mRNA_14000 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176580
Unique NamemRNA_14000
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: A0A835ZCG0_9STRA (Exo84_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG0_9STRA)

HSP 1 Score: 1061 bits (2745), Expect = 0.000e+0
Identity = 610/610 (100.00%), Postives = 610/610 (100.00%), Query Frame = 1 
Query:    1 MDLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEALLGPAGGPQWADQTLVVWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVLKLVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLALWCGGVFPEV 1830
            MDLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEALLGPAGGPQWADQTLVVWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVLKLVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLALWCGGVFPEV
Sbjct:    1 MDLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEALLGPAGGPQWADQTLVVWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVLKLVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLALWCGGVFPEV 610
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 1.470e-130
Identity = 271/612 (44.28%), Postives = 351/612 (57.35%), Query Frame = 1 
Query:    4 DLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKL--SPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEALLGPAGGPQWADQTLV-VWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVLKLVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLALWCGGVFPEV 1830
            DL+ FF D  FDAGEY K F+E   AS A+ R E+LE L+RQTE +LR EVVRNYQ FMHAT +I+SME  +  L++LL + A TL +F+ + LVE   PA K   + +N+                 XXX     GLKLPEWLD+AP ELEELLLERKH+ A  LIR+V+ F+AN++NATNLG GV  IF + + MAA ++ RL+ EI+  NT T WGFREHK NF LLI LG ++ AA   V ERSA+IRRSL +VE TADPL+YV  +S TFFGQ++D V+AFLKLFC +    HE R+ KTG+S AY QVY G+K CG+APFCRLV+W++ Q+DQYA L+GRQI A+ +G        ++    A        G  + PVA++LF+ VSLMLE+ F AAA LN  GFPVGV LASRL      FL ++    +D +++A  +D           PEAL    G  +  DQ      L SSA   V E R  L+                                      SYY+R  F +L+P ++  +  +       TLA    R DE  L  +++ A        G    PLLA WC  + PE+
Sbjct:   18 DLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSRAVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKS-ARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITREQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVSCPLVRPEALC--VGTQEEEDQQAKRAQLTSSARILVLELRDILD-YALVLLEPPPPEPEAFSAEDAGVSSPGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDE--LSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEI 623
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: A0A6H5J6Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Z2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.280e-16
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  643 TAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQ 831
