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Homology
BLAST of jgi.p|Trimin1|352753 vs. uniprot
Match: A0A836CKT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT3_9STRA) HSP 1 Score: 465 bits (1196), Expect = 6.500e-160 Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 1
Query: 1 MMPSILEVVATNCCDNSNPALGGALTRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHLPQQVAPAAPTAAPLPPLQYLEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGVQGGASEXXXXGAARDAQGRDATLEENRLRSQRXXXXXXXXXXXXXXXXXXXXXXXXRCARRLQKREAIDALPLLRAVAGTHLEVARQLRALEARLDDSLXXXXXXXXXXXXXXXXXXXXRLRAADAALALQEANYAALLDYELREAAHHCEAAVERAKDEAATAMAARARQLEGLRDGGPGSGXXXXXXXDFRPHTRFMRSRGXXXXXXXEEDGGGAFALIGGIGDRRGGAKRGGRCATPVCNFARALDEDDLLDDVEMMKAEADDAAAARQRKRGRA 1224
MMPSILEVVATNCCDNSNPALGGALTRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHLPQQVAPAAPTAAPLPPLQYLEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGVQGGASEXXXXGAARDAQGRDATLEENRLRSQRXXXXXXXXXXXXXXXXXXXXXXXXRCARRLQKREAIDALPLLRAVAGTHLEVARQLRALEARLDDSLXXXXXXXXXXXXXXXXXXXXRLRAADAALALQEANYAALLDYELREAAHHCEAAVERAKDEAATAMAARARQLEGLRDGGPGSGXXXXXXXDFRPHTRFMRSRGXXXXXXXEEDGGGAFALIGGIGDRRGGAKRGGRCATPVCNFARALDEDDLLDDVEMMKAEADDAAAARQRKRGRA
Sbjct: 1 MMPSILEVVATNCCDNSNPALGGALTRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHLPQQVAPAAPTAAPLPPLQYLEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGVQGGASEXXXXGAARDAQGRDATLEENRLRSQRXXXXXXXXXXXXXXXXXXXXXXXXRCARRLQKREAIDALPLLRAVAGTHLEVARQLRALEARLDDSLXXXXXXXXXXXXXXXXXXXXRLRAADAALALQEANYAALLDYELREAAHHCEAAVERAKDEAATAMAARARQLEGLRDGGPGSGXXXXXXXDFRPHTRFMRSRGXXXXXXXEEDGGGAFALIGGIGDRRGGAKRGGRCATPVCNFARALDEDDLLDDVEMMKAEADDAAAARQRKRGRA 408
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|352753|estExt_Genemark1.C_Ctg_1300013 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 353075 |
| Track | FilteredModels1 |
| ProteinId | 352753 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14373 ID=mRNA_14373|Name=jgi.p|Trimin1|352753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_130:96240..100269+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGATGCCGTCAATTCTGGAGGTGGTGGCCACCAACTGCTGCGACAACAG
