTTATTTCATGTTGATCACACAGAAGTAATCAGCATTCGAGATC
GACCTCGCTTCTGTGCCCCCATGGGGGTTGCAACACGTGATCAGCTCAAG
ACTGGCCTCACATTAGCTGACATCAGCACCACGTGACAATGTTGTGTGCC
ATTTACTGCACAGCTTGTCATTCAAGCTCCTCAACAACAATGTGTGGAGG
TTCAAAAACGTGTCGGGCGTTGGTGTGATGAGCCAGTGCAAGTGACGGCG
TGTATTCTGTAGTGGCACCCTTGCCAGCTGTTGATTACAAACGTATGTCT
TTTCCTAGCCATGTGTGCTGCTCAGATACAGAGATATGTCTTCCGATGAT
CCAAGTCAACAGGCAATGCACAGGATGATGCGTGTGTCGTTGCAGTGTTG
CATGCACAACAGGAGCTGAATGGTCTGTTTCGACATACAGAACACCTGAA
ACGTGTGTGCGTGGCGTGCGTTCCTTGGAACTGTCGTCTGCCGGCTAGAG
GTACAATGTGACTGACCGGCGACACACACACGCGTTTTCTGCCATTCGCG
CATACAGACCAGCGGCGCGCACCGCAAGGCACATCCGTCGAAGACAGCAG
CCAATGGCAGCATAGCCACCATGCCATTGCTCCATTAGATGGTGCACACA
TAGACACCCTGGAGTCCAGTACTGCCAGCCCGGTCTAGTGCACGTGAGCT
GCCCCTGCTGAACTTCAACAACAAGGTCAGCTTCGGCAGCCATTGGTTGG
CCGACCTGCAGGCCCAGGGGGCCTGTCAGCGTCACTGTGCTGCCACCAGC
GGCAGCTAGCAGCCGTCATTGGCACTGTGAGGCGTACCGGTACCTCGCAG
CAGCAGCAGCAGCAGTGCCTTCGCCTCTTCCGCACACGCCTGATGTTGAG
CACACTCGCATGCTCCCGAGCGCCCGTCAACCACATGGAGCGTCATCAAC
AGCAGAGCTGCCACTGCTGCTGCAGCTGCACAACTGTATGTTGTCGCCCC
GCAGGTGGCGGCAGCGTTCTAA
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Coding sequence (CDS) from alignment at Contig_14:1019555..1025426+

>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Trimin1|275424|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_14:1019555..1025426+ (Tribonema minus UTEX_B_3156 )
ATGCGCCTCGTGAGCGGCACGCGCAACGCCATCGCGTGGACCGGCACTGC
AGCATCGCTCATCACGGCCACGTACTGCGTCCACGAGCTGTGCTACTTCT
ACATCAACGTCGCGCAGGACAGGGCGAGCTGCGCGCAGTTTCAGGCGTGG
TTTGTGATGCGCGGCATCAGCAACATCCTCGCCTTCCTGCACCTCTTCCT
GCGCGCCAACGCTGTCAACGCATTCAACCCCAAGTGGCCCCCCTGGCGCT
GCTTTGGGATCGTCCTCATGCTCGCAACGGTGGGGACCATCGCCGCGGCT
ACGGTCACACGGACGGCCAAGCCCGTTCCTAACCCGCCTTTTCCTGACCG
CTGTGAAGAGTTCATTGAGCCCGTCCCCTTCACGCTCAACTGGATCGCGC
AGCTGTTGTGCCACGTCTTCTTCGCGGCGTTCTTCATCTGGCCGCTGCGC
AGCCACATGCGCGACGTGCGCGCTGCACATACGGGGTCGAGCGTGGCGCC
TGCCACGCTCTTTGACCGACTGAAGCGGCGCGCGTCCAAAGTCAGGGGCG
CGCCCGCTAGCAGGGACAGCAGCGGCGCTGACGACAATGGCACCGCTGAC
TTCCCCGGCGGCGGCAACGGTGACGTCTATCAGGCGCTCGTCACGAGGGC
GTTTGCCAGCCTCACGGGCAGCGCGCTGTTCACGCTGCTCGCAGCAGTGC
TCAGCGTGCTCAGCGTGTACGGGGTGCTGAGCGATGTGCCAGTGGTTGGC
TTTTCCATACTGGACAACGGCTTCACACTGGCCTCCATATACTTTGCAAA
CAGCGCAAAGTGGAACTACCACAACAACTTCGATAGTAACCACGACAACT
TCAATAGTAATGCGAGGCACGGCTCAGCTGCGCCGCAACGCATCGCGAGC
AACTGGACACCGAGCAGGGTGGGCCGCTCAAATGAGGTGGCGGCAGCGTT
CTAA
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