            T WGFREHK NF LLI LG ++ AA   V ERSA+IRRSL +VE TADPL+YV  +S TFFGQ
Sbjct:    7 TVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ 69
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: A0A7R9UG23_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG23_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.140e-14
Identity = 68/241 (28.22%), Postives = 116/241 (48.13%), Query Frame = 1 
Query:  175 FMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNT--FTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQH 891
            FM A A++  +E  +  +R+ L+ A   L+  +++ L +  + A +   T        LRA       D         L+LP WL+ AP ELEE +LER  + A  LI +V+ F A + + + +   + ++F +    A  L+ RL+ E+   N      WGFR  ++++  LI LGY +AAAAA +  R+   RR+L +++   D   +V+ ++  F   +      F  LF +     H
Sbjct:   22 FMRAGAEVTKVESKVALVRSTLNDAENALNALENLSL-DLGETALREEETQLN-----LRA------EDSMNATANAALRLPRWLEVAPEELEEAILERHSKTAEALIVKVRNFEAQIHDPSAVHDRLREVFEKVRRGAHLLASRLLKEVKTGNAKGSEVWGFRAQEQSYRQLIALGYGEAAAAAFLGNRTHDARRALGVLDVGGDFTAHVQMLTRAFVSVMRAATEEFFSLFATGGNFSH 250
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: A0A4D9D5U3_9STRA (Exo84_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5U3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.140e-10
Identity = 60/232 (25.86%), Postives = 109/232 (46.98%), Query Frame = 1 
Query:  415 LPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEIT----GTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSP--------AYMQVYAGMKACG--SAP---------FCRLVMWLDNQVDQYARLVGRQI 1041
            LP W+  A  +L++ ++E +   AV  I +++A  A++  +        D+  +  +   E++ R+I E+     G N    + F +  +    L+ L  A+ A    V+ +  ++ R+LH  E + +PL YV  ++  FFG + D   +F  LF  + +++  S A   G +P        A+       +  G  S P         F RLV+W++ +V Q+A LVGRQ+
Sbjct:  265 LPVWVAAALEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQGRVTSKGKEIAGRIIRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFAVS-VSEGRSEAITAGGTPITPSPNFEAFTSTDVENQRGGPMSTPGPSVRPPKCFLRLVLWVEEEVRQFAVLVGRQL 495
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BLAST of jgi.p|Trimin1|176580 vs. uniprot
Match: W7TYT0_9STRA (Cullin repeat-like-containing domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.930e-10
Identity = 58/232 (25.00%), Postives = 110/232 (47.41%), Query Frame = 1 
Query:  415 LPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEIT----GTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSP--------AYMQVYAGMKACG--SAP---------FCRLVMWLDNQVDQYARLVGRQI 1041
            LP W+  A  +L++ ++E +   AV  I +++A  A++  +        D+  +  +   E++ R++ E+     G N    + F +  +    L+ L  A+ A    V+ +  ++ R+LH  E + +PL YV  ++  FFG + D   +F  LF + ++++  S A   G +P        A+       +  G  S P         F RLV+W++ +V Q+A L+GRQ+
