Trimin1|352761|estExt_Genemark1.C_Ctg_1300025 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352761
Unique Name	Trimin1\|352761\|estExt_Genemark1.C_Ctg_1300025
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	609

Homology

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BLAST of jgi.p|Trimin1|352761 vs. uniprot
Match: A0A836CM27_9STRA (TIP-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM27_9STRA)

HSP 1 Score: 956 bits (2470), Expect = 0.000e+0
Identity = 608/608 (100.00%), Postives = 608/608 (100.00%), Query Frame = 0

Query:    1 MGVPASDARTLDAALRDNLEAILSDRALLAHAVEETIRFEHALEAEVRYGEMGALYPWLQWPRCIHVLSRHPLRFKLWLSVDQELARAVCYAVQSDDAAWAPAGGELSAXXXXXXXXXXXXXXXXTHAARRFALLFASVTQRYSLLAGPSQQHDQQLDFVNQIQRPLLESFASAIAARARACDLPRLYTLPEGDMIARWRSYCALVASAAFVRTMLSDAEDETLFVELSRAARAAQQRERASRHERFSPTRAASTAMSAASSVTQQVMEYASDPPTIIGPTRAVFAAVGTIRSAANTMRPLLRHAQRSPPPXXXXXXXXXXXADEDAATTAAETEVXXXXXXXXXXXTATTDAKRSGFVFESEAERYSAMTSALLADAIQKLAAPVLSALVRDLDQQSRADAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSQALLRQLAGCVAREIDNDVLQELAEGHRYITQAAGRRFAASVDVVRAVQHLLQPMVLCVPLHQRXXXXXXXXXXXXXXXVLERHCAQATGLGRLTECGALLALPKPQATSLHDALLTVDVRDETTHRQAVNMLESVSVFSLQPAEAVALLSKRQGGRPGAHAASGVTAL 608
            MGVPASDARTLDAALRDNLEAILSDRALLAHAVEETIRFEHALEAEVRYGEMGALYPWLQWPRCIHVLSRHPLRFKLWLSVDQELARAVCYAVQSDDAAWAPAGGELSAXXXXXXXXXXXXXXXXTHAARRFALLFASVTQRYSLLAGPSQQHDQQLDFVNQIQRPLLESFASAIAARARACDLPRLYTLPEGDMIARWRSYCALVASAAFVRTMLSDAEDETLFVELSRAARAAQQRERASRHERFSPTRAASTAMSAASSVTQQVMEYASDPPTIIGPTRAVFAAVGTIRSAANTMRPLLRHAQRSPPPXXXXXXXXXXXADEDAATTAAETEVXXXXXXXXXXXTATTDAKRSGFVFESEAERYSAMTSALLADAIQKLAAPVLSALVRDLDQQSRADAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSQALLRQLAGCVAREIDNDVLQELAEGHRYITQAAGRRFAASVDVVRAVQHLLQPMVLCVPLHQRXXXXXXXXXXXXXXXVLERHCAQATGLGRLTECGALLALPKPQATSLHDALLTVDVRDETTHRQAVNMLESVSVFSLQPAEAVALLSKRQGGRPGAHAASGVTAL
Sbjct:    1 MGVPASDARTLDAALRDNLEAILSDRALLAHAVEETIRFEHALEAEVRYGEMGALYPWLQWPRCIHVLSRHPLRFKLWLSVDQELARAVCYAVQSDDAAWAPAGGELSAXXXXXXXXXXXXXXXXTHAARRFALLFASVTQRYSLLAGPSQQHDQQLDFVNQIQRPLLESFASAIAARARACDLPRLYTLPEGDMIARWRSYCALVASAAFVRTMLSDAEDETLFVELSRAARAAQQRERASRHERFSPTRAASTAMSAASSVTQQVMEYASDPPTIIGPTRAVFAAVGTIRSAANTMRPLLRHAQRSPPPXXXXXXXXXXXADEDAATTAAETEVXXXXXXXXXXXTATTDAKRSGFVFESEAERYSAMTSALLADAIQKLAAPVLSALVRDLDQQSRADAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSQALLRQLAGCVAREIDNDVLQELAEGHRYITQAAGRRFAASVDVVRAVQHLLQPMVLCVPLHQRXXXXXXXXXXXXXXXVLERHCAQATGLGRLTECGALLALPKPQATSLHDALLTVDVRDETTHRQAVNMLESVSVFSLQPAEAVALLSKRQGGRPGAHAASGVTAL 608

[Close]