CAACCCCGCTCTGGGCGGCGCGCTCACCCGCGCAGCAGCCGCAGCGAGAG
CAGAGGAAGCACGAGCAGCGGCAGCGGCAGCGGCGGCGGAGGCAGCGGCA
GGAGCAGCGGCGGCGGCGGCGGCAGCTGCAAATGCGCACCTTCCGCAGCA
GGTCGCGCCAGCAGCGCCCACCGCTGCGCCGCTGCCGCCGCTGCAGTACC
TGGAGCCGCCGCCCCCCACAACGACTGACGCTGCCGCCACGAGCAGCGTC
GGTCAGCCAGCATACGTGGCGGCCGCCATGGAGGTGGCGTCAGCGCCGCC
AGCTGCAGCAGCAGCAGCAGCGGCAGCAGCGCCGGGGGTTCAGGGGGGCG
CAAGCGAGGCGGCGGCAGCGGGTGCGGCGCGCGACGCGCAGGGGCGGGAC
GCGACGCTGGAGGAGAACCGGCTACGGTCGCAGCGCGCGGCGCAAGCGCG
CGTGCGGGAGCTGGAGGAGGAGCGCGCGGCGATAGCGCGTGCGGCCGTCG
CGCGCGCCCGCTGCGCGCGGCGGTTACAGAAGAGAGAGGCAATTGATGCG
CTACCGCTGCTGCGCGCTGTCGCGGGCACGCACCTGGAGGTCGCACGCCA
GCTGCGCGCGCTCGAGGCGCGCCTCGATGATTCCCTCGCCGGCACGCACC
CGGAGGTCGCGCGCCAGCTGCGCGCGCTCAAGGCGCGCCTCGCCGCGCGG
CTGCGCGCCGCCGACGCCGCGCTCGCGCTGCAGGAGGCCAACTACGCCGC
GCTCCTCGACTACGAGCTGCGCGAGGCTGCGCACCACTGCGAGGCGGCGG
TGGAGCGCGCCAAGGACGAGGCCGCGACGGCCATGGCGGCGCGCGCGCGC
CAGCTCGAGGGCTTGCGCGATGGCGGCCCAGGCAGCGGCGGCGGCGGCGG
CGGCGGCGGCGACTTCCGCCCGCACACGCGCTTCATGCGCTCCCGCGGCG
GCGGCGGCGGCGGGCGCTTTGAGGAGGACGGCGGCGGCGCGTTCGCGCTC
ATCGGGGGCATCGGCGACCGGCGCGGCGGCGCCAAGCGCGGCGGGCGCTG
CGCGACGCCCGTGTGCAACTTTGCGCGCGCGCTCGACGAGGACGACCTCC
TGGACGACGTCGAGATGATGAAGGCGGAGGCGGACGACGCGGCGGCGGCG
CGCCAGCGCAAGCGCGGCCGCGCGTGA back to topprotein sequence of jgi.p|Trimin1|352753 >Trimin1|352753|estExt_Genemark1.C_Ctg_1300013 ID=Trimin1|352753|estExt_Genemark1.C_Ctg_1300013|Name=jgi.p|Trimin1|352753|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=409bp
MMPSILEVVATNCCDNSNPALGGALTRAAAAARAEEARAAAAAAAAEAAA
GAAAAAAAAANAHLPQQVAPAAPTAAPLPPLQYLEPPPPTTTDAAATSSV
GQPAYVAAAMEVASAPPAAAAAAAAAAPGVQGGASEAAAAGAARDAQGRD
ATLEENRLRSQRAAQARVRELEEERAAIARAAVARARCARRLQKREAIDA
LPLLRAVAGTHLEVARQLRALEARLDDSLAGTHPEVARQLRALKARLAAR
LRAADAALALQEANYAALLDYELREAAHHCEAAVERAKDEAATAMAARAR
QLEGLRDGGPGSGGGGGGGGDFRPHTRFMRSRGGGGGGRFEEDGGGAFAL
IGGIGDRRGGAKRGGRCATPVCNFARALDEDDLLDDVEMMKAEADDAAAA
