mRNA_3241 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131542
Unique NamemRNA_3241
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835ZE77_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE77_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.110e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK
Sbjct:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 143          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835Z9L0_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.180e-42
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   64 HIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            HIINCT  + AD    DFT+ RV +ED P  NI  AF PACA+I  AR+AGGATLVHCRKG+SRSATI LA+ V HE MT L+ALR L++ RP +SPNAGFMAQLL+LE  + G TT+D+ K
Sbjct:   33 HIINCTADI-ADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 153          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A1V9Z4X6_9STRA (Dual specificity protein phosphatase 2-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4X6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.750e-33
Identity = 69/143 (48.25%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            LF+GG DC  D   L S G+THI+NCTR    D       +LRVAV D P V I   F+ AC+ I  A D   A LVHC  G+SRSATIVLA+L+ H GM  L+AL YL++ R ++SPN GFM +L+ELE  +    ++D+ +
Sbjct:   39 LFIGGNDCVNDLPALLSMGVTHIVNCTRET-PDYFPEHVEYLRVAVTDEPEVAIDAFFDEACSFINKAVDNKRACLVHCSHGMSRSATIVLAYLISHRGMQLLEALDYLRARRRVVSPNVGFMQRLVELEIKVHHAASLDLQE 180          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A067CZI3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZI3_SAPPC)

HSP 1 Score: 112 bits (281), Expect = 1.590e-28
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDM 423
            L++GG DC  D   L +  I+H++NCTR    +       +LRV + D P + I   F+ ACA I  A +   A +VHC  G+SRSATIVLA+LVK   M  LDAL+YL+S R ++SPN GFM +LLELE A+    ++D+
Sbjct:   40 LYIGGNDCVNDLDVLGTMDISHVVNCTRET-PNYFPDRVEYLRVPITDEPEMEIDMYFDDACAFIHKAVENHMACMVHCSHGMSRSATIVLAYLVKIRKMRLLDALQYLRSLRRVVSPNIGFMQRLLELEMAVHDANSLDL 179          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: UPI001403A6D0 (dual specificity protein phosphatase 14 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403A6D0)

HSP 1 Score: 110 bits (275), Expect = 7.160e-28
Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTI 417
            L+L    C+ + S LR+RGIT ++N +  V ADARL    ++RV V DCP   IS  F+P    I      GG TLVHC  G+SRSA++ +A+L++ EG+   DA R++++ RP + PN+GF  QL+  E+ L G+ ++
Sbjct:   14 LYLSNGRCASNASLLRARGITCVVNASLEV-ADARLPGVRYVRVPVPDCPHAPISRYFDPVAERIAGEARRGGRTLVHCAAGVSRSASLCIAYLMRGEGLVLRDAFRWVRARRPAVCPNSGFWRQLIRYERELFGRCSV 151          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A1V9YRT3_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.100e-27
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            L++GG DC  D   L++  ITHI+NCTR    +     F +L++ + D P VNI   FE  C  I  A +   A +VHC  G+SRSATIVLA+L++++ MT L AL YL+S R ++SPN GFM QLL LE ++    ++D+ +
Sbjct:   43 LYIGGNDCVNDLLVLQTMDITHIVNCTRET-PNYFTEHFEYLQIPINDDPDVNIDMYFEEICTFIHKAIENKMACMVHCSHGMSRSATIVLAYLMQYKEMTLLQALTYLRSLRRVVSPNIGFMQQLLTLELSIYQVNSLDLQE 184          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: I0YQM9_COCSC (Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQM9_COCSC)

HSP 1 Score: 109 bits (272), Expect = 6.570e-27
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            L++GGA  +     LR  G+TH++N T  +      A F  LR AV D    +I   F+ A A I  AR++GGA LVHC +G SRS T+VLA+ ++ +  T   AL ++ + RP +SPNAGFMA+L+ LE++L G  T+ + K
Sbjct:   36 LWVGGAVEANSLHLLRHLGVTHVLNATDDLLLPDPDAAFRSLRCAVRDMEEEDIGRFFDSAAAFIDAARESGGAALVHCHEGKSRSVTLVLAYFMQAKEWTLKQALDFVSAARPQVSPNAGFMARLIRLEESLHGTKTVKLKK 178          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: S4S1S4_PETMA (Protein-tyrosine-phosphatase n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4S1S4_PETMA)