BLAST of jgi.p|Trimin1|352761 vs. uniprot
Match: A0A4D9D6Y1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Y1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.400e-8
Identity = 94/329 (28.57%), Postives = 142/329 (43.16%), Query Frame = 0

Query:    8 ARTLDAALRDNLEAIL-----SDRALLAHAVEETIRFEHALEAEVRY---------GEMGALYPWLQWPRCIHVLSRHPLRFKLWLSVDQ-----ELARAVCYAVQSDDAAWAPAGGELSAXXXXXXXXXXXXXXXXTHAARRFALLFASVTQRYSLLAGPSQQHDQQLDFVNQIQRPLLESFASAIAARARACDLPRLYTLPEGDMIARWRSYCALVASAAFVRTMLSDAEDETLFVELSRAARAAQQRE---------RASRHERFSPTRAASTAMSA-----------ASSVTQQVMEYASDPPTIIGPTRAVFAAVGTIRSAANT 297
            AR L  A R  + A+L      DRAL A   EE + F+ AL+ E  Y         G +G +     WPR   VL+    R + W  V+       L+R  C A  + DA  AP   E +A                T AA+ FA L +++T+RY    GP +  +     V +  + L+ ++   + A A+AC L R    P+ + + R   YC +V +A   R  + DA +E + + L      AQ+RE         RA        +  AST ++A           A+  T+ + +   D  TIIGPTR +  A+G+I+ A  T
Sbjct:  375 ARDLALAARRKMRAMLLGGSTEDRAL-ARLGEEALAFDKALDEETGYHRCASPAGVGVVGMVQR-QGWPRATDVLAASRQRLERWAEVEAAWVLGSLSRG-CEAPGAWDA--APGLEEQAAPP--------------TRAAQAFAGLVSTLTERY----GPLRHREALRVLVERTLKALVRAYLDYLYAAAKACRLSRAAFRPDFEDVLR--RYCLVVTAAHLGREAVEDAANEEIILRLE----GAQEREGEGGRDVGARAVAKATGVASALASTLLAAGQEGMGSAVRTATVTTETLTKAVEDSGTIIGPTRLLTRALGSIQRAVGT 674

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352761 vs. uniprot

BLAST of jgi.p|Trimin1|352761 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CM27_9STRA	0.000e+0	100.00	TIP-1 family-domain-containing protein n=1 Tax=Tri...	[more]
A0A4D9D6Y1_9STRA	6.400e-8	28.57	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007528	RINT-1/Tip20	PFAM	PF04437	RINT1_TIP1	coord: 17..271 e-value: 5.1E-20 score: 71.8
IPR007528	RINT-1/Tip20	PANTHER	PTHR13520	RAD50-INTERACTING PROTEIN 1 RINT-1	coord: 10..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..322
None	No IPR available	PANTHER	PTHR13520:SF0	RAD50-INTERACTING PROTEIN 1	coord: 10..592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_130	contig	Contig_130:211027..223815 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352761	mRNA_14387	Tribonema minus UTEX_B_3156	mRNA	Contig_130 211027..223822 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352761|estExt_Genemark1.C_Ctg_1300025 ID=Trimin1|352761|estExt_Genemark1.C_Ctg_1300025|Name=jgi.p|Trimin1|352761|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=609bp
MGVPASDARTLDAALRDNLEAILSDRALLAHAVEETIRFEHALEAEVRYG
EMGALYPWLQWPRCIHVLSRHPLRFKLWLSVDQELARAVCYAVQSDDAAW
APAGGELSAAAGGAAAAAAAASTAATHAARRFALLFASVTQRYSLLAGPS
QQHDQQLDFVNQIQRPLLESFASAIAARARACDLPRLYTLPEGDMIARWR
SYCALVASAAFVRTMLSDAEDETLFVELSRAARAAQQRERASRHERFSPT
RAASTAMSAASSVTQQVMEYASDPPTIIGPTRAVFAAVGTIRSAANTMRP
LLRHAQRSPPPPPLPPAPLPPLADEDAATTAAETEVTAQPEPPPPVATAT
TDAKRSGFVFESEAERYSAMTSALLADAIQKLAAPVLSALVRDLDQQSRA
DAAQQEEYAAAAAQPGAAAAAALLRLQLLLSAAAGGALSQALLRQLAGCV
AREIDNDVLQELAEGHRYITQAAGRRFAASVDVVRAVQHLLQPMVLCVPL
HQRAAGRRFAASVDVARAVLERHCAQATGLGRLTECGALLALPKPQATSL
HDALLTVDVRDETTHRQAVNMLESVSVFSLQPAEAVALLSKRQGGRPGAH
AASGVTAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007528	RINT1_Tip20