mRNA_14360 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175793
Unique NamemRNA_14360
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A836CL18_9STRA (Inward rectifier potassium channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL18_9STRA)

HSP 1 Score: 525 bits (1353), Expect = 1.080e-188
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 
Query:    1 MRARSCRDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAIWSVICDCC 774
            MRARSCRDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAIWSVICDCC
Sbjct:    1 MRARSCRDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAIWSVICDCC 258
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BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A835YU47_9STRA (Inward rectifier potassium channel-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU47_9STRA)

HSP 1 Score: 383 bits (983), Expect = 2.670e-132
Identity = 189/228 (82.89%), Postives = 205/228 (89.91%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLV 702
            R S + QS+GRWNI RNTKD+ +R LF+ND FHTVLHMTTWKVL  LF  YL VV+ FA +YL I+ FDGCN+GIVDYREAYYFSLETMTTVG+GTQDVFFGRCWSVMVIITAQAC GLLIDALLIG+LFARL RPQTRASTVVFS+KAVLRRIRGEYYFMFQV ELRKHQLLET VRCYAVRHHRTLPIDA G LD++ PPETVHYQTHNMRLQHPDDELGG++LLV
Sbjct:   32 RSSHFQQSFGRWNIGRNTKDEGMRKLFSNDWFHTVLHMTTWKVLGALFLTYLAVVTVFAALYLAIARFDGCNLGIVDYREAYYFSLETMTTVGFGTQDVFFGRCWSVMVIITAQACSGLLIDALLIGLLFARLGRPQTRASTVVFSDKAVLRRIRGEYYFMFQVAELRKHQLLETHVRCYAVRHHRTLPIDANGALDESQPPETVHYQTHNMRLQHPDDELGGSMLLV 259
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 5.140e-72
Identity = 138/291 (47.42%), Postives = 176/291 (60.48%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHR---------------------------------------------TLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAIWS 756
            R+  Y+QS GRWNI R      ++ L   D FH+ L+ +T K++  +   YL +V  FA++Y  ISH  GCN+ +   RE + FSLETMTTVGYGT D  FG CW ++ +++ QAC GLLIDA LIG+LFARL+RPQTRA+TVVF+  AV+RR+RGE YFMFQ+GELRKHQLLET+VRCYA+RH R                                             +  + +A  L  A  P+ V +Q+H+MRLQHPDDELGG LLLVLPQ  AR  V  +   WS
Sbjct:   83 REGPYYQSVGRWNIRRLKTQADVQKLIGLDPFHSFLNQSTLKIILRIIGLYLSLVFLFAIVYTTISHTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWVMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQIGELRKHQLLETRVRCYALRHERLTYNPCGNNNNVGSSESSGLGARSASVSSNIXXXXXXXXXXXXXXSTTVTSAAELA-ARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQ--ARGTVVHRIDAWS 370