RQRKRGRA* back to topmRNA from alignment at Contig_130:96240..100269+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_14373 ID=mRNA_14373|Name=jgi.p|Trimin1|352753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4030bp|location=Sequence derived from alignment at Contig_130:96240..100269+ (Tribonema minus UTEX_B_3156 )
ATGATGCCGTCAATTCTGGAGGTGGTGGTGGCCGCAGTTTACATGTGGAC
GTCTGCAAGCGTCTGGAGGCGAGCGCTTGTGGTGCGGCAGAGCGTGTGCT
GCATGGCAGCATTGCAAAGTTGTCAACGAGTCCATGATTTTGTACTTGGA
GTGCAGCTGATGCCCCCCCGGGCGGAGCGTATTCGCACAGTTGGCCAACG
TAGCCGCTGGGCAGTTACACGGGAAGTGTTGCACTGATGAGGTGTCGGCA
AAGGGGCGGGGGATAACATGATCCTGGCAGGCGTCTACACAGGGATGACA
GTCATGTGTCCAGTAAAATACATCTTTTGTGCCGACAAACCGTCCGGTAT
TTTTGTAATGTTGTGTTGGCAAATCAAGTGGGCACATCGCGGCTGGTGCT
GCAGCCATTTAGTAAAAGCCGCAGCAGCGTCAGTCAGTAGCTGAAGCAAG
CCAGATGCTGCTGTAAGACTTGCATTACTTTCGTGAGAAATTGAGCTAAA
TTGTGTTTTGTGTAAGCATCAGGCAAGATGCTGATCCAGCCATTTTGGGC
AGACAGGGCCCTGCCTGAACGTACTGGGCGAAGCAGCCCCGCGGTCATCG
TCATTGCTTCAAGGAAGGGGAGTCATCATGTGTAAATCCACGCTTTGCAT
CTGTCATCGCATCGCCGCGTAAGTTCATTGCGCTCACCGCTTAACGGCCG
CAGGCCACCAACTGCTGCGACAACAGCAACCCCGCTCTGGGCGGCGCGCT
CACCCGCGGTCAACCAAAGTTGACACTCACACACGAAGTTCAAGTAGTGG
GAAAAAAACTTTCAAAAAAAGCGAACGTGAACTGAACTGAACTGCCTTAA
AAGCACACGCACTCGGCAGCGTCAGCTCTAACTGACCACTAGGCACTGGT
GCATGCGCCACGGCTGGCAGTGATCGCTGCCAGCCTGCACAGAGCCGTGC
GCGTCTCGGCCGGGAGCGACGCAAGCGAAACCCTCGGCAAACCCTTCTCG
CTCGAAGGTTGCAGCCTTCGCTGGAGCTGCACAGTCCGCTCTGCACTCCA
GGCCGTGCTGGAGTGCGTCTCAGTCACCAGCATGGAGACACCAGCATCTG
CTGCTCCTGGCCCCGGTAAGAACAGCATGTCAGCATTGAGGTTCTTCGCG
TTTCCGCGAAAGTTTGTATCCTGTGGCGTGTCGGCGTGCTCATGTGTCCG
ACACTGCCCCTGTCCACAGCATCTGCCAGCACATGTGCCTCGGCAATCAA
TGCTCATCCCGCTTTGGCTTCTCCTGCGTCCGTTGCAGGCTCATCACCGC
CAATGCAACTAGCCCGTGGAAATGGCGCAACTGTGCAGTCGCAGCTTGCC
AGTGGTGCTGCTGGTGCATTAGTGCCGCAGCCACCTGTACAAACGGTTAC
TGTCAACGGCTCCAAAGATGCAGCAAAGGAAGTCAGTGCAGCGCAGCAGT
CGCCGCCGCTTTTCCCACCCGAACGAGCTGCGGCGCCTGCGACTCCCGGC
ATTGCTGGAACCGGTGCAGCAGATGCGATGGTGTGTGATGTAGCAGATGA
TACAATCACATCACTCACAGAACGCCCTCATGGTCTGCTACGACCAACCA
GTGCTGTTGAACCAGCAGTTGCAGCGGTCAGCAAGGCGCAGCTTGGCACC
AACGGCGGCAGCGAAACCAGATCCGCTGCACCGCCTGCACCTGTTCCTTC