Sbjct:  264 LPAWVAAAMEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQRRVTSKGKEIAGRIVRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALF-TVSVSEGRSEAITAGGTPITPPPNFEAFTSTDVENQRGGPMSTPWPSVRPPECFLRLVLWVEEEVRQFAVLLGRQL 494
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176580 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZCG0_9STRA0.000e+0100.00Exo84_C domain-containing protein n=1 Tax=Tribonem... [more]
D7FH43_ECTSI1.470e-13044.28Exocyst complex component, putative n=1 Tax=Ectoca... [more]
A0A6H5J6Z2_9PHAE1.280e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UG23_9STRA1.140e-1428.22Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D5U3_9STRA1.140e-1025.86Exo84_C domain-containing protein n=1 Tax=Nannochl... [more]
W7TYT0_9STRA1.930e-1025.00Cullin repeat-like-containing domain protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:361830..365116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176580|e_gw1.138.69.1
Description8. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGs28H5G@1|root,2QPI9@2759|Eukaryota,1MCNA@121069|Pythiales
Evalue1.95e-10
Seed ortholog36331.EPrPI00000016206
Hectar predicted targeting categoryother localisation
TranscriptId176902
TrackFilteredModels1
ProteinId176580
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176580gene_14000Tribonema minus UTEX_B_3156 geneContig_138 361830..365116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176580Trimin1|176580|e_gw1.138.69.1Tribonema minus UTEX_B_3156 polypeptideContig_138 361830..365116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14000_4exon_14000_4Tribonema minus UTEX_B_3156 exonContig_138 361830..362723 -
exon_14000_3exon_14000_3Tribonema minus UTEX_B_3156 exonContig_138 363133..363300 -
exon_14000_2exon_14000_2Tribonema minus UTEX_B_3156 exonContig_138 363958..364575 -
exon_14000_1exon_14000_1Tribonema minus UTEX_B_3156 exonContig_138 364967..365116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14000CDS_14000Tribonema minus UTEX_B_3156 CDSContig_138 364967..365116 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14000 ID=mRNA_14000|Name=jgi.p|Trimin1|176580|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1830bp|location=Sequence derived from alignment at Contig_138:361830..365116- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTGATAGAGTTTTTTGGCGATGAGAACTTCGATGCGGGTGAGTA
TGTCAAGAAGTTCTATGAGAACAACTCCGCCAGCGGAGCTTCCGCCCGAT
GCGAGGAGCTGGAGTCACTGCGGAGGCAAACAGAGGAGAGCCTCAGGCAA
GAGGTCGTGCGCAACTACCAGACCTTCATGCACGCGACGGCGCAGATCCA
GTCCATGGAGAAGGACATCGACGCGCTGCGCAACCTCCTCTCCACCGCCG
CGACAACGCTCAGCACCTTCCAGTCCATCCGCCTCGTCGAGCGCCCCGAC
CCCGCCTCCAAGCTCTCCCCCACCAACGCCGAGGGGGGGGCGTTCGGGCT
GCGAGCAGGCGCTACCGGCCGCGGCGGCGACGGCGGCGGCGGCGCGGGGC
GCGGCGGCCTGAAGCTGCCCGAGTGGCTGGATAAGGCGCCGACAGAGCTA
GAGGAGCTGCTGCTGGAGCGAAAGCACGAGGCGGCGGTGCGGCTCATACG