HSP 1 Score: 107 bits (266), Expect = 1.940e-26
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   22 CSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTI 417
            C+ + S LR+RGIT ++N +  V ADARL    ++RV V DCP   IS  F+P    I      GG TLVHC  G+SRSA++ +A+L++ EG+   DA R++++ RP + PN+GF  QL+  E+ L G+ ++
Sbjct:   31 CASNASLLRARGITCVVNASLEV-ADARLPGVRYVRVPVPDCPHAPISRYFDPVAERIAGEARRGGRTLVHCAAGVSRSASLCIAYLMRGEGLVLRDAFRWVRARRPAVCPNSGFWRQLIRYERELFGRCSV 161          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A0A9YIJ5_LYGHE (Dual specificity protein phosphatase 10 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YIJ5_LYGHE)

HSP 1 Score: 106 bits (265), Expect = 7.290e-26
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCT-RGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALR 402
            L++G A  + D   LR RG++H++N T     A A  +  T+ ++   D    NI + FE A + I  AR   G+ LVHC+ G+SRS TI +A+++KH G+T ++A + +++ RP+ISPN  FM QLLELEQ LR
Sbjct:   70 LYVGNARDARDADVLRGRGVSHVLNVTLTPTPAPADPSGVTYRQLPASDSTQQNIKQYFEEAFSFIEEARKNNGSVLVHCQAGVSRSPTIAIAYIMKHRGVTMVEAYKTVKTARPIISPNLNFMGQLLELEQHLR 204          
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.960e-26
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 LFLGGADCSLDYSELRSRGITHIINCTRGVCAD---------ARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429
            L + G D +LD   +++ GITHIINCTR  C +              F +L+++++D    +I+ A  P+  +I  AR  GG  LVHC  G+SRSATI +A+LV+H  MT LDA+   +  R   SPN GF++QLL+LE  +    T+D+ K
Sbjct:   74 LAIAGEDITLDKDAMKAMGITHIINCTRH-CPNLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSALAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQHRNMTLLDAMHLTKDRRRQTSPNPGFVSQLLDLEHVVHACHTLDLGK 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE77_9STRA1.110e-97100.00Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A835Z9L0_9STRA5.180e-4263.11Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A1V9Z4X6_9STRA6.750e-3348.25Dual specificity protein phosphatase 2-like n=1 Ta... [more]
A0A067CZI3_SAPPC1.590e-2845.39Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
UPI001403A6D07.160e-2841.73dual specificity protein phosphatase 14 n=1 Tax=Pe... [more]
A0A1V9YRT3_9STRA5.100e-2744.06Carbohydrate-binding protein n=1 Tax=Thraustotheca... [more]
I0YQM9_COCSC6.570e-2741.96Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (... [more]
S4S1S4_PETMA1.940e-2642.42Protein-tyrosine-phosphatase n=1 Tax=Petromyzon ma... [more]
A0A0A9YIJ5_LYGHE7.290e-2642.22Dual specificity protein phosphatase 10 n=1 Tax=Ly... [more]
A0A835ZD16_9STRA8.960e-2640.13Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1040395..1040995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131542|gw1.14.16.1
BRITEko00000,ko00001,ko01000,ko01009
KEGG Pathwayko04010,map04010
KEGG koko:K04459,ko:K14165
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2453@1|root,KOG1718@2759|Eukaryota
Evalue3.25e-28
Seed ortholog157072.XP_008877060.1
Hectar predicted targeting categoryother localisation
TranscriptId131864
TrackFilteredModels1
ProteinId131542
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131542gene_3241Tribonema minus UTEX_B_3156 geneContig_14 1040395..1040995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3241_1exon_3241_1Tribonema minus UTEX_B_3156 exonContig_14 1040395..1040457 +
exon_3241_2exon_3241_2Tribonema minus UTEX_B_3156 exonContig_14 1040630..1040995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3241CDS_3241Tribonema minus UTEX_B_3156 CDSContig_14 1040395..1040457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131542Trimin1|131542|gw1.14.16.1Tribonema minus UTEX_B_3156 polypeptideContig_14 1040395..1040995 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCTTTCTGGGGGGCGCCGACTGCTCCCTGGATTACTCTGAGCTTCGAAG
CAGAGGCATCACGCACATCATCAACTGCACCCGAGGAGTTTGTGCCGATG
CCAGGCTGGCGGACTTCACCTTTCTGAGGGTGGCAGTAGAGGACTGCCCA
ACTGTCAATATCAGCGAAGCTTTTGAGCCCGCATGCGCCCTCATCGGCAC
GGCGCGGGACGCGGGGGGGGCGACGCTGGTGCACTGCAGGAAAGGCATCA
GCCGGTCGGCGACCATAGTGTTGGCGTGGCTCGTCAAGCATGAGGGGATG
ACTGCCTTGGACGCGCTGCGGTATCTCCAGAGTTGTCGCCCCCTGATCAG
CCCCAATGCGGGCTTCATGGCGCAGCTGCTGGAGCTGGAGCAGGCGCTCC
GTGGCCAGACCACCATCGACATGGACAAG
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protein sequence of jgi.p|Trimin1|131542

