mRNA_1129 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156703
Unique NamemRNA_1129
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156703 vs. uniprot
Match: A0A836CPS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS8_9STRA)

HSP 1 Score: 357 bits (916), Expect = 7.910e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MVQELHASLKLNALNFLPYSTHNLHNGKNVYPFPRTFQFAYWIKALTTAWFESFMGKGVMPEQVFVSGTVDQAGNVKKALAICNVPVLECAAHRLNTCVQWAVGLAGTTDNAVTIKNPAMRTLIGKVGSIVSHFNFSTVANDAFKDTQDLITNEMFSDEGCPPDAVNLIDRNDTR 525
            MVQELHASLKLNALNFLPYSTHNLHNGKNVYPFPRTFQFAYWIKALTTAWFESFMGKGVMPEQVFVSGTVDQAGNVKKALAICNVPVLECAAHRLNTCVQWAVGLAGTTDNAVTIKNPAMRTLIGKVGSIVSHFNFSTVANDAFKDTQDLITNEMFSDEGCPPDAVNLIDRNDTR
Sbjct:    1 MVQELHASLKLNALNFLPYSTHNLHNGKNVYPFPRTFQFAYWIKALTTAWFESFMGKGVMPEQVFVSGTVDQAGNVKKALAICNVPVLECAAHRLNTCVQWAVGLAGTTDNAVTIKNPAMRTLIGKVGSIVSHFNFSTVANDAFKDTQDLITNEMFSDEGCPPDAVNLIDRNDTR 175
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156703 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CPS8_9STRA7.910e-125100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1477873..1478400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156703|e_gw1.1.341.1
Hectar predicted targeting categoryother localisation
TranscriptId157025
TrackFilteredModels1
ProteinId156703
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156703gene_1129Tribonema minus UTEX_B_3156 geneContig_1 1477873..1478400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1129_1exon_1129_1Tribonema minus UTEX_B_3156 exonContig_1 1477873..1478400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1129CDS_1129Tribonema minus UTEX_B_3156 CDSContig_1 1477873..1478400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156703Trimin1|156703|e_gw1.1.341.1Tribonema minus UTEX_B_3156 polypeptideContig_1 1477873..1478400 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Trimin1|156703|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_1:1477873..1478400- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAAGAATTGCATGCATCTTTGAAACTGAATGCATTGAATTTTCT
ACCTTATAGCACTCACAACTTACACAATGGCAAAAATGTTTACCCGTTTC
CGCGCACGTTTCAATTTGCTTACTGGATCAAGGCACTGACCACGGCGTGG
TTTGAAAGCTTCATGGGCAAGGGGGTGATGCCGGAGCAGGTGTTTGTAAG
CGGCACAGTGGATCAAGCTGGAAACGTGAAAAAAGCACTCGCCATCTGCA
ACGTCCCAGTTCTTGAGTGTGCTGCCCATCGGCTGAACACTTGCGTGCAA
TGGGCAGTCGGTCTGGCGGGGACAACCGACAACGCTGTCACCATCAAGAA
CCCGGCCATGAGAACTCTCATTGGCAAAGTGGGCAGCATTGTCAGCCACT
TCAACTTTTCCACTGTGGCAAACGACGCCTTCAAAGACACACAGGATCTT
ATCACCAACGAAATGTTTAGTGATGAGGGATGCCCTCCCGACGCGGTCAA
TCTCATTGACCGCAATGACACAAGGTGA
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protein sequence of jgi.p|Trimin1|156703

>Trimin1|156703|e_gw1.1.341.1 ID=Trimin1|156703|e_gw1.1.341.1|Name=jgi.p|Trimin1|156703|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MVQELHASLKLNALNFLPYSTHNLHNGKNVYPFPRTFQFAYWIKALTTAW
FESFMGKGVMPEQVFVSGTVDQAGNVKKALAICNVPVLECAAHRLNTCVQ
WAVGLAGTTDNAVTIKNPAMRTLIGKVGSIVSHFNFSTVANDAFKDTQDL
ITNEMFSDEGCPPDAVNLIDRNDTR*
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mRNA from alignment at Contig_1:1477873..1478400-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Trimin1|156703|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_1:1477873..1478400- (Tribonema minus UTEX_B_3156 )
ATGGTTCAAGAATTGCATGCATCTTTGAAACTGAATGCATTGAATTTTCT
ACCTTATAGCACTCACAACTTACACAATGGCAAAAATGTTTACCCGTTTC
CGCGCACGTTTCAATTTGCTTACTGGATCAAGGCACTGACCACGGCGTGG
TTTGAAAGCTTCATGGGCAAGGGGGTGATGCCGGAGCAGGTGTTTGTAAG
CGGCACAGTGGATCAAGCTGGAAACGTGAAAAAAGCACTCGCCATCTGCA
ACGTCCCAGTTCTTGAGTGTGCTGCCCATCGGCTGAACACTTGCGTGCAA
TGGGCAGTCGGTCTGGCGGGGACAACCGACAACGCTGTCACCATCAAGAA
CCCGGCCATGAGAACTCTCATTGGCAAAGTGGGCAGCATTGTCAGCCACT
TCAACTTTTCCACTGTGGCAAACGACGCCTTCAAAGACACACAGGATCTT
ATCACCAACGAAATGTTTAGTGATGAGGGATGCCCTCCCGACGCGGTCAA
TCTCATTGACCGCAATGACACAAGGTGA
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Coding sequence (CDS) from alignment at Contig_1:1477873..1478400-

>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Trimin1|156703|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_1:1477873..1478400- (Tribonema minus UTEX_B_3156 )
ATGGTTCAAGAATTGCATGCATCTTTGAAACTGAATGCATTGAATTTTCT
ACCTTATAGCACTCACAACTTACACAATGGCAAAAATGTTTACCCGTTTC
CGCGCACGTTTCAATTTGCTTACTGGATCAAGGCACTGACCACGGCGTGG
TTTGAAAGCTTCATGGGCAAGGGGGTGATGCCGGAGCAGGTGTTTGTAAG
CGGCACAGTGGATCAAGCTGGAAACGTGAAAAAAGCACTCGCCATCTGCA
ACGTCCCAGTTCTTGAGTGTGCTGCCCATCGGCTGAACACTTGCGTGCAA
TGGGCAGTCGGTCTGGCGGGGACAACCGACAACGCTGTCACCATCAAGAA
CCCGGCCATGAGAACTCTCATTGGCAAAGTGGGCAGCATTGTCAGCCACT
TCAACTTTTCCACTGTGGCAAACGACGCCTTCAAAGACACACAGGATCTT
ATCACCAACGAAATGTTTAGTGATGAGGGATGCCCTCCCGACGCGGTCAA
TCTCATTGACCGCAATGACACAAGGTGA
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