GCAGGTCAAGGCGTTCGCGGCGAATGTGCGCAACGCGACGAACCTCGGCG
CGGGCGTCGCGGACATCTTCGCGCAGGCGGACGCCATGGCCGCGGAGCTC
TCGTGCCGCCTCATCACGGAGATCACGGGGACGAACACGTTCACCGCGTG
GGGCTTCCGCGAGCACAAGAAGAACTTTGAGCTGCTCATCGACCTCGGCT
ACGCAGACGCCGCGGCGGCGGCGCTCGTGAAGGAGCGCAGCGCGCTGATC
CGGCGCTCGCTGCACATGGTGGAGGCGACTGCTGACCCACTCACGTATGT
ACGCGAAATCAGCGGCACATTTTTCGGGCAGCTCATGGACACTGTGGCAG
CGTTCCTCAAGCTGTTCTGCAGCAACAACATTGCTCAGCACGAGAGCCGA
GCCGCCAAGACCGGCAGGAGCCCAGCTTACATGCAGGTGTACGCGGGCAT
GAAGGCGTGCGGCTCCGCGCCGTTCTGCCGCCTCGTCATGTGGCTCGACA
ACCAAGTCGACCAGTACGCGCGCCTCGTGGGCCGCCAGATCACCGCCGTG
GGCCTCGGCGCGCACGCCGCGCGCGCCGCCGACGCCGCGCTTCCCCGCAC
CGCCCCCCCCCCAAAATCCCCCCCCCCGGGGGACCCCGTCGACCCCGTCG
CCGCGACGCTCTTCGCGACCGTCTCGCTCATGCTGGAGGACGCCTTCGGC
GCCGCGGCGCGGCTCAACAGGCACGGCTTCCCCGTGGGGGTCGCGCTCGC
GTCGCGCCTGCACGCGCACGCAGGCGCGTTCCTCGAGGCCTTCGCGCGCC
GCGCGCGCGACGCCGTGCTGGAGGCCGCCTCGCGCGACGCCCTCGCCGTC
CACGAGTACCGCTTCGCGCCGCCGGAGGCGCTGCTCGGCCCCGCGGGCGG
CCCGCAGTGGGCGGACCAGACGCTCGTCGTCTGGCTCAACTCCAGCGCCG
CTGCCGCGGTCTGCGAGGCGCGCTCCTTCCTCGAGTGCTGCCTCATGCTG
CTGGACCCGCCGCCGCTGCCGGCGGCGGACGTCGGCGGCGGCGGCGGCGG
CGGCGGCAGCGTGGCGGAGGCTGCCGCGGCGGCGGCGGTGCTCGGCGGCA
GCTACTACTCGCGCGCGCACTTTGCGGACCTGCAGCCGCAGGTGCTCAAG
CTGGTGGCGTCGATCGCGAGCGCGGGCGCATCGGCGACGCTCGCGGCGAC
GCTGCGGCGCGATGACGAGGGGCTGTTGCGGCAGTCGGAGGCGCGCGCGG
CGTGCGAGGCGGCCATCGTCTACGGCAAGCGCGTCGCGCCGCTGCTGGCG
CTGTGGTGCGGCGGCGTGTTCCCGGAGGTG
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protein sequence of jgi.p|Trimin1|176580

>Trimin1|176580|e_gw1.138.69.1 ID=Trimin1|176580|e_gw1.138.69.1|Name=jgi.p|Trimin1|176580|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=610bp
MDLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQ
EVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPD
PASKLSPTNAEGGAFGLRAGATGRGGDGGGGAGRGGLKLPEWLDKAPTEL
EELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAEL
SCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALI
RRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESR
AAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAV
GLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFG
AAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAV
HEYRFAPPEALLGPAGGPQWADQTLVVWLNSSAAAAVCEARSFLECCLML
LDPPPLPAADVGGGGGGGGSVAEAAAAAAVLGGSYYSRAHFADLQPQVLK
LVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLA
LWCGGVFPEV
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mRNA from alignment at Contig_138:361830..365116-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14000 ID=mRNA_14000|Name=jgi.p|Trimin1|176580|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3287bp|location=Sequence derived from alignment at Contig_138:361830..365116- (Tribonema minus UTEX_B_3156 )
ATGGATCTGATAGAGTTTTTTGGCGATGAGAACTTCGATGCGGGTGAGTA
TGTCAAGAAGTTCTATGAGAACAACTCCGCCAGCGGAGCTTCCGCCCGAT