>Trimin1|131542|gw1.14.16.1 ID=Trimin1|131542|gw1.14.16.1|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=143bp
LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCP
TVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGM
TALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK
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mRNA from alignment at Contig_14:1040395..1040995+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=601bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )
CTCTTTCTGGGGGGCGCCGACTGCTCCCTGGATTACTCTGAGCTTCGAAG CAGAGGCATCACGGTGAGGCAACCGCGCCGTGCACAGGGTTCACTCTTTT TGGCAATTCGCCAACCTGCACACTTTGCCGCGAGATGGCAGCTTTGTCAA ACCTTCACACTTCATTAGAAGATGTGGTGCTCTCGCGATGGTAATGGTGC TGCCCTTGTTGGCCCTCACTTTCGCTCAATCACAGCACATCATCAACTGC ACCCGAGGAGTTTGTGCCGATGCCAGGCTGGCGGACTTCACCTTTCTGAG GGTGGCAGTAGAGGACTGCCCAACTGTCAATATCAGCGAAGCTTTTGAGC CCGCATGCGCCCTCATCGGCACGGCGCGGGACGCGGGGGGGGCGACGCTG GTGCACTGCAGGAAAGGCATCAGCCGGTCGGCGACCATAGTGTTGGCGTG GCTCGTCAAGCATGAGGGGATGACTGCCTTGGACGCGCTGCGGTATCTCC AGAGTTGTCGCCCCCTGATCAGCCCCAATGCGGGCTTCATGGCGCAGCTG CTGGAGCTGGAGCAGGCGCTCCGTGGCCAGACCACCATCGACATGGACAA G
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Coding sequence (CDS) from alignment at Contig_14:1040395..1040995+

>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=429bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )
CTCTTTCTGGGGGGCGCCGACTGCTCCCTGGATTACTCTGAGCTTCGAAG
CAGAGGCATCACGCACATCATCAACTGCACCCGAGGAGTTTGTGCCGATG
CCAGGCTGGCGGACTTCACCTTTCTGAGGGTGGCAGTAGAGGACTGCCCA
ACTGTCAATATCAGCGAAGCTTTTGAGCCCGCATGCGCCCTCATCGGCAC
GGCGCGGGACGCGGGGGGGGCGACGCTGGTGCACTGCAGGAAAGGCATCA
GCCGGTCGGCGACCATAGTGTTGGCGTGGCTCGTCAAGCATGAGGGGATG
ACTGCCTTGGACGCGCTGCGGTATCTCCAGAGTTGTCGCCCCCTGATCAG
CCCCAATGCGGGCTTCATGGCGCAGCTGCTGGAGCTGGAGCAGGCGCTCC
GTGGCCAGACCACCATCGACATGGACAAG
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