mRNA_16721 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A836CNF4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNF4_9STRA) HSP 1 Score: 424 bits (1089), Expect = 1.260e-145 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 Query: 1 MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAA 615 MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAA Sbjct: 1 MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVRHSHLISSLEYPYLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCAVPAAGVFVGERARFVKADWLNRAEGAA 205
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A836C1U8_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C1U8_9CHLO) HSP 1 Score: 145 bits (367), Expect = 8.260e-36 Identity = 80/189 (42.33%), Postives = 112/189 (59.26%), Query Frame = 1 Query: 52 RWERIEGPGPISANGTRFTSASGESGWSVYSAVLPTSGKHYFAIHFPRSRCCCTAFGFVPATCARVR-HSHLISSLEYP--YLVSLMGAGKGPTRALFSMTSGTPGPFTAGIYLDADARMAVMINHDDSTNPRGAVRFDDLPQPLTFVLTSPKHTMDATLLRCA-VPAAGVFVGERARFVKADWLNRAE 606 RW R G IS +G +G++ W+VY+ LPTSGKHY I FP R CC A G +P+T A V H IS+ P ++++L G G GP+ A + +G+ P AG++LDADARM V ++H+D N A+R D++P P FV+ +PKH ++ +L A +PA GVF G+ ARF K W E Sbjct: 97 RWARATGA-KISDDGLAIK--AGDASWAVYTPTLPTSGKHYMVIDFPEDRLCCIAAGVIPSTVASVPVGQHNISNAAPPCQHMIALKGIGAGPSEAT-NDRAGSAKPLQAGVFLDADARMLVFVDHNDPLNAARAIRLDNIPTPAVFVIQAPKHPLNFAILPAAQLPAGGVFTGDSARFDKVAWKREQE 281
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835ZKC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKC7_9STRA) HSP 1 Score: 723 bits (1865), Expect = 2.480e-258 Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 1 Query: 1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV 1527 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV Sbjct: 1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV 509
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835Z900_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z900_9STRA) HSP 1 Score: 145 bits (366), Expect = 8.690e-36 Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = 1 Query: 1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 M +T F E+++L+V M+ LQTT AFG RY ++++A++NLTGLLAS L+LF++ WA+T+WF G+G +SC IQVVNG+CLSSSNALA ++LV VH L++ APN LGGE RC WTFEE TFKLK Sbjct: 1 MGTSTAFVPLFEVFALTVTLMIALQTTVAFGKRYLSRNRALLNLTGLLASFLSLFYTLWALTIWFCGIGGLSCTVIQVVNGMCLSSSNALA---------------------------------VVLVAVHTLLSGYAAPNTALGGEERCVWTFEEATFKLK 129
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: D7FXM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM9_ECTSI) HSP 1 Score: 121 bits (304), Expect = 9.370e-28 Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 1 Query: 19 FPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSI-SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRW-PVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 F + EI+S V V L T+ FG R + K A +N+TGL AS++ + +S +A+ WF GLG + C + VNG C+S+SNA F+HLF+KADASN+ NP+W +R + + NW+ L VVHAL+ E L G RCK+TFE +F+LK Sbjct: 6 FGLFFEIFSEGVVFTVALITSVCFGERCW-KRSAPLNITGLAASLIAVSYSVFALEYWFNGLGDLYDCATLAAVNGTCMSASNAFTFLHLFVKADASNQRNPKWRKFYRWVGVATTAFNWVTLAVVHALLQGTEIDG--LDGP-RCKFTFEMNSFRLK 159
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835Z0T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T7_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.990e-21 Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 28 YVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 Y EI+ L++ +GLQ T FG R+ T + ++N TG LA+++ ++ F+G+G C A+++ GL SN AF+HLFL+ADA N +NP+WP WR I+ VANW+ + V L K + G E RC + FEE + K Sbjct: 22 YFEIFCLAITFTIGLQVTFFFGERWLTMRRNMMNATGFLAAIIAAVYTLVKALHLFSGIGLSECNALRISLGLGQGLSNGFAFLHLFLRADAINAINPKWPPWRAVGIVLTVANWVCFLAVSFL--RKGSAIDQFGAE-RCVFYFEEISSNFK 171
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835ZCN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN3_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.530e-19 Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1 Query: 31 VEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSI-SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPN 429 +E+ +L + + LQTT FG+RYF+ + +NL+ LAS L L ++ + + WF G+G+ SC + +V G+ + N++AF+HLFL+ADA N LN +W R ++ + ANW L V T KE P+ Sbjct: 5 LEVAALGMLLTISLQTTVFFGHRYFSYRRVWMNLSAFLASALGLIYAAYKLGYWFAGIGAFFSCRNVMMVGGIVQGACNSMAFLHLFLRADAINSLNSKWRYLRVVGMVLVAANWAALGAVIVDRTYKEVQGPD 138