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A7S2JZ67_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ67_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.160e-59
Identity = 114/267 (42.70%), Postives = 155/267 (58.05%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDG-------------------------CNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRT----------LPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            R + YHQS G W I R   D      +  D FHT+L++ TW++ + +F AYL +V+ FAL+YL+I+  +                          C M I ++ EA YFS+ TMTT+GYG  D +FG CW+    +  Q    L  +A+ IGV+F RL+R Q RA+TVVFS+KA++RRI+G+ YFMFQ+ ELRKHQL+E  VR Y VRH R               +   +D+   P+T ++QTH MRLQHPDD LGG LL+ LP V
Sbjct:   65 RSAGYHQSRGEWRIHRKIPDK-FHVYWFQDVFHTILNLPTWRIFAIMFVAYLCIVTGFALLYLLIAKVNMYVVDVPINGSSDEASTGENSVTKSYCGMDIDNFSEAMYFSISTMTTIGYGISDYYFGDCWTPFAAVFMQVFTALTFNAVAIGVIFQRLSRGQNRATTVVFSDKAIIRRIKGKLYFMFQLCELRKHQLVEAHVRVYCVRHEREHKESNDVEMRKESSSXXXVDEEEEPDTCYFQTHAMRLQHPDDALGGFLLMALPNV 330
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A024TCR3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCR3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.090e-56
Identity = 102/215 (47.44%), Postives = 144/215 (66.98%), Query Frame = 1 
Query:   88 RTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDG-CNMGIVDYREAYYFSLETMTTVGYG--TQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRAR 723
            R ++ +D FHT+++  T +V++ +F AY +V+  FAL Y  +S  D  CN+G+    EAY FS+ET+ T+GYG  + D+F+G C S+ VI+T ++  G+ +DA+ IG+ F R +R  TRA +++FSN AV+R+IRG+YYFMFQV E RKHQL E  VRCYAVRH   +  D           ET  +QTH+MRLQ PDD++G  LL+ LPQV  R
Sbjct:   66 RKIYWDDLFHTIINTRTSRVIAGVFGAYAIVIFLFALCYRYVSVNDPTCNVGVTTIMEAYIFSVETIMTIGYGAPSNDIFYGGCGSMAVILTLESFSGIFLDAVCIGMFFVRFSRATTRACSIIFSNFAVIRKIRGDYYFMFQVCERRKHQLAEAHVRCYAVRHEFDVSKDGVA-------EETALFQTHHMRLQQPDDDIGAFLLMALPQVVVR 273
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A7S4E6V3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6V3_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.790e-55
Identity = 109/232 (46.98%), Postives = 145/232 (62.50%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            RDS  HQS GRWNI R    D +  ++ +D F+T++H+   ++L  +   Y+  V  F + YL  S  D C M   D  EAYYFSLETM T+GYGTQD FFG CW  + II  Q  CGL+I++L  G++F RL R + R STV+FS+KAV+RR+ G YY +FQV ELR+H LL+ K+R +AVRH R    D  G           +YQ H M+L+ P D+ GG LL+ LPQ+
