mRNA_5813 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347568
Unique NamemRNA_5813
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A836CP02_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP02_9STRA)

HSP 1 Score: 435 bits (1118), Expect = 1.870e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL 663
            MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL
Sbjct:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQMIRRQL 221
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A835Z0S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S8_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.350e-71
Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:   70 MRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIK 459
            MR F AKMGKALWAVFA+PGEAKLAAKAFTGGASGSLPF VTSI+EAL K AA++GG DLQLVVQPGFNIDEWIQ DTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKL YPGLHAAKDRFIK
Sbjct:    1 MRVFFAKMGKALWAVFAEPGEAKLAAKAFTGGASGSLPFWVTSIEEALRKGAASNGGRDLQLVVQPGFNIDEWIQWDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLFYPGLHAAKDRFIK 130
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A6H5JFY8_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFY8_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.280e-58
Identity = 109/220 (49.55%), Postives = 142/220 (64.55%), Query Frame = 1 
Query:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------ERGSDPVVLQTSSTRPEYNNAAKLIKAAALE 639
            ++GKLDISLGETLDANR FAREL R+FSA+MGKALW        A+LA   +     G   FRV  I  A+  +   D  C +Q+VV PGF+++EWI LD+L                  MV+LNG+LDK+RGGYYP++ +PGL+ AK+RF+K FE VYYLKALP GW+FRR PEDWQV+ A       +R ++  VL ++  RP+YN A K ++AA  E
Sbjct:  177 VRGKLDISLGETLDANRSFARELARSFSARMGKALWL-------AELAQNTY-----GGTTFRVVGINSAI--KDLKDEECQMQIVVNPGFDVNEWIVLDSLVRP------------DVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQSEKRGQRAAESKVLSSTPDRPDYNTAVKTVQAAGRE 370
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A4D9D5M4_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5M4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.960e-43
Identity = 88/226 (38.94%), Postives = 130/226 (57.52%), Query Frame = 1 
Query:    7 GKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------------ERGSDPV---VLQTSSTRPEYNNAAKLIKAAAL 636
            G++D+SLGE LD +R + RE +R F+ K G  LW +F D  EA LA K +     G + FR+  I  A+  +A+ D  C+LQ+ V PGFN+ E+I L+ +   G              M+V+NG+LD++RGGYYP++ YPGL+  K+R ++ FEPVYYLK    G+LFR++PE+WQ + A             ++G   V   V+ T   RP YN+    +K  +L
Sbjct:   10 GRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRW-----GGVNFRIMGIDTAM--KASKDEACELQIAVTPGFNVQEYINLEKVRRPGVP------------MIVVNGNLDRIRGGYYPRIFYPGLYKVKERMLQYFEPVYYLKPAQGGFLFRKFPEEWQQVLAYYDLQPGAGRGRGDKGRKQVLTKVVATCEERPAYNDVVNALKKESL 215
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: W7TLD5_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLD5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.140e-42
Identity = 88/226 (38.94%), Postives = 131/226 (57.96%), Query Frame = 1 
