mRNA_14066 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A835ZBP3_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP3_9STRA) HSP 1 Score: 310 bits (795), Expect = 3.930e-107 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 Query: 1 MAAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGGPGTYLPTHVSRAETS 456 MAAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGGPGTYLPTHVSRAETS Sbjct: 1 MAAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGGPGTYLPTHVSRAETS 152
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: D8LKN6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN6_ECTSI) HSP 1 Score: 178 bits (452), Expect = 9.990e-54 Identity = 86/132 (65.15%), Postives = 104/132 (78.79%), Query Frame = 1 Query: 19 APIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGGP 414 AP+KWAQR DS+Y+T+ LPDVKDE+L+LT+D L F+GTS Y +DLEFLH V ++STWKVLP SIQMHI+K +D FW RL KDK+LEK + IDWNK+VDEDE++ GFDMSAL GGS FGG GGP Sbjct: 6 APVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFSGTSNDKKYALDLEFLHDVNSEKSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 137
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A7S2ET46_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ET46_TRICV) HSP 1 Score: 175 bits (443), Expect = 1.760e-52 Identity = 85/133 (63.91%), Postives = 104/133 (78.20%), Query Frame = 1 Query: 19 APIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKA------DKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFG 399 APIKWAQR DSLYVTIA+PD+KDE ++L+ DKLVF G S+G + VD+EF PV K ST+KVLP S+QM I+KA D+D +FW RL KDKALEKN + +DW++YVDEDEE++AGGFDMSAL GG G G Sbjct: 37 APIKWAQRSDSLYVTIAVPDIKDETIDLSNDKLVFKGKSEGKDWQVDIEFFKPVDAKGSTYKVLPRSVQMFIVKAQSDDDGDEDKEFWPRLLKDKALEKNQVKVDWDRYVDEDEEEEAGGFDMSALEGGMGMG 169
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A7S2KS89_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KS89_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.030e-50 Identity = 81/132 (61.36%), Postives = 100/132 (75.76%), Query Frame = 1 Query: 1 MAAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGF 396 MA APIKWAQR DSLY+TIALPDVKDE ++L + L FTGTS Y V +EF PV +EST+KVLP S+QMH++K D++ +FW RL KDKA EKN + IDW++YVDEDEE++ GGFDMSA+ GG G Sbjct: 26 MAQANTAPIKWAQRSDSLYITIALPDVKDENIQLEDGTLNFTGTSNSKPYTVAIEFFKPVSSEESTYKVLPRSVQMHVVKKDQEDEFWPRLLKDKAKEKNQVKIDWDRYVDEDEEEEEGGFDMSAMEGGMGM 157
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A7S1DAL4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAL4_CYCTE) HSP 1 Score: 168 bits (426), Expect = 5.510e-50 Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = 1 Query: 10 PLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADK--DADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGG 402 P APIKWAQR DSLY+TIAL DV+DE + LT+ +L F G S+ Y V +EF V + ST+KVLP S+QMH++K DK D++FW RL KDKALEKN + IDW++YVDEDEE+DAGGFDMSAL GG G GG Sbjct: 30 PNTAPIKWAQRSDSLYLTIALSDVRDETINLTDKELKFKGKSESKEYEVSIEFFEEVDAEGSTYKVLPRSVQMHVMKRDKSDDSEFWPRLLKDKALEKNQVKIDWDRYVDEDEEEDAGGFDMSALQGGMGMGG 162
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A7S0AJF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJF6_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.640e-49 Identity = 84/132 (63.64%), Postives = 99/132 (75.00%), Query Frame = 1 Query: 19 APIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKA----DKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGG 402 APIKWAQR DSLYVTIAL DVKDE + L++ L F G S Y V++EF V K+ST+KVLP SIQMH++KA D+D +FW RL KDKALEKN + IDW++YVDEDEED+AGGFD SAL GG G GG Sbjct: 8 APIKWAQRSDSLYVTIALQDVKDETINLSDTTLSFKGKSGDKDYEVNIEFFKAVDAKDSTYKVLPRSIQMHVMKATSKDDEDEEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDEAGGFDTSALEGGMGMGG 139
