Trimin1|16982|CE16981_744 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|16982
Unique Name	Trimin1\|16982\|CE16981_744
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	309

Homology

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BLAST of jgi.p|Trimin1|16982 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 300 bits (767), Expect = 6.130e-98
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0

Query:    1 MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA 308
            MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA
Sbjct:    1 MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA 308

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BLAST of jgi.p|Trimin1|16982 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.570e-14
Identity = 54/154 (35.06%), Postives = 68/154 (44.16%), Query Frame = 0

Query:    1 MASAFRVCRPLSFAVDVAAD-----------GAGAR---------------------DWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRL 122
            MA AF + RP SF +DV  D            AGA+                     +WF++ +R+RQ+R WADTRV KG ELAR GQH AAI  Y QALGMC  H D +                         ++P   NA +YL  T  R+
Sbjct:  210 MADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGEADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRM 363

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|16982 vs. uniprot

BLAST of jgi.p|Trimin1|16982 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CKS1_9STRA	6.130e-98	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FK49_ECTSI	4.570e-14	35.06	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 75..108 e-value: 5.4E-4 score: 29.3 coord: 41..74 e-value: 2.0 score: 17.4
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 45..70 e-value: 0.16 score: 12.3 coord: 79..108 e-value: 0.01 score: 16.0
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 75..108 score: 10.6794
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 28..129 e-value: 8.6E-17 score: 63.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 36..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..281
None	No IPR available	PROSITE	PS50293	TPR_REGION	coord: 75..106 score: 8.890031
IPR039190	Tetratricopeptide repeat protein 14	PANTHER	PTHR23184	TETRATRICOPEPTIDE REPEAT PROTEIN 14	coord: 30..278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_131	contig	Contig_131:373606..375673 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|16982	mRNA_13643	Tribonema minus UTEX_B_3156	mRNA	Contig_131 373547..375715 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|16982|CE16981_744 ID=Trimin1|16982|CE16981_744|Name=jgi.p|Trimin1|16982|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=309bp
MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAE
LARSGQHAAAIKYYDQALGMCAGHVDAVVARGAALASLGQLRQAVEAFQS
ALRLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRTPQPASASRS
TAAGSGAALPAAASTVVLPVSKEKLYVKPPPQAGGGDYSFVNSEDSEGGS
QGTGGGKREKRRDRRKHTKHEKKKKRKKEKHASSGGGSSKRSGDKKKHSS
RKPRRAAAASHLARQQRQQQRQQQRQLRRSPKTTILCSRIQYLGGPSTVC
GDFKCVVA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR039190	TTC14