Query:    7 GKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYA-------------ERGSDPV---VLQTSSTRPEYNNAAKLIKAAAL 636
            G++D+SLGE LD +R + RE +R F+ K G  LW +F D  EA LA K +     G + FR+  I  A+  +A+ D  C+LQ+ V PGFN+ E+I L+ +   G              M+V+NG+LD++RGGYYP++ YPGL+  K+R ++ FEPVYYLK    G++FR++PE+WQ + A             ++G   V   V+ TS  RP YN+    +K  +L
Sbjct:   99 GRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRW-----GGVNFRIMGIDTAM--KASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVP------------MIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESL 304
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A2V3IVF9_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF9_9FLOR)

HSP 1 Score: 129 bits (324), Expect = 3.780e-33
Identity = 75/195 (38.46%), Postives = 110/195 (56.41%), Query Frame = 1 
Query:   22 SLGETLDANRGFARELMRAFSAKM-GKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW-LFRRYPEDWQVIYAERGSDPVVLQTSSTRPEY 600
            +L E LDANR F R+LMR+   K   K L  +F D GEA+LA   +     G +PF +  I +   +     G   + ++V PGFNI EWI +  L +  +K           ++V +N   DKVRGGYYP+L YPGLH A+D+ +K FE +YY+K+   G  L RR+PE W++ YA++    ++ +    RPE+
Sbjct:   26 ALNELLDANRAFTRDLMRSLVPKYDAKDLRVLFPDVGEARLARDVY-----GDVPFGIGVIPKQQPEFVQRAG---VAVIVNPGFNISEWINIQNLVSEDSKC----------TLVTVNADFDKVRGGYYPRLFYPGLHKARDKVLKRFEEIYYIKSFSNGGTLLRRFPEGWKLFYADKDGTTLIWE-GEERPEF 201
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A7S0ZAT4_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAT4_9RHOD)

HSP 1 Score: 131 bits (329), Expect = 7.130e-33
Identity = 79/209 (37.80%), Postives = 114/209 (54.55%), Query Frame = 1 
Query:   22 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW--LFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALER 642
            +L + LDANR  A  L +A   K G    A F D GE KLA  A+    + S   +++SIK  L     +D G  + LVV PGFN+DEW+ ++ L                P ++VLNG +D+VRGGYYP++ YPGLH  KDRF+  FEP+++LK    G   LFR+YPE WQ ++ +      ++    TRP Y +  K  +   +++
Sbjct:  125 ALNQLLDANRNHALVLSKALE-KRGSVRVA-FPDAGETKLAKNAWK---NESDNIKISSIKAGLD----SDSGKSI-LVVMPGFNVDEWLDMEKLRIG-------------PPIIVLNGEMDRVRGGYYPRIFYPGLHRVKDRFLNKFEPIFFLKQFGSGLGVLFRKYPEPWQTLFRDSDGSLRLIAVDQTRPAYQDVEKRFRYEQIQQ 310
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: M1VKG6_CYAM1 (DUF1995 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VKG6_CYAM1)

HSP 1 Score: 125 bits (315), Expect = 1.670e-31
Identity = 77/215 (35.81%), Postives = 113/215 (52.56%), Query Frame = 1 
Query:   22 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSI----KEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDT---LYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQ 645
            +L   LDAN   ARE+++ F+A   K L  VF D  EAK+A K +    S    F ++++    + A  ++  A     L  VVQPGFNIDEW+QL+    LY                S+VVLNG++D++R  YYP L YP L A + R+++ FEP+YYLK LP G LFR +PE WQ  +     +   +     RP +    + +   + E++