Sbjct:   99 RDSYDHQSVGRWNIKR-VGGDWVH-MYLDDWFNTIVHLPILRLLFLMVIIYVACVFVFGVGYLSFS--DECGMDFGDRLEAYYFSLETMATIGYGTQDYFFGHCWEPLAIINVQVVCGLVIESLYFGIIFHRLTRGRHRQSTVLFSDKAVVRRVDGSYYLVFQVCELRRHHLLDAKIRVFAVRHER----DEHGA---------AYYQAHRMQLRRPRDDTGGLLLMALPQL 313
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A024TD03_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD03_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.140e-54
Identity = 101/212 (47.64%), Postives = 143/212 (67.45%), Query Frame = 1 
Query:   88 RTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDG-CNMGIVDYREAYYFSLETMTTVGYG--TQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            R ++ +D FHT+++  T +V++ +F AY +V+  FAL Y  +S  D  CN+G+    EAY FS+ET+ T+GYG  + D+F+G C S+ VI+T ++  G+ +DA+ IG+ F R +R  TRA +++FSN AV+R+IRG+YYFMFQV E RKHQL E  VRCYAVRH   +  D           ET  +QTH+MRLQ PDD++G  LL+ LPQV
Sbjct:   66 RKIYWDDLFHTIINTRTSRVIAGVFGAYAIVIFLFALCYRYVSVNDPTCNVGVTTIMEAYIFSVETIMTIGYGAPSNDIFYGGCGSMAVILTLESFSGIFLDAVCIGMFFVRFSRATTRACSIIFSNFAVIRKIRGDYYFMFQVCERRKHQLAEAHVRCYAVRHEFDVSKDGVA-------EETALFQTHHMRLQQPDDDIGAFLLMALPQV 270
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A024TF25_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF25_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.760e-54
Identity = 101/212 (47.64%), Postives = 143/212 (67.45%), Query Frame = 1 
Query:   88 RTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDG-CNMGIVDYREAYYFSLETMTTVGYG--TQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            R ++ +D FHT+++  T +V++ +F AY +V+  FAL Y  +S  D  CN+G+    EAY FS+ET+ T+GYG  + D+F+G C S+ VI+T ++  G+ +DA+ IG+ F R +R  TRA +++FSN AV+R+IRG+YYFMFQV E RKHQL E  VRCYAVRH   +  D           ET  +QTH+MRLQ PDD++G  LL+ LPQV
Sbjct:   66 RKIYWDDLFHTIINTRTSRVIAGVFGAYAIVIFLFALCYRYVSVNDPTCNVGVTTIMEAYIFSVETIMTIGYGAPSNDIFYGGCGSMAVILTLESFSGIFLDAVCIGMFFVRFSRATTRACSIIFSNFAVIRKIRGDYYFMFQVCERRKHQLAEAHVRCYAVRHEFDVSKDGVA-------EETALFQTHHMRLQQPDDDIGAFLLMALPQV 270
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A0P1B7L9_PLAHL (Animal inward rectifier k channel (Irk-c) family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7L9_PLAHL)

HSP 1 Score: 188 bits (477), Expect = 6.210e-54
Identity = 101/235 (42.98%), Postives = 149/235 (63.40%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIIS-HFDGCNMGIVDYREAYYFSLETMTTVGYGT--QDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            R   + QS G +N++R  K  H R ++ +D FHTV++  + +++  +F AY  ++  FAL Y+ IS  +  C++G+    +AY FSLET+ T+GYG    D+FFG C S+  ++T ++  G+++D++ IG+ +AR AR   RA+T++FSN AV+R+IRG YYFM Q  E RKHQL+E  VR YAVRH            DD + P    +Q H MR+Q PDD+ G  LL+VLPQV