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A1W0A159_9STRA (CS domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A159_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.410e-48 Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 1 Query: 4 AAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPV--VPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGF 396 ++ L AP+KWAQR DSLYVT+ LPDVKDEK+ LT L FTGTS Y V LEFLH V KES W P ++ +I+K DK+A FW L KDKALEK + +DWNKYVDEDE +D GFDMSAL+GG GF Sbjct: 5 SSTLWAPVKWAQRADSLYVTVDLPDVKDEKVVLTNSSLKFTGTSNQQKYEVTLEFLHEVDTAAKESKWAATPRNVHFYILKKDKEAPFWPHLLKDKALEKTNVKVDWNKYVDEDEAEDDQGFDMSALSGGGGF 137
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: A0A7S0C9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D9_9STRA) HSP 1 Score: 162 bits (409), Expect = 2.530e-48 Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = 1 Query: 19 APIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGG 402 AP+KWAQR DSLY+TIALPDVK+E + L++D+L F G S G +Y +++ F ++S++KVLP SIQM+++K + D +FWTRL KDKALEKN + IDW++YVDEDEED+AGGFD S L GG G GG Sbjct: 9 APMKWAQRSDSLYLTIALPDVKEETINLSDDELHFKGISGGKSYELNITFFKKTKSEDSSYKVLPRSIQMNVMKDNADEEFWTRLLKDKALEKNRVKIDWDRYVDEDEEDEAGGFDTSNLDGGQGMGG 136
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: B7FPF4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPF4_PHATC) HSP 1 Score: 159 bits (402), Expect = 1.560e-46 Identity = 81/129 (62.79%), Postives = 98/129 (75.97%), Query Frame = 1 Query: 19 APIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVVPKESTWKVLPASIQMHIIKADKDAD-FWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGG 402 APIKWAQR DSLY+TIALPDVKDE + L + L F GTS +Y V++EF V K+ST+KVLP SIQMH++K ++D + FW RL KDKALEKN + IDW++YVDEDEED+ GFD SAL GG G GG Sbjct: 10 APIKWAQRSDSLYLTIALPDVKDETINLEDQTLKFKGTSGDKSYEVNIEFFKKVDAKDSTYKVLPRSIQMHVMKHEEDREEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDE--GFDTSALEGGMGMGG 136
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Match: K3XC04_GLOUD (CS domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC04_GLOUD) HSP 1 Score: 157 bits (398), Expect = 1.610e-46 Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 1 Query: 16 LAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYHVDLEFLHPVV--PKESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGF 396 +AP+KWAQRKD++YVT+ LPDVKDEK++LT L F+GTS G Y V L+F V KES W ++ HI+K D DA+FW RL DK LEK +++DW+KYVDEDEE++ GGFDMSAL GG GF Sbjct: 4 VAPVKWAQRKDAIYVTVDLPDVKDEKVKLTNTNLTFSGTSNGEKYEVTLDFFKEVDVDAKESIWAKADRNVHFHIVKKDADAEFWPRLLSDKHLEKTNVTVDWSKYVDEDEEEEQGGFDMSALNGGGGF 132 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176136 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14066 ID=mRNA_14066|Name=jgi.p|Trimin1|176136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_133:390660..392986- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGGCACCTCTGCTGGCACCAATCAAGTGGGCTCAAAGAAAAGACTCback to top protein sequence of jgi.p|Trimin1|176136 >Trimin1|176136|e_gw1.133.70.1 ID=Trimin1|176136|e_gw1.133.70.1|Name=jgi.p|Trimin1|176136|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp MAAPLLAPIKWAQRKDSLYVTIALPDVKDEKLELTEDKLVFTGTSQGSAYback to top mRNA from alignment at Contig_133:390660..392986- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14066 ID=mRNA_14066|Name=jgi.p|Trimin1|176136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2327bp|location=Sequence derived from alignment at Contig_133:390660..392986- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_133:390660..392986- >mRNA_14066 ID=mRNA_14066|Name=jgi.p|Trimin1|176136|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_133:390660..392986- (Tribonema minus UTEX_B_3156 )back to top |