Sbjct:   52 ALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVY---GSSEHTFTLSALPLYERPAFLQQVEAPA---LVFVVQPGFNIDEWLQLERPALLYP-------------DASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQTFFCASPGEATRIAVDDERPTFPQTTQRLMELSREQR 247
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A5J4Z109_PORPP (Protein LOW PSII ACCUMULATION 3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z109_PORPP)

HSP 1 Score: 125 bits (313), Expect = 1.250e-30
Identity = 84/215 (39.07%), Postives = 117/215 (54.42%), Query Frame = 1 
Query:   22 SLGETLDANRGFARELMRAFSA-KMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAA----ADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPS--MVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGW--LFRRYPEDWQVIY-AERGSDPVVLQTSSTRPEYNNAAKLIKAAAL 636
            +L +  DANR  AR L  A +A K    +  VF D  EA LA K F  G S  LPF V S+  A   +A     A     L +VV PGFNI+EW+QL++L+             G PS  ++V+NG +D+VR GYYP+L YP LH  KDRF+  FEPV++ K    G   L+R++P DWQ ++  + G    +L   + RPEY    +  +A ++
Sbjct:   98 ALNQIADANREHARALATALAADKDAGTVCLVFPDAKEAALATKVF--GESTVLPFEVGSLAAAATMQAEREQPAGSTRTLFVVVNPGFNIEEWLQLESLHL------------GHPSDPILVINGGMDRVRSGYYPRLFYPKLHQTKDRFLCKFEPVFFYKPFGSGLGTLYRKFPADWQTLFHVKDGGGYRLLSQDAQRPEYKVVEQNFRAESI 298
[Close]
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Match: A0A7S0G1A8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1A8_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 4.560e-30
Identity = 72/210 (34.29%), Postives = 112/210 (53.33%), Query Frame = 1 
Query:   22 SLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPE-GWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEYNNAAKLIKAAALERQM 648
            +L ET+DANR  AREL+R F+ +    L   F D GEA LA +++     G   F +++I+      A  D   +L  V+ PGFNIDE+I L+                 + ++VV+NG LD++RGGYYP++ YP LH   +R ++ F  +Y+ K+ P  G L R YP  W++ Y     +   L  S  RP Y    ++++ AA + ++
Sbjct:   18 ALNETMDANRRHARELIRGFTMEYSGRLSVAFPDKGEAVLAQRSWKVD-EGEERFYISTIEA-----APRDPNAELFFVLNPGFNIDEYINLENFDDE------------KRTIVVINGELDRIRGGYYPRIFYPKLHKVAERSLRKFVSIYFFKSYPNRGTLLRAYPGPWRLFYTSAQGEIKCLIESEERPSYQEMERILRKAADDERL 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347568 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CP02_9STRA1.870e-153100.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z0S8_9STRA1.350e-7190.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JFY8_9PHAE2.280e-5849.55DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A4D9D5M4_9STRA3.960e-4338.94DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
W7TLD5_9STRA4.140e-4238.94DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A2V3IVF9_9FLOR3.780e-3338.46DUF1995 domain-containing protein n=1 Tax=Gracilar... [more]
A0A7S0ZAT4_9RHOD7.130e-3337.80Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
M1VKG6_CYAM11.670e-3135.81DUF1995 domain-containing protein n=1 Tax=Cyanidio... [more]
A0A5J4Z109_PORPP1.250e-3039.07Protein LOW PSII ACCUMULATION 3, chloroplastic n=1... [more]