Sbjct:   33 RQGRFKQSLGHFNVNR--KGGHWRRIYWDDPFHTVINTRSSRIILGIFIAYSFIILLFALAYMDISLRYPACHVGLSSITDAYVFSLETIMTIGYGAPMDDIFFGGCTSIATLLTFESFAGIILDSVCIGIFYARFARANQRANTIMFSNSAVIRKIRGHYYFMLQTCERRKHQLVEAHVRLYAVRHE---------VGDDTDEPNETLFQCHQMRVQQPDDDCGAMLLMVLPQV 256
[Close]
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Match: A0A8K1CKD0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKD0_PYTOL)

HSP 1 Score: 186 bits (472), Expect = 2.330e-53
Identity = 108/235 (45.96%), Postives = 152/235 (64.68%), Query Frame = 1 
Query:   19 RDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIIS-HFDGCNMGIVDYREAYYFSLETMTTVGYG--TQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAGCLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQV 714
            R+  + QS GR+NI R   D   R ++ +D FHTV++  T ++ + +F AY +V+  FAL YL IS +   C++GI    EAY FSLET+ T+GYG  T D+F+G C ++ V++T ++  G+ +D++ IG+ +AR AR   RA TV+FSN AV+R+IRGEYYFM QV E RKHQL+E  VR YA+RH           L     P+ + YQ+H MR+Q PDD+ G  LL+ LPQV
Sbjct:   20 REGRFRQSMGRYNIKRVGGD--WRRIYTDDLFHTVINTRTSRIATGIFLAYALVIFFFALAYLDISMNRQECHVGIKTLMEAYIFSLETIMTIGYGAPTNDIFYGGCSTMAVLLTLESFAGIFLDSICIGMFYARFARANKRAQTVMFSNTAVIRKIRGEYYFMLQVCERRKHQLVEAHVRLYAMRH----------VLAHDGSPDML-YQSHQMRVQQPDDDTGAMLLIALPQV 241
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175793 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL18_9STRA1.080e-188100.00Inward rectifier potassium channel-domain-containi... [more]
A0A835YU47_9STRA2.670e-13282.89Inward rectifier potassium channel-domain-containi... [more]
A0A6H5K8M2_9PHAE5.140e-7247.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2JZ67_9STRA1.160e-5942.70Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A024TCR3_9STRA3.090e-5647.44Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S4E6V3_9STRA8.790e-5546.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024TD03_9STRA1.140e-5447.64Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A024TF25_9STRA2.760e-5447.64Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0P1B7L9_PLAHL6.210e-5442.98Animal inward rectifier k channel (Irk-c) family p... [more]
A0A8K1CKD0_PYTOL2.330e-5345.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_130contigContig_130:22708..28341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175793|e_gw1.130.25.1
DescriptionInward rectifier potassium channel
COG categoryP
Max annot lvl4776|Peronosporales
EggNOG OGsKOG3827@1|root,KOG3827@2759|Eukaryota,3QBUM@4776|Peronosporales