TACTGCACCTGTCCAAGGTTTCCCACCTCAAAATATACCTGAAGCGCGGC
CACATGGGGCTGCACTCTTTGTACAGACAACTGATGCTGCCGCAGCAGCA
GCCGCAGCGAGAGCAGAGGAAGCACGAGCAGCGGCAGCGGCAGCGGCGGC
GGAGGCAGCGGCAGGAGCAGCGGCGGCGGCGGCGGCAGCTGCAAATGCGC
ACCTTCCGCAGCAGGTCGCGCCAGCAGCGCCCACCGCTGCGCCGCTGCCG
CCGCTGCAGTACCTGGAGCCGCCGCCCCCCACAACGACTGACGCTGCCGC
CACGAGCAGCGTCGGTCAGCCAGCATACGTGGCGGCCGCCATGGAGGTGG
CGTCAGCGCCGCCAGCTGCAGCAGCAGCAGCAGCGGCAGCAGCGCCGGGG
GTTCAGGGGGGCGCAAGCGAGGCGGCGGCAGCGGGTGCGGCGCGCGACGC
GCAGGGGCGGGACGCGACGCTGGAGGAGAACCGGCTACGGTCGCAGCGCG
CGGCGCAAGCGCGCGTGCGGGAGCTGGAGGAGGAGCGCGCGGCGATAGGT
CAGTGCTCGGCGGAGCGCGCGATTCGCGGCATCAGAGCTTAGCACATTGT
GATTCAGCGGGCAGCGCATGAAAATTTGTTGAGACAGTGCTTAGCGCATT
CAAGTCAGCACTGATCGACTCGCTGCGCAGCGCGGCGCCGCAGCGCGTGC
GGCCGTCGCGCGCGCCCGCTGCGCGCGGCGGTTACAGAAGAGAGAGGCAA
TTGATGCGCTACCGCTGCTGCGCGCTGGTCGCTGCCCTCTCTGAGGTAGA
TGCCGTGAAGTGATGGGCGAGCACTGGGCACAGGCTCGCTGAGAGCGTCG
ACAATGCGCAGGCGCAGGCGCCGCGCGCAGGTCTCGCAGCACGTCTCAGC
GGATGCGGCGCACGCGCGCCTGAGTGTAGAGTGAATCGCGCAAATGATCG
CCAGTTGCGGTGTGCGCAGGCCGCGCATGGAGCGGCGCAGCCCCACTCCA
TTTTGCAGCAGCGCAGCGCCGCATCCCGCATTGGCACCTTCTTTCTCAGG
CGGCTCGGAGCGCTGCGCGCGTATGCTGAGCGCTGTGCATTCACGCAGCA
GCTGTGAGTGCTGCACACGCACACACGCATGCAGCAGCGGGGAACACGCC
CAATGGCATCTGGTTGATCGGCTGCAGTTCGGGTGATTTGGCCGGCGGCG
GGAGAAGCTTCGCGGTCTCAAGCGGCCAGCGCGGCGCAGCGACGACAGCG
CAAGGGACTTGGCGCGTCCGCAATAGCGTTGAGCACTGCTGTATTCTGCC
AACATTGCCATTGTTAAAGTTGTGGTGAAATGGGACGTTGAGTACGCTTT
GGCTCAGCAATCGCGAGCAGCACCCTCAATTTCCTCGAAATGCGCGACGC
TGCTGCAGGCGCTGACGCTATCTGCTTTTTACAGCATCAGGATGCGCTCC
GCATGCCAGACAGCGCGGTGGGGTATCTGTACGCCTTCTCACGGCCCATG
ATTCCCGTAATGCTGTTAGTAATGCTCCATCAAAGCCTGCGTTGACGCCC
GCACGACGGCCTCAGCGCTTCCCCCCCCCCCTCTCTCTCTCCCCCGCCCG
CGGCGCGCCCCGCAGTCGCGGGCACGCACCTGGAGGTCGCACGCCAGCTG
CGCGCGCTCGAGGCGCGCCTCGATGATTCCCGTAATGCTATTAGTAATGC
TCCTTCGAAGCCTGCGCTGACGCCCACACTCAACGGCATCCGCGCTTCCG
TCCCCCTCTCCCTCTCTCCCGCGGCGCGCGCCGCGCAGTCGCCGGCACGC
ACCCGGAGGTCGCGCGCCAGCTGCGCGCGCTCAAGGCGCGCCTCGCCGCG
CGGCTGCGCGCCGCCGACGCCGCGCTCGCGCTGCAGGAGGCCAACTACGC
CGCGCTCCTCGACTACGAGCTGCGCGAGGCTGCGCACCACTGCGAGGCGG
