mRNA_14361 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175800
Unique NamemRNA_14361
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A835ZBX5_9STRA (IRK_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.900e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 291
            MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA
Sbjct:    1 MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 97
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: D8LEB6_ECTSI (IRK_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.390e-34
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 291
            ++A  WFA+EER+AI A+++DRELEVVVI+EG DTSTGSTVQ R+SY  ++++WD     CVT+  DG C VDF KFHD   AP +C D GF+QSYA
Sbjct:  214 LNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 310
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.590e-33
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 291
            ++A  WFA+EER+AI A+++DRELEVVVI+EG DTSTGSTVQ R+SY  ++++WD     CVT+  DG C VDF KFHD   AP +C D GF+QSYA
Sbjct:  678 LNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 774
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A7S1UC37_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC37_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.150e-17
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   31 ERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDS-GFVQSYA 291
            E+ A+  F++DRELE+VV+VEGID  T  T+Q R+SY  D + +D     CV + A+G CVVDF  FH +   PP C DS G + S+A
Sbjct:  138 EKEALREFLEDRELEIVVLVEGIDALTSCTLQARHSYRWDEIEFDKTFAECVFRSAEGNCVVDFTDFHRLVDCPP-CNDSFGPIPSHA 224
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A7S3HDT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDT6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-16
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   25 QEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKD-ADGKCVVDFLKFHDVRAAPPDCIDSGFVQS 285
            +EE+  +  +++DR++E++VIVEG+D +TG  VQ R+SY    ++WD +   CV KD  DG   +DF KFH +   P D   +G V S
Sbjct:  142 EEEQSMVQRYLRDRQVEIIVIVEGVDAATGGMVQARHSYTSSEIMWDKSFECCVEKDPVDGCTTIDFSKFHQLCDVPSDAPFAGVVHS 229
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A7S2JZ67_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ67_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.040e-16
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   19 FAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCV-------------TKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQS 285
            FAQ++   I  F+KDRE E+VV++EGID  TGST+QCR+SY  D++VW+H   PCV             T   DG C +D  +FH++   P +   S  + +
Sbjct:  391 FAQQQEE-ITKFIKDRESELVVLIEGIDEITGSTIQCRHSYRYDDIVWNHTFAPCVLPKQRKVQNNGSRTSVVDG-CTLDLSRFHELIPTPLNSESSPLIAN 490
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A482SDJ2_9ARCH (IRK_C domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDJ2_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 2.140e-15
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   28 EERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDAD-GKCVVDFLKFHDVRAAPPDCIDSGFVQS 285
            +E+  I  F+ DR++E++ IVEG+D++TG  VQ R SY  + + WD     C+ +D D G   +DF  FH +R  P D   SG + S
Sbjct:   16 DEKNMIQRFLSDRKIEIIAIVEGVDSATGGNVQARQSYTCEEIDWDKCFEYCMFEDPDDGVTTIDFDLFHKLRDVPKDAAYSGAIPS 102
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A485LG44_9STRA (Aste57867_20860 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LG44_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-15
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   43 IAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGK-CVVDFLKFHDVRAAPPDC 261
            I   +K  ELEV+VI+EG D++TG+T+Q R+SYA  ++ W+H    CV++  + K  ++DF KFHDVR AP DC