Evalue6.19e-55
Seed ortholog4792.ETI51103
Hectar predicted targeting categorysignal anchor
TranscriptId176115
TrackFilteredModels1
ProteinId175793
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175793gene_14360Tribonema minus UTEX_B_3156 geneContig_130 22708..28341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175793Trimin1|175793|e_gw1.130.25.1Tribonema minus UTEX_B_3156 polypeptideContig_130 22708..28341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14360_1exon_14360_1Tribonema minus UTEX_B_3156 exonContig_130 22708..22859 +
exon_14360_2exon_14360_2Tribonema minus UTEX_B_3156 exonContig_130 23117..23236 +
exon_14360_3exon_14360_3Tribonema minus UTEX_B_3156 exonContig_130 24320..24338 +
exon_14360_4exon_14360_4Tribonema minus UTEX_B_3156 exonContig_130 25724..25845 +
exon_14360_5exon_14360_5Tribonema minus UTEX_B_3156 exonContig_130 26691..26784 +
exon_14360_6exon_14360_6Tribonema minus UTEX_B_3156 exonContig_130 28072..28341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14360CDS_14360Tribonema minus UTEX_B_3156 CDSContig_130 22708..22859 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14360 ID=mRNA_14360|Name=jgi.p|Trimin1|175793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_130:22708..28341+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTCGCTCGTGCAGGGACAGCACGTACCACCAGAGCTACGGGCG
CTGGAACATCGACCGCAACACCAAGGACGACCACATCCGCACGCTCTTCA
ACAACGACAGGTTCCACACGGTGCTGCACATGACGACGTGGAAGGTGCTG
AGCTACCTATTCTTTGCGTACCTCGTGGTGGTATCGACGTTTGCGTTGAT
TTACCTCATCATATCGCACTTCGACGGCTGCAATATGGGCATCGTCGACT
ACAGGGAGGCGTACTATTTTAGTCTGGAGACCATGACGACGGTCGGCTAC
GGCACGCAGGACGTGTTCTTTGGGCGCTGCTGGAGCGTCATGGTCATCAT
CACGGCACAGGCATGCTGCGGCCTGCTCATAGATGCGCTGCTGATTGGCG
TGCTCTTCGCCAGGTTGGCGCGGCCGCAGACGCGCGCGAGCACCGTGGTG
TTCAGCAACAAGGCAGTGCTCAGGCGCATCCGCGGGGAGTACTACTTCAT
GTTCCAGGTGGGCGAGCTGCGCAAGCACCAGCTGCTGGAGACCAAGGTGC
GCTGCTACGCGGTGCGCCACCACCGCACGCTGCCGATAGACGCGGCGGGC
TGCCTCGACGATGCGAACCCGCCCGAGACGGTGCACTACCAGACTCACAA
CATGCGCCTGCAGCACCCCGACGACGAGCTGGGTGGAGCGCTGCTGCTGG
TGCTGCCGCAGGTGCGCGCGCGCGTAGCAGTGTTCCAGAAGTATGCCATA
TGGTCGGTCATTTGCGACTGCTGTTAG
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protein sequence of jgi.p|Trimin1|175793

>Trimin1|175793|e_gw1.130.25.1 ID=Trimin1|175793|e_gw1.130.25.1|Name=jgi.p|Trimin1|175793|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MRARSCRDSTYHQSYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVL
SYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGY
GTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVV
FSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRTLPIDAAG
CLDDANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAI
WSVICDCC*
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mRNA from alignment at Contig_130:22708..28341+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14360 ID=mRNA_14360|Name=jgi.p|Trimin1|175793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5634bp|location=Sequence derived from alignment at Contig_130:22708..28341+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCTCGCTCGTGCAGGGACAGCACGTACCACCAGAGCTACGGGCG
CTGGAACATCGACCGCAACACCAAGGACGACCACATCCGCACGCTCTTCA
ACAACGACAGGTTCCACACGGTGCTGCACATGACGACGTGGAAGGTGCTG
AGGTGAGGGGGGTGGAAAGCAGCGGGCAGACAGGGGGTGTCGCTATGTTT
GAATCAGGGTAGCGCTGATGAGAGGAGGCAACGGAGATGGCGTTGTACAG
CATGTAGAGATGCCAATGCCCATGCGACACAATCGCAACGGCCACATGAT
GGAACCCGGTGCATGCAGTGTTGCGCTAGTGACAACAGGGGCCTCAATCA
CTGACTGCTCACCCCTTACCCCCTCCCCTCCCCCCGAACCCCCCCCTTCC
TTCCTGCAGCTACCTATTCTTTGCGTACCTCGTGGTGGTATCGACGTTTG
CGTTGATTTACCTCATCATATCGCACTTCGACGGCTGCAATATGGGCATC
GTCGACTACAGGGAGGCGTACTATTTTAGGTACGATCTGCAATATTTGTA
CTTCAAATATACTTTGTAATACTTTTGGCATCATTTTTGGCAGTCCTCGC
TGGTAGTGCAGGGAAAAGCCCAGGACTTTGGTATGATATTGCAGAAGCGT
TTTTTCATTACAAAAGGTTGCCTTCAGCACCTGACAGTACTCACAGGTTA
ATGACAATTATGCATGCCTGTCACCGTATGGTTTTGTGGTCCGAAAGCGG
ACATGCGCCAAGATAGTCTCTGTAGTTTTGGTTGCAAAGATGGCGTGCAT
GATCATCTGGCACATGATGTGTCAACGGCTGTGGGGTAGTATGTTGTGGC
TGCTGTTGAATGTGGGGAGCGTAGGGTTAGGGTGAAAATTGGGGTCAGGG
CTAGGTTAGGGCAAGGGTTGAACCCTGCGTTGTGTGCCACAGTACGTGTG
CGCGCTGTATGACAGTCACGCGCGTGCACTCAAGTGTGCGCGGATCCGCG
CGACAGGCGGCGGCGCTGGCGAGGTGCCGCTTTGTACCCTCGGTTTTGGT
CGAAGCGACGCAGGGCAGGGGTTGAGCAACAGAGCGGACAATACCCAACT
CATTTTGAGGGGCCTGCACGCCACTTTCTTGTACCTTGGGTGCTACACAT
CGTTGACGTTGCTGCCAGTTACCCGAGATCCGTGCTAGCCGTCACGCGGG
GAATGCGTCTGCACGCAAAACACCCTGTATACCTTGTGGCCGTTTCCACC
CTGGAGATGCACCGTGTCAACTTCAGTTATAGAGTGCCAGTTTTGAAGTG
CACGTGCCACGCACTGCTCACCTGATGGTATGCACAGTTGCACCTTGCGC
ATAGTTGCACCTTGCAGCGATACTATAGCAAGTTCTGCACAGACCCAATG
GCTGCATGTCATTTGCACGTGTCCGTGCCTTGCTCACGGCGTGTCCAGTG
GGCATGTAACGTTGCACTTGGCCAACCATCTCGAATAGCATTATTTGCAC
GAGCGCTCGCCTGCTTCTGATTGTACGCATGACGTGTGAGTGCAAGCGCC
ACTGACATCGTACTCGTTTGCCTTGCCTTCCCGCGCATGTTATTGCTTTT
GAGGGCCACCAGTCTGGAGACCATGACGACGGTGAGCACTGTTGCTGATT
GCCAACATTATCCCTACCCCTAACCCTACGCATCGACCAGCACGAATGAT
AGGTGATATGCAGATCGACTGAGGCTATACGATGCATCGCTCGTGACGAA
AAACGGTAATGATTTCGAATGCCCTGAAAGTGTGGTCGGGAGCTCTGAAC
CGAACAGTAGCGGCGGTCGATCGCGAGTGTGCTCCCACTTTTTGCCTACG
GCAGCGCTTGACATGTTTACAGCTTCAGGTGATCACAAAAGCACCATTGC
