Trimin1|347568|estExt_Genemark1.C_Ctg_130065 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347568
Unique NameTrimin1|347568|estExt_Genemark1.C_Ctg_130065
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length222
Homology
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A836CP02_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP02_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 1.210e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL 221
            MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL
Sbjct:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL 221          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A835Z0S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S8_9STRA)

HSP 1 Score: 224 bits (572), Expect = 3.550e-72
Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 0
Query:   24 MRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIK 153
            MR F AKMGKALWAVFA+PGEAKLAAKAFTGGASGSLPF VTSI+EAL K AA++GG DLQLVVQPGFNIDEWIQ DTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKL YPGLHAAKDRFIK
Sbjct:    1 MRVFFAKMGKALWAVFAEPGEAKLAAKAFTGGASGSLPFWVTSIEEALRKGAASNGGRDLQLVVQPGFNIDEWIQWDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLFYPGLHAAKDRFIK 130          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A6H5JFY8_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFY8_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 6.230e-59
Identity = 109/220 (49.55%), Postives = 142/220 (64.55%), Query Frame = 0
Query:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------ERGSDPVVLQTSSTRPEYNNAAKLIKAAALE 213
            ++GKLDISLGETLDANR FAREL R+FSA+MGKALW        A+LA   +     G   FRV  I  A+  +   D  C +Q+VV PGF+++EWI LD+L                  MV+LNG+LDK+RGGYYP++ +PGL+ AK+RF+K FE VYYLKALP GW+FRR PEDWQV+ A       +R ++  VL ++  RP+YN A K ++AA  E
Sbjct:  177 VRGKLDISLGETLDANRSFARELARSFSARMGKALWL-------AELAQNTY-----GGTTFRVVGINSAI--KDLKDEECQMQIVVNPGFDVNEWIVLDSLVRP------------DVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQSEKRGQRAAESKVLSSTPDRPDYNTAVKTVQAAGRE 370          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A4D9D5M4_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5M4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.200e-43
Identity = 88/226 (38.94%), Postives = 130/226 (57.52%), Query Frame = 0
Query:    3 GKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------------ERGSDPV---VLQTSSTRPEYNNAAKLIKAAAL 212
            G++D+SLGE LD +R + RE +R F+ K G  LW +F D  EA LA K +     G + FR+  I  A+  +A+ D  C+LQ+ V PGFN+ E+I L+ +   G              M+V+NG+LD++RGGYYP++ YPGL+  K+R ++ FEPVYYLK    G+LFR++PE+WQ + A             ++G   V   V+ T   RP YN+    +K  +L
Sbjct:   10 GRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRW-----GGVNFRIMGIDTAM--KASKDEACELQIAVTPGFNVQEYINLEKVRRPGVP------------MIVVNGNLDRIRGGYYPRIFYPGLYKVKERMLQYFEPVYYLKPAQGGFLFRKFPEEWQQVLAYYDLQPGAGRGRGDKGRKQVLTKVVATCEERPAYNDVVNALKKESL 215          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: W7TLD5_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLD5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.260e-42
Identity = 88/226 (38.94%), Postives = 131/226 (57.96%), Query Frame = 0
Query:    3 GKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------------ERGSDPV---VLQTSSTRPEYNNAAKLIKAAAL 212
            G++D+SLGE LD +R + RE +R F+ K G  LW +F D  EA LA K +     G + FR+  I  A+  +A+ D  C+LQ+ V PGFN+ E+I L+ +   G              M+V+NG+LD++RGGYYP++ YPGL+  K+R ++ FEPVYYLK    G++FR++PE+WQ + A             ++G   V   V+ TS  RP YN+    +K  +L
Sbjct:   99 GRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRW-----GGVNFRIMGIDTAM--KASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVP------------MIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESL 304          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A2V3IVF9_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF9_9FLOR)

HSP 1 Score: 129 bits (324), Expect = 1.260e-33
Identity = 75/195 (38.46%), Postives = 110/195 (56.41%), Query Frame = 0
Query:    8 SLGETLDANRGFARELMRAFSAKM-GKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW-LFRRYPEDWQVIYAERGSDPVVLQTSSTRPEY 200
            +L E LDANR F R+LMR+   K   K L  +F D GEA+LA   +     G +PF +  I +   +     G   + ++V PGFNI EWI +  L +  +K           ++V +N   DKVRGGYYP+L YPGLH A+D+ +K FE +YY+K+   G  L RR+PE W++ YA++    ++ +    RPE+
Sbjct:   26 ALNELLDANRAFTRDLMRSLVPKYDAKDLRVLFPDVGEARLARDVY-----GDVPFGIGVIPKQQPEFVQRAG---VAVIVNPGFNISEWINIQNLVSEDSKC----------TLVTVNADFDKVRGGYYPRLFYPGLHKARDKVLKRFEEIYYIKSFSNGGTLLRRFPEGWKLFYADKDGTTLIWE-GEERPEF 201          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A7S0ZAT4_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAT4_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 3.310e-33
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 0
Query:    8 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW--LFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAK 205
            +L + LDANR  A  L +A   K G    A F D GE KLA  A+    + S   +++SIK  L     +D G  + LVV PGFN+DEW+ ++ L                P ++VLNG +D+VRGGYYP++ YPGLH  KDRF+  FEP+++LK    G   LFR+YPE WQ ++ +      ++    TRP Y +  K
Sbjct:  125 ALNQLLDANRNHALVLSKALE-KRGSVRVA-FPDAGETKLAKNAWK---NESDNIKISSIKAGLD----SDSGKSI-LVVMPGFNVDEWLDMEKLRIG-------------PPIIVLNGEMDRVRGGYYPRIFYPGLHRVKDRFLNKFEPIFFLKQFGSGLGVLFRKYPEPWQTLFRDSDGSLRLIAVDQTRPAYQDVEK 301          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: M1VKG6_CYAM1 (DUF1995 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VKG6_CYAM1)