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835Z9N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.290e-18 Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 19 FPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 F AY E L+ ++ L+ FG R + +N+TG +AS++ + + + ++TG +SC ++++ G+ SSNALAF+HLFL+ADA NK+N W WR I NW L+ V T A + G RCK+TF++ TF+ K Sbjct: 6 FFAYFETTCLTTTFIIALEVGWFFGERCVLRKANAMNITGFMASLIAVTYCFLKLIYFYTGAEELSCDQLKIILGVGQGSSNALAFLHLFLRADAVNKINTHWRPWRWFGIALTALNWATLLAVCFTRTAVLATS----GSQRCKFTFDQSTFEAK 157
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835ZIT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT3_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.270e-15 Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1 Query: 109 KHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISC-MAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 +H +I+ TG LASVLT+F+ + + ++ + S A+ V + ++SNALAF+HLFL+ADA N +NP WP WR I +VA I+L+ V A + + NP G RC+ ++E +F LK Sbjct: 26 RHPLMIHWTGFLASVLTIFYCVYELCYYYVNMASRDAHCAVFKVWIVMRTASNALAFLHLFLRADAVNAINPNWPPWRRFGIALLVATLIMLIAVAATRSARLVRNPPFG--ERCEQSYEPVSFALK 150
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A6H5L5W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W9_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.070e-15 Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 214 SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRW-PVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486 SC + VNG C+S+SNA F+HLF+KADASN+ NP+W +R + + NW+ L VVHAL+ + L G RCK+TFE +F+LK Sbjct: 3 SCTTLAAVNGTCMSASNAFTFLHLFVKADASNQRNPKWRKFYRWVGVATTAFNWVTLAVVHALLEGTQVDG--LDGP-RCKFTFEMNSFRLK 91
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A836CG65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG65_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.200e-12 Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 124 INLTGLLASVLTLFFSTWAITLWFTGL-GSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKL 483 I T LLA+++ + ++TW + ++ GL G+ S SNALAF+HLFL+AD +N +NP W +WR I V NW +L+V AL P LG ARC +E +F L Sbjct: 61 ITATALLAALICVVYTTWELAYFYAGLMAQPDTCKTATAWGVLRSISNALAFLHLFLRADVANSINPHWHMWRRVGIALTVINWALLIVAPALRRITLIPT-KLG--ARCSAQYESVSFTL 178
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Match: A0A835Z9W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W2_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.250e-9 Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 1 Query: 1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCL-SSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEA---PNPNLGGE------ARCKWTFE 465 MSHAT F LSV+ + ++T FG R + + TG LAS+ T + + +F + + Q L +SN+LAF+HLFL+A+A N LNP+WP WR A I V +L +V A K P+P+ E A KWT + Sbjct: 1 MSHAT-FDDLFTTSCLSVSCTIAVETGWFFGMRLVYGVRNAMAWTGFLASLFTAIYCVHELCYYFVDVADQTASCAQFKAFFILRGASNSLAFLHLFLRANAVNSLNPKWPPWRRAGIALTVVTLGVLALVAATRGAKPTASPPHPSRCQEFIAPIPATLKWTLQ 164 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
BLAST of jgi.p|Trimin1|352987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16721 ID=mRNA_16721|Name=jgi.p|Trimin1|352987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1272bp|location=Sequence derived from alignment at Contig_139:89602..92017- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCAACGGAGACATCGCCCTGGCCAGTCGCAGTGGCCGCCCTGGAGTGback to top protein sequence of jgi.p|Trimin1|352987 >Trimin1|352987|estExt_Genemark1.C_Ctg_1390010 ID=Trimin1|352987|estExt_Genemark1.C_Ctg_1390010|Name=jgi.p|Trimin1|352987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp MSTETSPWPVAVAALECRWERIEGPGPISANGTRFTSASGESGWSVYSAVback to top mRNA from alignment at Contig_139:89602..92017- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16721 ID=mRNA_16721|Name=jgi.p|Trimin1|352987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2416bp|location=Sequence derived from alignment at Contig_139:89602..92017- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_139:89602..92017- >mRNA_16721 ID=mRNA_16721|Name=jgi.p|Trimin1|352987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=798bp|location=Sequence derived from alignment at Contig_139:89602..92017- (Tribonema minus UTEX_B_3156 )back to top |