GGACACTCTTTCACCTGTAACGCCTGTAGCTCGGGCACCGTAATTCGGGC
ACTGTAGCTCAGGCACTGTCCCGGCAGAGCTTGAGCCACAGATTGGAGTA
CGTGCGTGCCGCCCATTTGCTCCCCCTGTGCTGGCACATCCTCTCCAGAC
GCGCTAGAGTGGGGCACAAGCTGCATCAGCCACTTGCTTTCTCGCCGCAT
GCAGAGTGTCCCGGGGGGGGGGGGGGTACCCTGCCGCATGACCGCAGCCT
TGTTTTCGCAGCAGCTCTCCGTGCGCATGCGCCGCGATGTGCAAGCAGTG
CACAGTTTGTACACACAGTGCACAGCTTGTGCGCAGCCCTCGCAGCTCCC
GCCGCGCGGTGTGATCGCGGCATCAGCGCGGCGGCGCCGCGAGGCGCACG
TCACACATGAAGTCATGCTACTGTGAATGTTGGTAATTGCGTCGTACTGC
GGCAGGCGCGTGGATCACTGTGGCCGCCTCGGTGTGCGCGCGTGCGCTGC
ACCGCAGTGGCGGCGGCAACGCACGCGGCCATCTCCCGCGCTCTTCTCGA
CGATCCTCTCCGGTCCGGCCAGCTTGATGCGCACTTCAACCAAGGCAACC
TCAACAATGGCAGCGTCGCTGCTCGCTGCGCGCCGAAACCTGCGCCGTGA
ACGTGTGCGCCGCCACGCTGACCCTCGCCCGCACCCTATGCCGCGCAGGT
TGGCTATGGCACGCAGGGCGTGTTCTTTGGGCGCTGCTGGAGCGTCATGG
TCGTCATCCGTTACAAGTGATGGTGATCCCTATAAGCGACACTCGCACAG
CCTATTAGAGCTGACCTATGCCTCTCTAAGTGCATGATCTCTGTTTGCCC
CGGTGTACCGGTGTTCGAAGTACACGATCTTTTTCCCGCACCACGAGGTC
GTCATCACTGCACACGGCACCTGTGCGCTGCCCCCTCAGGTCGGCTACGG
CACGCAGGACGTGTTCTTTGGGTGCTGCTGGAGCGTCCCACGGTTGTCAT
CTGTCACAGCAACACTCGTTCATCACTCGCATCAACGCAGCCAGTCACAT
CATCTGGCTGATATATACATGCCAATGGGAACGAACGCATGTCGCTCCCG
TGCTCTGCCCCCTCAGGTCGGCTACGGCACGCAGGACGTGTTCTTTGGGC
GCTGCTGGAGCGTCATGGTCATCATCACGGCACAGGCATGCTGCGGCCTG
CTCATAGATGCGCTGCTGATTGGCGTGCTCTTCGCCAGGTGCGCGCTGCG
CGCCAGTGATGCTTTGAGACAGTTTTGAACGTGCTGATGACGCATTGGTA
TGCTCATCTTGGGAGGCTTGGGGATTGGGGGGGGGGGGGCTGGAATGGTA
ACTATGACGGCGGCTTGTAATTTCAAGTGCACTTGAGGTTGGACAGTCTA
CTCGTTGTTTGGCCTGCTCATAGATGCGCGCTGCTCATCGGCGTGCTCTT
CGCCAGGTGGGCGCCAGCGAGATGCTGGAAGGTGTTGAGAATGCGTTGAC
CAAGCATTGGTTGCTCTTGAAGACGCGCTTGTGGATTGGGGGCGGGGGGG
GGGGGGGGGGGGGGGTAAAGATTAAGTCGGCTTAGAGTTGAGTAGATGTG
AGTTTGATCAGTTTGCTCAATGTTTGGCCTGCTCATCGACGCGCTGTTGA
TCGGCGTGCACTTTGCCAGGGCGGGCTCCGCGTCAATTATGCATACTTCG
GCGTACGCTCACCGCATCGCTCGCGCTCGCGCCGTCACAGACGAGCACCG
TTGTGTTCAGCAGCATGTATGCCGCATGTCTGAAGGATTCTGCCATTCAT
GCATACCTTCGCTCGAGCTCATGTTGCGCTGCTGCAGATGCGCGCGAGCA
CTGGGGTGTTCAGCACCACATATGCAATATGATTGTACCATTATGTTGAG
TTCGAACCACTGCGTCACCCGAGCTCACGCTGCGCCTTTTGCAGGCTGGC
GCGGCCGCAGACGCGCGCGAGCACCGTGGTGTTCAGCAGCATATACGCCG
CATGTTTCCATGATGGTGCCATACACGCATACCCTTGACGAGCAACCGAT
GCATTGCTCAATCTCACATCGTGCCTCGCCCAGGTTGGCGCGGCCGCAGA
CGCGCGCGAGCACCGTGGTGTTCAGCAACAAGGCAGTGCTCAGGCGCATC
CGCGGGGAGTACTACTTCATGTTCCAGGTTTGTGCGCGTCGGGCCTTATT
AGTGGGAGTGTGGAAAAGACATGCCGGTGCCCCCTCCCCAAGTGATGTAC
ACGTGAGCGCAATCAGTTGCACTGTAGTGCACCAGCGCGAGCCGCTTACG
CTGCGGTGGTAGGGAGCTGGTCGCGCAGAACAGTGGCCGCTGCAAGCGCT
CTGTTGCTAATTTGTGTTTCGCTGTTCGCAATCCTTAGTGGACCTGAGCA