HSP 1 Score: 125 bits (314), Expect = 8.000e-32
Identity = 77/215 (35.81%), Postives = 113/215 (52.56%), Query Frame = 0
Query:    8 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSI----KEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDT---LYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQ 215
            +L   LDAN   ARE+++ F+A   K L  VF D  EAK+A K +    S    F ++++    + A  ++  A     L  VVQPGFNIDEW+QL+    LY                S+VVLNG++D++R  YYP L YP L A + R+++ FEP+YYLK LP G LFR +PE WQ  +     +   +     RP +    + +   + E++
Sbjct:   52 ALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVY---GSSEHTFTLSALPLYERPAFLQQVEAPA---LVFVVQPGFNIDEWLQLERPALLYP-------------DASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQTFFCASPGEATRIAVDDERPTFPQTTQRLMELSREQR 247          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A5J4Z109_PORPP (Protein LOW PSII ACCUMULATION 3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z109_PORPP)

HSP 1 Score: 125 bits (313), Expect = 4.240e-31
Identity = 84/215 (39.07%), Postives = 117/215 (54.42%), Query Frame = 0
Query:    8 SLGETLDANRGFARELMRAFSA-KMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAA----ADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPS--MVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW--LFRRYPEDWQVIY-AERGSDPVVLQTSSTRPEYNNAAKLIKAAAL 212
            +L +  DANR  AR L  A +A K    +  VF D  EA LA K F  G S  LPF V S+  A   +A     A     L +VV PGFNI+EW+QL++L+             G PS  ++V+NG +D+VR GYYP+L YP LH  KDRF+  FEPV++ K    G   L+R++P DWQ ++  + G    +L   + RPEY    +  +A ++
Sbjct:   98 ALNQIADANREHARALATALAADKDAGTVCLVFPDAKEAALATKVF--GESTVLPFEVGSLAAAATMQAEREQPAGSTRTLFVVVNPGFNIEEWLQLESLHL------------GHPSDPILVINGGMDRVRSGYYPRLFYPKLHQTKDRFLCKFEPVFFYKPFGSGLGTLYRKFPADWQTLFHVKDGGGYRLLSQDAQRPEYKVVEQNFRAESI 298          
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A7S0G1A8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1A8_9RHOD)

HSP 1 Score: 120 bits (302), Expect = 2.230e-30
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 0
Query:    8 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPE-GWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAA 211
            +L ET+DANR  AREL+R F+ +    L   F D GEA LA +++     G   F +++I+      A  D   +L  V+ PGFNIDE+I L+                 + ++VV+NG LD++RGGYYP++ YP LH   +R ++ F  +Y+ K+ P  G L R YP  W++ Y     +   L  S  RP Y    ++++ AA
Sbjct:   18 ALNETMDANRRHARELIRGFTMEYSGRLSVAFPDKGEAVLAQRSWKVD-EGEERFYISTIEA-----APRDPNAELFFVLNPGFNIDEYINLENFDDE------------KRTIVVINGELDRIRGGYYPRIFYPKLHKVAERSLRKFVSIYFFKSYPNRGTLLRAYPGPWRLFYTSAQGEIKCLIESEERPSYQEMERILRKAA 204          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CP02_9STRA1.210e-153100.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z0S8_9STRA3.550e-7290.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JFY8_9PHAE6.230e-5949.55DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A4D9D5M4_9STRA1.200e-4338.94DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
W7TLD5_9STRA1.260e-4238.94DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A2V3IVF9_9FLOR1.260e-3338.46DUF1995 domain-containing protein n=1 Tax=Gracilar... [more]
A0A7S0ZAT4_9RHOD3.310e-3339.50Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
M1VKG6_CYAM18.000e-3235.81DUF1995 domain-containing protein n=1 Tax=Cyanidio... [more]
A0A5J4Z109_PORPP4.240e-3139.07Protein LOW PSII ACCUMULATION 3, chloroplastic n=1... [more]
A0A7S0G1A8_9RHOD2.230e-3035.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018962Domain of unknown function DUF1995PFAMPF09353DUF1995coord: 14..203
e-value: 2.7E-26
score: 92.9
NoneNo IPR availablePANTHERPTHR34051:SF1PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1coord: 82..192
IPR044687Protein LOW PSII ACCUMULATION 3PANTHERPTHR34051PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTICcoord: 82..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:722339..727542 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347568mRNA_5813Tribonema minus UTEX_B_3156 mRNAContig_13 722227..727542 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347568|estExt_Genemark1.C_Ctg_130065 ID=Trimin1|347568|estExt_Genemark1.C_Ctg_130065|Name=jgi.p|Trimin1|347568|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAK
AFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLD
TLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDR
FIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEY
NNAAKLIKAAALERQMIRRQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995
IPR044687LPA3