Trimin1|352987|estExt_Genemark1.C_Ctg_1390010 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352987
Unique Name	Trimin1\|352987\|estExt_Genemark1.C_Ctg_1390010
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	266

Homology

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BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A836CNF4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNF4_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 1.100e-148
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0

Query:    1 MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGGNAAGQT 265
            MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGGNAAGQT
Sbjct:    1 MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGGNAAGQT 265

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BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A836C1U8_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C1U8_9CHLO)

HSP 1 Score: 145 bits (367), Expect = 1.620e-37
Identity = 80/189 (42.33%), Postives = 112/189 (59.26%), Query Frame = 0

Query:   18 RWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVR-HSHLISSLEYP--YLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCA-VPAAGVFVGERARFVKADWLNRAE 202
            RW R  G   IS +G      +G++ W+VY+  LPTSGKHY  I FP  R CC A G +P+T A V    H IS+   P  ++++L G G GP+ A  +  +G+  P  AG++LDADARM V ++H+D  N   A+R D++P P  FV+ +PKH ++  +L  A +PA GVF G+ ARF K  W    E
Sbjct:   97 RWARATGA-KISDDGLAIK--AGDASWAVYTPTLPTSGKHYMVIDFPEDRLCCIAAGVIPSTVASVPVGQHNISNAAPPCQHMIALKGIGAGPSEAT-NDRAGSAKPLQAGVFLDADARMLVFVDHNDPLNAARAIRLDNIPTPAVFVIQAPKHPLNFAILPAAQLPAGGVFTGDSARFDKVAWKREQE 281

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352987 vs. uniprot

BLAST of jgi.p|Trimin1|352987 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CNF4_9STRA	1.100e-148	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836C1U8_9CHLO	1.620e-37	42.33	Uncharacterized protein n=2 Tax=Edaphochlamys deba...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..247

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_139	contig	Contig_139:90076..92017 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352987	mRNA_16721	Tribonema minus UTEX_B_3156	mRNA	Contig_139 89602..92017 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352987|estExt_Genemark1.C_Ctg_1390010 ID=Trimin1|352987|estExt_Genemark1.C_Ctg_1390010|Name=jgi.p|Trimin1|352987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAV
LPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSL
MGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAV
RFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNR
AEGAAAAADSEEESDFEMEEDEEEDGDEEEEEEGEEEGEEEEGEEGGGAG
GGDIVVAGGNAAGQT*