GCGAGGAGCTGGAGTCACTGCGGAGGCAAACAGAGGAGAGCCTCAGGCAA
GTGCCATGGCACCGACAACAAGTGTTTCTTGAGATGTCCTCATTCGGCTC
GCTCTATCGGCTGTGGCGCCTCCGCTGCTGCCAAGTACTACTACCTGCAG
ATATCCCGATGTGTACTACTGGGGTTTCTGCACTCGCCCACTAGGCATCC
AGAATGCTGCCGTTCGGCGTATCGTACATGATCAGAGTGATGCCAAGCTT
TGTGTGCCTGGCGCCTATTTGGGACCTCACAAACAGACCTGCTGCTTCAA
TTGTGGTCGGTCAACTCACCCACTTGCAGTGCAGCACGCACCGCCACATC
AGCACCGGCTGAGCACCCGCCATCACCGCTCACACGCCCGCGACCGCTGC
CCCCCCCCCACACACACACGCCCACTCCCTGCTGCAGGCAGGAGGTCGTG
CGCAACTACCAGACCTTCATGCACGCGACGGCGCAGATCCAGTCCATGGA
GAAGGACATCGACGCGCTGCGCAACCTCCTCTCCACCGCCGCGACAACGC
TCAGCACCTTCCAGTCCATCCGCCTCGTCGAGCGCCCCGACCCCGCCTCC
AAGCTCTCCCCCACCAACGCCGAGGGGGGGGCGTTCGGGCTGCGAGCAGG
CGCTACCGGCCGCGGCGGCGACGGCGGCGGCGGCGCGGGGCGCGGCGGCC
TGAAGCTGCCCGAGTGGCTGGATAAGGCGCCGACAGAGCTAGAGGAGCTG
CTGCTGGAGCGAAAGCACGAGGCGGCGGTGCGGCTCATACGGCAGGTCAA
GGCGTTCGCGGCGAATGTGCGCAACGCGACGAACCTCGGCGCGGGCGTCG
CGGACATCTTCGCGCAGGCGGACGCCATGGCCGCGGAGCTCTCGTGCCGC
CTCATCACGGAGATCACGGGGACGAACACGTTCACCGCGTGGGGCTTCCG
CGAGCACAAGAAGAACTTTGAGCTGCTCATCGACCTCGGCTACGCAGACG
CCGCGGCGGCGGCGCTCGTGAAGGAGCGCAGCGCGCTGATCCGGCGCTCG
CTGCACATGGTGAGCGTCGCAGTCGACACAGAGGGGGGCTCAGATGGGGG
TGCTCGCGTTGCTGCTGATGCTTTTATCATTGCCTATGTGTGCTGCAGCG
AGCACTCGACCAGCATGTGTCTGGGAGCACGTGACTTCTTGTACCTGGCA
GTGCTTGGGGTGCTCCAGCGTCTGATTGACAGTTCATCGGACGCCGCCAT
TGCTCATCCCTGCGTTCTGCGGATTGCGGTAGAGGGAGCAGCGCTGCAGT
AGAACATGCGAGCACACACACATATGCTTCACATCGGGTACATGCAGAAA
ATGAGCAAGTCAGGCACACAGGGTTTCTGCAGCTCATGTGACGCGTGCCT
GACACCCCACTCCAAGTTTGACTTCAACTTCGAGTGAGTCATAGGGCGGT
ATGTAAGCGTACTGCAGATGTTGCCTGCAGCCTTCAATGTATGTCCTCTG
TGAACAGCGTTACAGCACAGGCTGATCTGCTCGGAGGTGCGAGCAGGGTC
AGAGCTGTGGTTGGGTCAGGCCCCAAGCACTTGACATCTTGCAACTTACA
GCCATTCTACAGTGCAATAGCAGACAACCAGTCACATGCAGTGCGCGAAT
ACCGCTGTGCTGAGCCGATTAACTTCATGTCACCCGGCGCTATTTACACT
TGTGTGTGGCGCACAGGTGGAGGCGACTGCTGACCCACTCACGTATGTAC
GCGAAATCAGCGGCACATTTTTCGGGCAGCTCATGGACACTGTGGCAGCG
TTCCTCAAGCTGTTCTGCAGCAACAACATTGCTCAGCACGAGAGCCGAGC
CGCCAAGACCGGCAGGAGCCCAGCTTACATGCAGGTAATCATGGGCTCTT
AGGGTGAGGGATAGGCTTGTCATGAAGGCGTTGTGCCGAATTGTATGCAA
TCAATGGCTTAGATCTCATAACCTCTAACACAAAAGAGTCTTGGTCAATG
TCGCGAGTCAAGCTCATTGCTGTTGACCATTTGCAGCACATGGACAGGAT
GCCATCCACCAACATGTGTGCGTTGTTGTTTTTCCATCATGCACTGTACT
AGCATCTGCAGGGCTGAGCACTTCTCATGGAGGGAGCCTTACCATCCCCA
GCCCCCCCCCCCCCCCCCCCCCCCCGCCCGTATTACCCGCCGACTCACTC
ACTCATTCACTCGCTGACATGCTAATCTCTCTCTGCACCCACCCCACCCC
CCCGTCTGTCCCACCCGCCCCACCCACCCACCCACCCGCACAGGTGTACG
CGGGCATGAAGGCGTGCGGCTCCGCGCCGTTCTGCCGCCTCGTCATGTGG
CTCGACAACCAAGTCGACCAGTACGCGCGCCTCGTGGGCCGCCAGATCAC
CGCCGTGGGCCTCGGCGCGCACGCCGCGCGCGCCGCCGACGCCGCGCTTC
CCCGCACCGCCCCCCCCCCAAAATCCCCCCCCCCGGGGGACCCCGTCGAC
CCCGTCGCCGCGACGCTCTTCGCGACCGTCTCGCTCATGCTGGAGGACGC
CTTCGGCGCCGCGGCGCGGCTCAACAGGCACGGCTTCCCCGTGGGGGTCG
CGCTCGCGTCGCGCCTGCACGCGCACGCAGGCGCGTTCCTCGAGGCCTTC
GCGCGCCGCGCGCGCGACGCCGTGCTGGAGGCCGCCTCGCGCGACGCCCT