Sbjct:  331 IERHLKQSELEVLVILEGTDSTTGNTMQARFSYATYDIKWNHTFARCVSRHPETKGALIDFDKFHDVRPAPLDC 404
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: F0WGM8_9STRA (Animal inward rectifier K channel (IRKC) family protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WGM8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.610e-15
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   34 RRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPD 258
            R  I   +K  ELE+VVI+EGID ST +T+Q R+SY   ++ WD +  PCV +  DGK V+DF KFH +R  PP+
Sbjct:  309 RSQIEKHLKRSELEIVVILEGIDGSTSATMQARHSYIDSDIAWDSSFEPCVYRSNDGKIVIDFDKFHSIR--PPN 381
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BLAST of jgi.p|Trimin1|175800 vs. uniprot
Match: A0A6U9CWQ7_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U9CWQ7_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 2.820e-14
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   55 VKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDC 261
            ++D +LEV+ IVEGID ST  T Q RYSY  D++V+D     CV++ ADGKC +DF  FH++    P+C
Sbjct:  360 LRDGQLEVICIVEGIDPSTSMTCQARYSYTCDDVVFDADFQTCVSRAADGKCEIDFNAFHELVNRDPNC 428
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBX5_9STRA2.900e-67100.00IRK_C domain-containing protein n=1 Tax=Tribonema ... [more]
D8LEB6_ECTSI1.390e-3459.79IRK_C domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8M2_9PHAE9.590e-3359.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UC37_9STRA1.150e-1747.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HDT6_9STRA1.400e-1640.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2JZ67_9STRA7.040e-1640.20Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A482SDJ2_9ARCH2.140e-1539.08IRK_C domain-containing protein (Fragment) n=1 Tax... [more]
A0A485LG44_9STRA5.500e-1548.65Aste57867_20860 protein n=1 Tax=Aphanomyces stella... [more]
F0WGM8_9STRA9.610e-1549.33Animal inward rectifier K channel (IRKC) family pr... [more]
A0A6U9CWQ7_9DINO2.820e-1449.28Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_130contigContig_130:33331..35618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175800|e_gw1.130.26.1
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
BRITEko00000,ko00001,ko04040
KEGG Pathwayko04725,ko04921,map04725,map04921
KEGG koko:K05005,ko:K05330
Descriptioninward rectifier potassium channel activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3827@1|root,KOG3827@2759|Eukaryota
Evalue2.28e-35
Seed ortholog2880.D8LEB6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPotassium channel, inwardly rectifying, Kir
Ec32 orthologEc-00_001630.2
TranscriptId176122
TrackFilteredModels1
ProteinId175800
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175800gene_14361Tribonema minus UTEX_B_3156 geneContig_130 33331..35618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14361_1exon_14361_1Tribonema minus UTEX_B_3156 exonContig_130 33331..33430 +
exon_14361_2exon_14361_2Tribonema minus UTEX_B_3156 exonContig_130 34436..34461 +
exon_14361_3exon_14361_3Tribonema minus UTEX_B_3156 exonContig_130 35451..35618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14361CDS_14361Tribonema minus UTEX_B_3156 CDSContig_130 33331..33430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175800Trimin1|175800|e_gw1.130.26.1Tribonema minus UTEX_B_3156 polypeptideContig_130 33331..35618 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14361 ID=mRNA_14361|Name=jgi.p|Trimin1|175800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_130:33331..35618+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCAAGCTGTGGTTCGCGCAGGAGGAGCGGCGCGCGATCGCCGC
GTTTGTCAAAGACAGGGAGCTGGAGGTCGTCGTCATCGTCGAGGGCATAG
ATACGAGCACGGGCAGCACGGTGCAGTGCCGCTACTCGTACGCCGTCGAC
AACATGGTGTGGGACCACGCGATAGGGCCGTGCGTCACCAAGGACGCCGA
