mRNA_13992 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A835ZCW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW3_9STRA) HSP 1 Score: 286 bits (732), Expect = 8.400e-98 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS Sbjct: 1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 144
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI) HSP 1 Score: 149 bits (376), Expect = 6.500e-39 Identity = 82/216 (37.96%), Postives = 106/216 (49.07%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXE-DGGD------------------------------------------------------------------------ECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429 YT+++HPPLVVENLLP+ G+FEL D+ + LW A+L+ G S+GVY+ G+D PL + +NLGFCR + V +HDG RG GGD E S + LTD+VGQR+ + +ENR G GGQR+VTVY P WMVNTSHYR+R+RQDG Sbjct: 4742 YTMMLHPPLVVENLLPYAGSFELVDQSKTVLWRAQLDSGASIGVYTAGLDTPLKMFINLGFCRTHEAVLIHDGRRGARGSLGGFNLAGGDGLNSINTRFSTNGHTRPKSGSGSGSGNIGDWISAAGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAAELGSSVALTDSVGQRVEVYLENRLGDGGQRNVTVYCPVWMVNTSHYRLRYRQDG 4957
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS) HSP 1 Score: 116 bits (290), Expect = 2.460e-27 Identity = 72/218 (33.03%), Postives = 99/218 (45.41%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG---------------------------------------------LRGGXXXXXXXED----------------------------GGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQD 426 YT+V+HPP+V+ENLLP G FEL D RN LW LE G V VY+VG+D PL+LLLNLGFCR +G +H G L+GG G ++ AS + D++GQR+ L ++N GGGGQR V++Y PYW+VNT+ + +++RQ+ Sbjct: 3144 YTLVIHPPIVIENLLPERGRFELMDATNRNVLWHGVLEAGQKVPVYTVGLDSPLMLLLNLGFCRTPVGEGALIHHGGGDGLFRAGWNTLGNAMKTSKEKVKRTLYTMTESKDIRGAGRLSILKGGMKKAASGSRKVGRLGFDTENEAIEESARGGMWRGDGFGAEDVASETNVVDSLGQRLTLLIDNVIGGGGQRRVSLYCPYWIVNTTEHSLKYRQE 3361
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: K0SGL5_THAOC (PDZ domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL5_THAOC) HSP 1 Score: 110 bits (274), Expect = 3.450e-25 Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADEG-RNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM-DGVHVHDG---------------------------------------------LRGGXXXXXXXE--------------------------DGG---DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQD 426 YT+V+HPP+V+ENLLP G FEL D RN LW A LEPG V V++VG+D PLLLL+N +C+ + DG VH G L+ G E DGG ++ AS +T+ D+ GQ++ L ++N G GGQR V+VY P+W+VNT+ + ++++Q+ Sbjct: 2093 YTLVIHPPIVIENLLPERGRFELMDGNTRNVLWWAILEPGEIVPVHTVGLDSPLLLLVNFVYCKTIGDGALVHRGEAEGILRAGWNTIGTAVKTSRDRVKKTLNTITDTKDNRGVTKFNMLQAGGKTPAKGEQLGFSSENDSIIESTGLSTSARRISGDGGFGSEDVASELTVVDSQGQKLTLLLDNESGRGGQRRVSVYCPFWIVNTTEHSLKYKQE 2310
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A7R9UEG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.340e-22 Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADEGRNPL-WAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVH-VHDGLRGGXXXXXXX---EDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429 Y ++VHPP+V+ENLLP F+L + + W+ L G V V++VG++ PL LL+ L F ++ +H G + + A I L D GQ++ L +EN GGGGQR V VY PYWMVNT+ +R+ ++G Sbjct: 1281 YRLIVHPPIVLENLLPRPAVFKLMHGIQERIVWSGTLRAGERVPVHTVGLEAPLRLLMKLDFAESVAPYALIHTGAESSTQTGFGLLLSQIINESVAKQIVLRDIQGQKLHLAIENTLGGGGQRQVVVYCPYWMVNTTGMDIRYHEEG 1428