CGGTGGAGCGCGCCAAGGACGAGGCCGCGACGGCCATGGCGGCGCGCGCG
CGCCAGCTCGAGGGCTTGCGCGATGGCGGCCCAGGCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGACTTCCGCCCGCACACGCGCTTCATGCGCTCCCGCG
GCGGCGGCGGCGGCGGGCGCTTTGAGGAGGACGGCGGCGGCGCGTTCGCG
CTCATCGGGGGCATCGGCGACCGGCGCGGCGGCGCCAAGCGCGGCGGGCG
CTGCGCGACGCCCGTGTGCAACTTTGCGCGCGCGCTCGACGAGGACGACC
TCCTGGACGACGTCGAGATGATGAAGGCGGAGGCGGACGACGCGGCGGCG
GCGCGCCAGCGCAAGCGCGGCCGCGCGTGA back to topCoding sequence (CDS) from alignment at Contig_130:96240..100269+ >mRNA_14373 ID=mRNA_14373|Name=jgi.p|Trimin1|352753|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1227bp|location=Sequence derived from alignment at Contig_130:96240..100269+ (Tribonema minus UTEX_B_3156 )
ATGATGCCGTCAATTCTGGAGGTGGTGGCCACCAACTGCTGCGACAACAG
CAACCCCGCTCTGGGCGGCGCGCTCACCCGCGCAGCAGCCGCAGCGAGAG
CAGAGGAAGCACGAGCAGCGGCAGCGGCAGCGGCGGCGGAGGCAGCGGCA
GGAGCAGCGGCGGCGGCGGCGGCAGCTGCAAATGCGCACCTTCCGCAGCA
GGTCGCGCCAGCAGCGCCCACCGCTGCGCCGCTGCCGCCGCTGCAGTACC
TGGAGCCGCCGCCCCCCACAACGACTGACGCTGCCGCCACGAGCAGCGTC
GGTCAGCCAGCATACGTGGCGGCCGCCATGGAGGTGGCGTCAGCGCCGCC
AGCTGCAGCAGCAGCAGCAGCGGCAGCAGCGCCGGGGGTTCAGGGGGGCG
CAAGCGAGGCGGCGGCAGCGGGTGCGGCGCGCGACGCGCAGGGGCGGGAC
GCGACGCTGGAGGAGAACCGGCTACGGTCGCAGCGCGCGGCGCAAGCGCG
CGTGCGGGAGCTGGAGGAGGAGCGCGCGGCGATAGCGCGTGCGGCCGTCG
CGCGCGCCCGCTGCGCGCGGCGGTTACAGAAGAGAGAGGCAATTGATGCG
CTACCGCTGCTGCGCGCTGTCGCGGGCACGCACCTGGAGGTCGCACGCCA
GCTGCGCGCGCTCGAGGCGCGCCTCGATGATTCCCTCGCCGGCACGCACC
CGGAGGTCGCGCGCCAGCTGCGCGCGCTCAAGGCGCGCCTCGCCGCGCGG
CTGCGCGCCGCCGACGCCGCGCTCGCGCTGCAGGAGGCCAACTACGCCGC
GCTCCTCGACTACGAGCTGCGCGAGGCTGCGCACCACTGCGAGGCGGCGG
TGGAGCGCGCCAAGGACGAGGCCGCGACGGCCATGGCGGCGCGCGCGCGC
CAGCTCGAGGGCTTGCGCGATGGCGGCCCAGGCAGCGGCGGCGGCGGCGG
CGGCGGCGGCGACTTCCGCCCGCACACGCGCTTCATGCGCTCCCGCGGCG
GCGGCGGCGGCGGGCGCTTTGAGGAGGACGGCGGCGGCGCGTTCGCGCTC
ATCGGGGGCATCGGCGACCGGCGCGGCGGCGCCAAGCGCGGCGGGCGCTG
CGCGACGCCCGTGTGCAACTTTGCGCGCGCGCTCGACGAGGACGACCTCC
TGGACGACGTCGAGATGATGAAGGCGGAGGCGGACGACGCGGCGGCGGCG
CGCCAGCGCAAGCGCGGCCGCGCGTGA back to top
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