CGGCAAGTGCGTGGTGGACTTCCTCAAGTTCCACGACGTGCGCGCCGCGC
CGCCGGACTGCATCGACTCCGGCTTCGTGCAGAGCTACGCGTGA
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protein sequence of jgi.p|Trimin1|175800

>Trimin1|175800|e_gw1.130.26.1 ID=Trimin1|175800|e_gw1.130.26.1|Name=jgi.p|Trimin1|175800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVD
NMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA*
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mRNA from alignment at Contig_130:33331..35618+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14361 ID=mRNA_14361|Name=jgi.p|Trimin1|175800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2288bp|location=Sequence derived from alignment at Contig_130:33331..35618+ (Tribonema minus UTEX_B_3156 )
ATGGACGCCAAGCTGTGGTTCGCGCAGGAGGAGCGGCGCGCGATCGCCGC
GTTTGTCAAAGACAGGGAGCTGGAGGTCGTCGTCATCGTCGAGGGCATAG
GTGAGCGTGGGGCAGGGGCTTATAAGAAGGGTTTGTTCGTCAAGGTGTTG
ATATGGAAAAAAGGTTAGCGTAGGGTTCAAATGAGGTTTAGGGTCAGAAC
TAGGGTTGAAGTTAGGGTTAGGGAGCGGCGCGCGATTGCCGCGTTCGTCA
AGGACAGGGAGCTGGAGGTCGTCGTTATCGTCGAGGGCATAGGTGAGGGG
GGGGGGGGCATGCATAGATCAAGGGTTGAAGTGAGTTTTAGGGTCAGAGC
TAGGGTTGAAGTCAGGGTAAGCGACGTGCAATCTGAGCTTTCATGCAATC
TGAGCTTTCATGTACTGATGGAAGTGATTATATCCATGCTGGCATAGCAA
TCACCAGATTGCTATGTCGCCGCTGCATTATGGGTACGGCCATATCATGG
TGACAGCACCAGCTCTCGTCCGATCGCTGAAGTTAAGCACCCTTGAGCGG
AGCTAGTACTACGGTGGGGGACCACGTGGGAAGCCTCCGTGCTGTACTCT
TTTTTTCCTTTAGAAAGAAACGTCTGCAAGTGCAGCAAGTCAAGTGTGTG
TTTGTAAACAAGACGAATACGAACAAGAAGGCTTATTATTTCAGTGGTGC
CTCACCACGAACCCTTGGTTGGGACTGCCCCCTTATCTCATGTAAATGTC
GCTGGTCGATGCTCCATAGAATTCATCACGCCTGGCACCAGCACGACACA
GCGATGCCATTTCCATACAGAGGATTGTCTGATGCTCCAAGTCTATGGAA
ACGCATCAAAGGATTGTAGAGCCTTAGGTGACCAGGTGTGGTTAGCCGTC
ATATTGATTGCCTTCTACCAACCGTGGTCGCCGCTGCTGCGGCAATTGGC
CACGAGTAAATCAGTGCCACCATACTGGTTGCGAGATGGCTGGCAATAGC
GCATCATGCAGCATGTGACATTCTGCACACACACACCGCCTACGATCCCA
GCCACAGCTCATGATGCGCCGCGTTCTGCTGTCTCCACCTGTCTCTGTGC
TGCAGATACGAGCACGGGCAGCACGGTGCAGGTGAGCGCTGACACAGTTT
GGTGATCGCACTTCAAGCACCACGTGTGGTGACCCTGGCCCTAAACTCAC
CACTGCCGTGGAGGTGCCGGTGCCTGTAAGCTCGCGCGCCATGTGCGCTT
AGCGCAGCTATGCAGCTGTCCTGCCTATGCGCACAAGAGCAGCGGAGCAC
TGTTGCCGCAATGCGCTGGCTGCGCTGCACGCCCCTGCGCCTTGCCCGCG
AGAATGCACAAATCAACTGACCGCCGCTGGGCTGTGCAGCAGTGCTCATC
GGCTGCACAACGTGGATGCCCATTTGCAGTCAGCGCTCCGCAAACGCCAC
ACCCCCTGGCTTGATCGTATCATTGTGCGGGTACAAGACCAGGCAACGAA
TGCAACGCGCTGCGGTGTGCAGCGCGGCATGCACGCGTGTAGTTGGGCGC
TGACAGGCGTCCGCCGCCTCAACTCCCGAAATAGGTTCCAGCACGTAGTA
TTGGCATTTGGTGTGTCCCGTGTCATTGCTCAACTCTGCAAGCGTGCCGC
TCGTGCGCCATGCATACGGCAGCCGTGTCAGCAGTGTTCGCTATTCGTTT
TGGTGCATCAGCCTCCGCTGACCTCGTGCCGTACAATGTGCTGCGGACAT
TTGACACATCACCATCCATGGTCTAGCACCGCGCGACCCCGAACTTGATT
GCGCGCGCGCGGCCGCGTCCATGTCGGGCCGCGCTACGACAAGACATTGC
ATTGCCAGCTGCGCCTGTTGCTGTACCTAGCGGGGACCTCGCTGCGCGCG
CAACGTGGAGCGCTGCAGCAGCACGCTCAACCTCGCCTCGCGCGACGGCG
GCGCTGCTGTGCAACTTTGCACGGCGCAGATCCTCACTCTCACACTGTAT
TGGCGTTTTTGCACCCGCCGCACGCCAGCGCTGCGGCAATGCGCGCGTTG
CCGCGCCCGCTTGTGTGAGATTTTAACCCCCCTTTGCGGCGTGTTTCTGT
CCCTCCGGGCGCGCGCGCAGTGCCGCTACTCGTACGCCGTCGACAACATG
GTGTGGGACCACGCGATAGGGCCGTGCGTCACCAAGGACGCCGACGGCAA
GTGCGTGGTGGACTTCCTCAAGTTCCACGACGTGCGCGCCGCGCCGCCGG
ACTGCATCGACTCCGGCTTCGTGCAGAGCTACGCGTGA
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Coding sequence (CDS) from alignment at Contig_130:33331..35618+

>mRNA_14361 ID=mRNA_14361|Name=jgi.p|Trimin1|175800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_130:33331..35618+ (Tribonema minus UTEX_B_3156 )
ATGGACGCCAAGCTGTGGTTCGCGCAGGAGGAGCGGCGCGCGATCGCCGC
GTTTGTCAAAGACAGGGAGCTGGAGGTCGTCGTCATCGTCGAGGGCATAG
ATACGAGCACGGGCAGCACGGTGCAGTGCCGCTACTCGTACGCCGTCGAC
AACATGGTGTGGGACCACGCGATAGGGCCGTGCGTCACCAAGGACGCCGA
CGGCAAGTGCGTGGTGGACTTCCTCAAGTTCCACGACGTGCGCGCCGCGC
CGCCGGACTGCATCGACTCCGGCTTCGTGCAGAGCTACGCGTGA
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