CGCCGTCCACGAGTACCGCTTCGCGCCGCCGGAGGCGCTGCTCGGCCCCG
CGGGCGGCCCGCAGTGGGCGGACCAGACGCTCGTCGTCTGGCTCAACTCC
AGCGCCGCTGCCGCGGTCTGCGAGGCGCGCTCCTTCCTCGAGTGCTGCCT
CATGCTGCTGGACCCGCCGCCGCTGCCGGCGGCGGACGTCGGCGGCGGCG
GCGGCGGCGGCGGCAGCGTGGCGGAGGCTGCCGCGGCGGCGGCGGTGCTC
GGCGGCAGCTACTACTCGCGCGCGCACTTTGCGGACCTGCAGCCGCAGGT
GCTCAAGCTGGTGGCGTCGATCGCGAGCGCGGGCGCATCGGCGACGCTCG
CGGCGACGCTGCGGCGCGATGACGAGGGGCTGTTGCGGCAGTCGGAGGCG
CGCGCGGCGTGCGAGGCGGCCATCGTCTACGGCAAGCGCGTCGCGCCGCT
GCTGGCGCTGTGGTGCGGCGGCGTGTTCCCGGAGGTG
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Coding sequence (CDS) from alignment at Contig_138:361830..365116-

>mRNA_14000 ID=mRNA_14000|Name=jgi.p|Trimin1|176580|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1830bp|location=Sequence derived from alignment at Contig_138:361830..365116- (Tribonema minus UTEX_B_3156 )
ATGGATCTGATAGAGTTTTTTGGCGATGAGAACTTCGATGCGGGTGAGTA
TGTCAAGAAGTTCTATGAGAACAACTCCGCCAGCGGAGCTTCCGCCCGAT
GCGAGGAGCTGGAGTCACTGCGGAGGCAAACAGAGGAGAGCCTCAGGCAA
GAGGTCGTGCGCAACTACCAGACCTTCATGCACGCGACGGCGCAGATCCA
GTCCATGGAGAAGGACATCGACGCGCTGCGCAACCTCCTCTCCACCGCCG
CGACAACGCTCAGCACCTTCCAGTCCATCCGCCTCGTCGAGCGCCCCGAC
CCCGCCTCCAAGCTCTCCCCCACCAACGCCGAGGGGGGGGCGTTCGGGCT
GCGAGCAGGCGCTACCGGCCGCGGCGGCGACGGCGGCGGCGGCGCGGGGC
GCGGCGGCCTGAAGCTGCCCGAGTGGCTGGATAAGGCGCCGACAGAGCTA
GAGGAGCTGCTGCTGGAGCGAAAGCACGAGGCGGCGGTGCGGCTCATACG
GCAGGTCAAGGCGTTCGCGGCGAATGTGCGCAACGCGACGAACCTCGGCG
CGGGCGTCGCGGACATCTTCGCGCAGGCGGACGCCATGGCCGCGGAGCTC
TCGTGCCGCCTCATCACGGAGATCACGGGGACGAACACGTTCACCGCGTG
GGGCTTCCGCGAGCACAAGAAGAACTTTGAGCTGCTCATCGACCTCGGCT
ACGCAGACGCCGCGGCGGCGGCGCTCGTGAAGGAGCGCAGCGCGCTGATC
CGGCGCTCGCTGCACATGGTGGAGGCGACTGCTGACCCACTCACGTATGT
ACGCGAAATCAGCGGCACATTTTTCGGGCAGCTCATGGACACTGTGGCAG
CGTTCCTCAAGCTGTTCTGCAGCAACAACATTGCTCAGCACGAGAGCCGA
GCCGCCAAGACCGGCAGGAGCCCAGCTTACATGCAGGTGTACGCGGGCAT
GAAGGCGTGCGGCTCCGCGCCGTTCTGCCGCCTCGTCATGTGGCTCGACA
ACCAAGTCGACCAGTACGCGCGCCTCGTGGGCCGCCAGATCACCGCCGTG
GGCCTCGGCGCGCACGCCGCGCGCGCCGCCGACGCCGCGCTTCCCCGCAC
CGCCCCCCCCCCAAAATCCCCCCCCCCGGGGGACCCCGTCGACCCCGTCG
CCGCGACGCTCTTCGCGACCGTCTCGCTCATGCTGGAGGACGCCTTCGGC
GCCGCGGCGCGGCTCAACAGGCACGGCTTCCCCGTGGGGGTCGCGCTCGC
GTCGCGCCTGCACGCGCACGCAGGCGCGTTCCTCGAGGCCTTCGCGCGCC
GCGCGCGCGACGCCGTGCTGGAGGCCGCCTCGCGCGACGCCCTCGCCGTC
CACGAGTACCGCTTCGCGCCGCCGGAGGCGCTGCTCGGCCCCGCGGGCGG
CCCGCAGTGGGCGGACCAGACGCTCGTCGTCTGGCTCAACTCCAGCGCCG
CTGCCGCGGTCTGCGAGGCGCGCTCCTTCCTCGAGTGCTGCCTCATGCTG
CTGGACCCGCCGCCGCTGCCGGCGGCGGACGTCGGCGGCGGCGGCGGCGG
CGGCGGCAGCGTGGCGGAGGCTGCCGCGGCGGCGGCGGTGCTCGGCGGCA
GCTACTACTCGCGCGCGCACTTTGCGGACCTGCAGCCGCAGGTGCTCAAG
CTGGTGGCGTCGATCGCGAGCGCGGGCGCATCGGCGACGCTCGCGGCGAC
GCTGCGGCGCGATGACGAGGGGCTGTTGCGGCAGTCGGAGGCGCGCGCGG
CGTGCGAGGCGGCCATCGTCTACGGCAAGCGCGTCGCGCCGCTGCTGGCG
CTGTGGTGCGGCGGCGTGTTCCCGGAGGTG
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