mRNA_13782 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137917
Unique NamemRNA_13782
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A835ZB50_9STRA (CCT motif-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB50_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.720e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL
Sbjct:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 65
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A836CR31_9STRA (CCT motif-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR31_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.110e-33
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    4 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            +VGAYSPESRRRR++RF+EKR HR+WTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVM L
Sbjct:    1 MVGAYSPESRRRRVQRFMEKRHHRIWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMAL 64
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BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A7S1D0Z6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0Z6_CYCTE)

HSP 1 Score: 106 bits (265), Expect = 3.470e-27
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            G VGAYSPESR+ R+ERF+EKR HRVWTK+VKYDVRKNFAD+R+RVKGRFVKK+DE L+RE+M+L
Sbjct:  159 GWVGAYSPESRKLRIERFMEKRNHRVWTKSVKYDVRKNFADSRLRVKGRFVKKEDELLMRELMSL 223
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A7S2WW68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW68_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.350e-26
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    4 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
             +GAYSPE+RR+R++RFLEKRK RVWTK VKYDVRKNFAD+RMRVKGRFVKK+DE LLRE+M++
Sbjct:  197 FIGAYSPEARRKRIQRFLEKRKKRVWTKKVKYDVRKNFADSRMRVKGRFVKKEDEELLRELMSI 260
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A6H5L5R7_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5R7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.040e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    4 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVM 189
             VGAYSPE+RR+R+ERFLEKR+ RVWTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVM
Sbjct:  614 FVGAYSPEARRQRIERFLEKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM 675
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A7S2Y5T4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5T4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.370e-25
Identity = 50/65 (76.92%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            G VGAYSPESR+ RLERF+EKRKHRVW +TVKYDVRKNFA++R+RVKGRFVKK+DE ++RE+M+L
Sbjct:  220 GWVGAYSPESRKVRLERFMEKRKHRVWQQTVKYDVRKNFANSRLRVKGRFVKKEDELIMRELMSL 284
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A448Z5G1_9STRA (CCT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5G1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.660e-25
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            G +GAYSPESR+ R+ RFLEKR HRVWTKTVKYDVRKNFAD+R+RVKGRFVKKDDE L+RE+M+L
Sbjct:  586 GWIGAYSPESRKVRIGRFLEKRNHRVWTKTVKYDVRKNFADSRLRVKGRFVKKDDELLMRELMSL 650
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A7R9ZQH8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQH8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.760e-25
Identity = 49/63 (77.78%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    7 VGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            VGAYSP+SR+ R++RFLEKR HRVWTKTVKYDVRKNFAD+R+RVKGRFVKK+DE ++RE+M+L
Sbjct:  217 VGAYSPQSRKVRIQRFLEKRNHRVWTKTVKYDVRKNFADSRLRVKGRFVKKEDELMMRELMSL 279
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: D8LRP7_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.330e-25
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    4 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVM 189
             VGAYSPE+RR+R+ERFL+KR+ RVWTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVM
Sbjct:  651 FVGAYSPEARRQRIERFLDKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM 712
[Close]
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Match: A0A7S2P995_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P995_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.890e-25
Identity = 46/65 (70.77%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMTL 195
            G +GAYSPE+R++R+ +FL+KRKHRVWTK VKYDVRKNFAD+R+RVKGRFVKK+DE L+R++++L
Sbjct:  154 GYIGAYSPEARKQRITKFLQKRKHRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDELLMRDLISL 218
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137917 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB50_9STRA2.720e-37100.00CCT motif-domain-containing protein (Fragment) n=1... [more]
A0A836CR31_9STRA5.110e-3389.06CCT motif-domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1D0Z6_CYCTE3.470e-2778.46Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2WW68_9STRA4.350e-2678.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5L5R7_9PHAE9.040e-2687.10CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y5T4_9STRA1.370e-2576.92Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448Z5G1_9STRA1.660e-2580.00CCT domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7R9ZQH8_9STRA1.760e-2577.78Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
D8LRP7_ECTSI2.330e-2585.48CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2P995_9STRA3.890e-2570.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:26059..26253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137917|gw1.137.41.1
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009791,GO:0009889,GO:0009908,GO:0009909,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048367,GO:0048580,GO:0048608,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0090567,GO:0104004,GO:0140110,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2001141
DescriptionCCT motif
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CXHC@1|root,2RXHA@2759|Eukaryota
Evalue3.82e-26
Seed ortholog2880.D8LRP7
Hectar predicted targeting categoryother localisation
TranscriptId138239
TrackFilteredModels1
ProteinId137917
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137917gene_13782Tribonema minus UTEX_B_3156 geneContig_137 26059..26253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13782_1exon_13782_1Tribonema minus UTEX_B_3156 exonContig_137 26059..26253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13782CDS_13782Tribonema minus UTEX_B_3156 CDSContig_137 26059..26253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137917Trimin1|137917|gw1.137.41.1Tribonema minus UTEX_B_3156 polypeptideContig_137 26059..26253 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13782 ID=mRNA_13782|Name=jgi.p|Trimin1|137917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_137:26059..26253- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTCTCGTGGGCGCGTACTCGCCGGAGAGCCGGCGGCGGCGCCTCGAGCG
GTTCCTCGAGAAGCGCAAGCACCGCGTGTGGACCAAGACGGTCAAGTACG
ACGTGCGCAAGAACTTTGCCGACACGCGCATGCGCGTCAAGGGGCGCTTT
GTGAAGAAGGACGACGAGGCGCTGCTGCGCGAGGTCATGACGCTG
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protein sequence of jgi.p|Trimin1|137917

>Trimin1|137917|gw1.137.41.1 ID=Trimin1|137917|gw1.137.41.1|Name=jgi.p|Trimin1|137917|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
GLVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRF
VKKDDEALLREVMTL
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mRNA from alignment at Contig_137:26059..26253-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13782 ID=mRNA_13782|Name=jgi.p|Trimin1|137917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_137:26059..26253- (Tribonema minus UTEX_B_3156 )
GGTCTCGTGGGCGCGTACTCGCCGGAGAGCCGGCGGCGGCGCCTCGAGCG
GTTCCTCGAGAAGCGCAAGCACCGCGTGTGGACCAAGACGGTCAAGTACG
ACGTGCGCAAGAACTTTGCCGACACGCGCATGCGCGTCAAGGGGCGCTTT
GTGAAGAAGGACGACGAGGCGCTGCTGCGCGAGGTCATGACGCTG
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Coding sequence (CDS) from alignment at Contig_137:26059..26253-

>mRNA_13782 ID=mRNA_13782|Name=jgi.p|Trimin1|137917|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_137:26059..26253- (Tribonema minus UTEX_B_3156 )
GGTCTCGTGGGCGCGTACTCGCCGGAGAGCCGGCGGCGGCGCCTCGAGCG
GTTCCTCGAGAAGCGCAAGCACCGCGTGTGGACCAAGACGGTCAAGTACG
ACGTGCGCAAGAACTTTGCCGACACGCGCATGCGCGTCAAGGGGCGCTTT
GTGAAGAAGGACGACGAGGCGCTGCTGCGCGAGGTCATGACGCTG
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