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A1Z5JFP8_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFP8_FISSO) HSP 1 Score: 100 bits (250), Expect = 5.900e-22 Identity = 68/224 (30.36%), Postives = 97/224 (43.30%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG------LR------------------------------------------------------------GGXXXXXXXEDGG-----------DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432 Y++ +HPP VV NLLP G FEL + LW +EPG V V+S+G+D PL+L +NLGFCR +G VH G LR G DG ++ A G T+ D++GQ++ L++EN RGGGGQR ++VY P+W+VNT+ +R++Q+ S Sbjct: 2619 YSLSIHPPFVVVNLLPKIGRFELMHAVHKKVLWFKDVEPGEEVSVHSLGLDSPLMLYINLGFCRTPVGEGALVHHGADHNARLRENLVGLKSIGKAGKAVTKQIGKTLTSIGDSPDKRAQNKIFKAQNPHLKERTSSKQKRVRIGNTNDSQGAADGKTYRVDSSSYSPEDVADGATVVDSLGQKLRLQIENIRGGGGQRRISVYCPFWVVNTTELPLRYKQENS 2842
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.960e-22 Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELAD-EGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429 Y +V+HPPLV+ENLLP F L D + LW A L+ G S+ ++ V +D +LL + CR+ + V +H G GG D + A IT+ DA Q++ L++E++ GG GQR +Y PYW+VN ++ + + Q+G Sbjct: 2982 YMIVIHPPLVLENLLPEACVFRLYDFTSKAMLWKAHLQAGQSMPIHDVRVDCSVLLDVQTEDCRSTESVLIHKG--GGALRGMEAID--HDVAKFITMMDAENQKLLLQLEHQVGGAGQRRTILYCPYWLVNNTNCLLTYIQEG 3121
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A1Z5KNZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNZ8_FISSO) HSP 1 Score: 100 bits (248), Expect = 1.110e-21 Identity = 67/224 (29.91%), Postives = 97/224 (43.30%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG------LR------------------------------------------------------------GGXXXXXXXEDGG-----------DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432 Y++ +HPP VV NLLP +G FEL + LW +EPG V V+S+G+D PL+L +NLGFCR +G VH G LR G DG + A +T+ D++GQ++ L++EN RGGGGQR ++VY P+W+VNT+ +R++Q+ S Sbjct: 2622 YSLSIHPPFVVINLLPKKGRFELVHAVHKKVLWVKDVEPGEEVAVHSLGLDSPLVLYINLGFCRTPVGEGALVHHGADHNARLRENLIGLKSIGKAGKAVTKQIGKTLTAIGDSPDKRAQNKISRAQNPHLLQRKSPQQKQVRIGNTNDSQGAADGKTYRVDSSSYSPQDVADVVTVVDSLGQKLRLQIENIRGGGGQRRISVYCPFWVVNTTELPLRYKQENS 2845
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A7S2Y632_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y632_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.170e-21 Identity = 70/229 (30.57%), Postives = 93/229 (40.61%), Query Frame = 1 Query: 1 YTVVVHPPLVVENLLPHEGTFELADEGRNP-LWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDGL---------------------------------------RGGXXXXXXXED----------------------GGDE---------------------CASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432 YT+ V+ P VV NLLP G FEL R LW A LEPG V V+SVG+D PLLLL+NL FCR +G VH G+ + G ++ GD C + D VGQR+ L +EN RGGGGQR ++VY P+W++NT+ + + +RQ+ S Sbjct: 953 YTLSVYAPFVVANLLPEPGRFELMHAVRKTVLWFADLEPGQQVSVHSVGLDAPLLLLINLRFCRTPIGEGALVHHGVDPPPEAREHLGRLRSIGKAGKAVTMQLGKTLTALGESPDKRGHDRLYLAQNKENQPIHDKKGHHNTKRVAKVSAGDSATEDVDGKTYRVDTTIFFPENCVDETVVVDGVGQRLTLGIENIRGGGGQRRISVYCPFWIINTTEHALAYRQERS 1181
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A482SP39_9ARCH (SHR-BD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP39_9ARCH) HSP 1 Score: 89.0 bits (219), Expect = 3.600e-20 Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 157 LLLLLNLGFCRNMDGVHVH-DGLRGGXXXXXXX----------EDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429 +LL++NL +CR +GV +H L G +D G++ I LTD VGQ++ L VEN +GGGGQRHV VY PYW+VNTS Y R R++G Sbjct: 1 MLLIINLRYCRASEGVLIHRPNLAGNPPLSLVNRLQKAIEGILDDSGEDDVYSIVLTDTVGQKLRLNVENTQGGGGQRHVVVYCPYWVVNTSQYAFRVREEG 102 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TACACGGTCGTCGTGCACCCGCCGCTGGTCGTGGAGAACCTGCTGCCGCAback to top protein sequence of jgi.p|Trimin1|128835 >Trimin1|128835|gw1.138.1.1 ID=Trimin1|128835|gw1.138.1.1|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDback to top mRNA from alignment at Contig_138:306219..306650+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_138:306219..306650+ >mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )back to top |