CTAGTGCTTTTGAAGCGATGCCTCTTCGAGTTTCTTGAATCACGATTTGT
GGGGGTACGGCGCCTCTGTGGCAGAGCGTGCACGATCCTCAACATCAACC
CTAGGGCTATTGCATGCAATGAACGTACTTGAGAAGCACAATCAACAATG
TGAGCGCACCGCCTGGCAACGACGACACGCGCGTCGCACATATGACTATG
CTTGCTGGGCGCCCTCTTGCAGTCGCATCGTCGGCACCTGTGAATTCATG
AACGTCCAAGTGAATGGCCAATGAATGGCGCAAGTATGAATGGCACAAGT
CTGATACGAGCTCTTAGCGAGCCGATACTACAAAGTACTCCAATATACGC
CAGTCTTGCCAGCACGCGCGCGGCGCTCCTGTCACGCCAAACGCGCTGCA
CCTCTGATGCAGGCTGCCTTCACGTCAGGCAGCAGTGCTCACCGCACGCT
GTGACAGGCGGGCGCGCTGCGCAGGCACCTGCTGCTGGTCAAGCCCGCGC
TGTGCGTCGCTGCCGACTCGCGCAACCGCCATTTTACTTCATGAAGTATC
TGCACCATACAGGGACGTATGTACGTCTGTCAGTCTGAGCTGTACACAAC
AAGCCACAGCCGCGGCGGAGCATCATCAAGGCAGCGGCTGAAAGCGCCCG
CTCGCTGCTCGCGACAGGTGGGCGAGCTGCGCAAGCACCAGCTGCTGGAG
GCCAATTCTTAAGGCCGCACTGCGCGTCGCTGCCGCCTCGCTCGGCCTGC
TGTCGTCCTCAGTGTACAGAGCATTGAACCACTGCCCACAACGCAGCGCG
TGACGAGGCAAGCGCACATCGCGGCAGCTGAAACCGCCACGCTCGCTGAT
CGCTGCCGCAGGTGGGCGAGCTGCGCAAGCACCAGCTGCCGGACACCAGT
GTACGAGGCCGCGCCGCGCGTCGCTGCCGCCTCGCGCAGCCGCCATCTCA
TGCGTGCAACATAGGGAACAACTACGTATGAGCTATGAGCATCAAGCCAC
AAACACGGCAAACCATCATCACAGCAGCAGCTGAAACTGTCATGCTCGCT
GAGCGCTGCGGCAGGTGGGCGAGCTGCGCAAGCACCAGCTGCTGGAGACC
AAGGTGCGCTGCTACGCGGTGCGCCACCACCGCACGCTGCCGATAGACGC
GGCGGGCTGCCTCGACGATGCGAACCCGCCCGAGACGGTGCACTACCAGA
CTCACAACATGCGCCTGCAGCACCCCGACGACGAGCTGGGTGGAGCGCTG
CTGCTGGTGCTGCCGCAGGTGCGCGCGCGCGTAGCAGTGTTCCAGAAGTA
TGCCATATGGTCGGTCATTTGCGACTGCTGTTAG
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Coding sequence (CDS) from alignment at Contig_130:22708..28341+

>mRNA_14360 ID=mRNA_14360|Name=jgi.p|Trimin1|175793|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_130:22708..28341+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCTCGCTCGTGCAGGGACAGCACGTACCACCAGAGCTACGGGCG
CTGGAACATCGACCGCAACACCAAGGACGACCACATCCGCACGCTCTTCA
ACAACGACAGGTTCCACACGGTGCTGCACATGACGACGTGGAAGGTGCTG
AGCTACCTATTCTTTGCGTACCTCGTGGTGGTATCGACGTTTGCGTTGAT
TTACCTCATCATATCGCACTTCGACGGCTGCAATATGGGCATCGTCGACT
ACAGGGAGGCGTACTATTTTAGTCTGGAGACCATGACGACGGTCGGCTAC
GGCACGCAGGACGTGTTCTTTGGGCGCTGCTGGAGCGTCATGGTCATCAT
CACGGCACAGGCATGCTGCGGCCTGCTCATAGATGCGCTGCTGATTGGCG
TGCTCTTCGCCAGGTTGGCGCGGCCGCAGACGCGCGCGAGCACCGTGGTG
TTCAGCAACAAGGCAGTGCTCAGGCGCATCCGCGGGGAGTACTACTTCAT
GTTCCAGGTGGGCGAGCTGCGCAAGCACCAGCTGCTGGAGACCAAGGTGC
GCTGCTACGCGGTGCGCCACCACCGCACGCTGCCGATAGACGCGGCGGGC
TGCCTCGACGATGCGAACCCGCCCGAGACGGTGCACTACCAGACTCACAA
CATGCGCCTGCAGCACCCCGACGACGAGCTGGGTGGAGCGCTGCTGCTGG
TGCTGCCGCAGGTGCGCGCGCGCGTAGCAGTGTTCCAGAAGTATGCCATA
TGGTCGGTCATTTGCGACTGCTGTTAG
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