A0A7S0G1A8_9RHOD4.560e-3034.29Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:722227..727542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347568|estExt_Genemark1.C_Ctg_130065
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CQRD@1|root,2R5HU@2759|Eukaryota
Evalue1.51e-65
Seed ortholog2880.D7G8C6
Hectar predicted targeting categoryother localisation
TranscriptId347890
TrackFilteredModels1
ProteinId347568
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347568gene_5813Tribonema minus UTEX_B_3156 geneContig_13 722227..727542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347568Trimin1|347568|estExt_Genemark1.C_Ctg_130065Tribonema minus UTEX_B_3156 polypeptideContig_13 722339..727542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5813_9exon_5813_9Tribonema minus UTEX_B_3156 exonContig_13 722227..722380 -
exon_5813_8exon_5813_8Tribonema minus UTEX_B_3156 exonContig_13 723170..723226 -
exon_5813_7exon_5813_7Tribonema minus UTEX_B_3156 exonContig_13 723854..723886 -
exon_5813_6exon_5813_6Tribonema minus UTEX_B_3156 exonContig_13 724310..724384 -
exon_5813_5exon_5813_5Tribonema minus UTEX_B_3156 exonContig_13 724725..724837 -
exon_5813_4exon_5813_4Tribonema minus UTEX_B_3156 exonContig_13 725667..725718 -
exon_5813_3exon_5813_3Tribonema minus UTEX_B_3156 exonContig_13 726376..726465 -
exon_5813_2exon_5813_2Tribonema minus UTEX_B_3156 exonContig_13 726841..726950 -
exon_5813_1exon_5813_1Tribonema minus UTEX_B_3156 exonContig_13 727449..727542 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5813UTR3_5813Tribonema minus UTEX_B_3156 three_prime_UTRContig_13 722227..722338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5813CDS_5813Tribonema minus UTEX_B_3156 CDSContig_13 727449..727542 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Trimin1|347568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=778bp|location=Sequence derived from alignment at Contig_13:722227..727542- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGGAAACTGGACATATCGTTGGGCGAGACTCTGGACGCAAATCG
CGGGTTTGCCAGGGAGCTCATGCGCGCTTTCTCTGCTAAAATGGGCAAAG
CGCTGTGGGCAGTGTTTGCCGACCCGGGCGAGGCCAAGCTGGCGGCGAAG
GCATTCACCGGGGGCGCCAGCGGCAGCCTGCCGTTTCGGGTCACCAGCAT
CAAGGAAGCACTAGGAAAACGGGCAGCTGCAGACGGCGGTTGCGACCTGC
AGCTGGTGGTGCAGCCTGGCTTCAACATCGATGAGTGGATACAGTTGGAC
ACTCTATATGCGGCCGGTGCAAAGGCCCGACAAGCTGCCGGGGCAGCGGG
CCAGCCATCGATGGTGGTGCTCAACGGCAGTCTGGACAAGGTCAGGGGCG
GGTACTACCCCAAGCTCGTCTACCCAGGGCTGCACGCTGCCAAGGACAGA
TTCATTAAGAATTTTGAGCCAGTGTACTACTTGAAGGCCCTGCCAGAAGG
CTGGCTGTTCCGGCGGTACCCGGAAGACTGGCAGGTCATATACGCCGAGC
GTGGCAGCGACCCAGTGGTGCTGCAAACTTCGTCAACAAGGCCTGAGTAC
AATAATGCCGCAAAACTCATCAAGGCGGCGGCACTGGAGCGGCAGATGAT
TCGGCGGCAGCTATAGCCGCGCTAGTGCAATGTGGCTTAGGTTCAACTTT
AGTCCAGCAAACGATCACAACACCTGGGTGCTCGGTGGCTGTTGCTCTGC
CGCATAGTTTCACTAGACATGGACGCTG
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protein sequence of jgi.p|Trimin1|347568

>Trimin1|347568|estExt_Genemark1.C_Ctg_130065 ID=Trimin1|347568|estExt_Genemark1.C_Ctg_130065|Name=jgi.p|Trimin1|347568|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAK
AFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLD
TLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDR
FIKNFEPVYYLKALPEGWLFRRYPEDWQVIYAERGSDPVVLQTSSTRPEY
NNAAKLIKAAALERQMIRRQL*
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mRNA from alignment at Contig_13:722227..727542-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Trimin1|347568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5316bp|location=Sequence derived from alignment at Contig_13:722227..727542- (Tribonema minus UTEX_B_3156 )
ATGCAGGGGAAACTGGACATATCGTTGGGCGAGACTCTGGACGCAAATCG
CGGGTTTGCCAGGGAGCTCATGCGCGCTTTCTCTGCTAAAATGGGTACGT
GCAGGAGGATCTGCGCCTTTACGTGCATGCTCAGTTGGTGATACTTCTTT
GGGGTATCTGACACGTATATTAAAGTATACCATGTACACACCACACAGTT
TAAAGGCGGTATGCAGCACAACTACATGCATCACACGCGCTTTGATGATC
AGCTGCCGTGCAGCAGCAGCCAACTCTCTCTTGAACATGACGGGCTGCGA
GATACGTAGCCTGGAGATGCCGCGCTTGCCTTACCGCCAGCGCAGATTGA
TGGTTTGCACTGCAGCTGGAGGCACAGTTCGAGTAGGGCTCGCACCTAAA
CACATTGGACTTGCTGGCCCACCAGCGAGCAGCTTTGTACATTGTCATGC
GACACACCTCTGCGTTACTCGCTGAATGCCGCAACTGCTCCTCATGTTGC
TTCACTGCGTCCTTTTTTGGGTGACATGGGTGACTGGCAAAGCACTGTGG
CCAGTGTCTCATGCTCCTTCACTGCGTCTCGTTGGGTGACAGGCAAAGCG
CTGTGGGCAGTGTTTGCCGACCCGGGCGAGGCCAAGCTGGCGGCGAAGGC
ATTCACCGGGGGCGCCAGCGGCAGCCTGCCGTTTCGGGTCACCAGCATCA
AGGTAGGTACGGAGCAGGAGGGTATGTATGCCGTAGGCACCCAGCAGGCA
GGCCGCCAGGACTTGTCCTTGGTGCAAGCGGCAGTCTTTCCAGAGCAGCT
TGTGAACTGGGCACGGTTGCCTTGAGCTACTGGAAGGATGCACAGAGCAT
TGGCTGTGTGATGTGGGAGTTGTCGAAGCGCGCTATCTGTGCGACTTGGC
AGGAAGCCCTGCAAGAAGTGCGTGCCGCGCCATGGAGGGCACAGCCAAAT
TGCGATATTTGAGGGCAGCGCACAGCTCGTGACGACTCCTGGGACACTGA
CGTGCCTATGAGCGGAGCAGTGCAAACATGTGTGACCTTATTCATCGCTG
CCGCTGTCGCGTTTCTTGCTTATGCAGGAAGCACTAGGAAAACGGGCAGC
TGCAGACGGCGGTTGCGACCTGCAGCTGGTGGTGCAGCCTGGCTTCAACA
TCGATGAGTGGATACAGGTCAGTGAATATGATGTGAACCTACCACAAGCT
GATGAGCTTGTATCTTTGACCATTTTGAACACCTGCAGGCACGCAACTCA
AGCCCCTCATGAGGCACTGTGGTGTTACCACGGGCTTCAGCAGTGGAGGC
CTCGCTTTAGGGCATCCCTGTTGTGTTCGTCCCGAGTCTTCATAAGCTGC
TTTACGGCGTCGTTGATCTGCATGCATTGCCCGTTGATGGGCATAACTAC
CTTGCCTTGCACGCCAGCCAGGCAGATGTGAGCCTGACGTCATTGGCAGT
GCAAATTGTCGACGCGAATTGCCAACTTGTCACACCTGCTCCTGCAGTTC
ACGTCCATCATGTGCATGAAGGCATGCTCGCCGGCGGTGATTTATTAGCA
GCGCACAATTATATACATAAATGCTCACCATACTTGCCCTACTTGAAGCA
TGCTGCGGATTTTGGTTTTCATCGGCCTGTGCACCCTTGTCATTTGCTCT
TGGCACCCACGAAGCACAACAAAAGAGTTGCGAGCTACTTGTACTAGGTA
CCTCAATGCTGCTGTTCAATCTTTTCCGAAACACACATTGGCCTCTGCGC
GAAGTCACTGCCAAGCTACATTGACTCAACTTTCAGGGAGCTGAGTGCTA
TGTTGTGCCCTGCTGTCCCTGCAGTTGGACACTCTATATGCGGCCGGTGC
AAAGGCCCGACAAGCTGCCGGGGCAGGTGATGATGGAATTCCTTCCAGTG
CTGACCCCATAATTGAGCCATGTACATGAAGAGCCAATGGCAATGACGTG
GCAGTACATACGCTTGTGAGTTTTGTAAAACCAAGGCGATGGATGGGGGA
CGGATTGAGCCCCATCTCACATCTGAGTGCTACTTAGACATTGTTGTCGA
TGACACCACAAGAAAAATTTGGCGCGTTACGATGCAACTGATTGTCACAT
TTATGTGCTTGGCTGCATTGGATCAGTCTGGATGGCACTTCACAACAGCG
CATCTGTCAAGAATCGTCTTCATTTTGTGACATCATACCTTATTCCGCGG
CTGCTGCTGCGACCTGAACAGCAATCACACACCATGCCTTGCCATAGTGA
GTCAGTGTTTCACCTCTTCAACTGGTCAGGATAGCGTCAATCATGCACTT
TTGCTCGTTTGATTTCAGATTGCCCAGCCCTGGAACACATTATTTGCCAG
GGCCGGCCCTCAGAGGTGGTCAGGCTGTCACGAAGTTCTCATAGGCGCCT
GAAGGCCTCAAGCCACGCTTTCGCTTTCAAACTAAAGAAACGGCTTGGTG
AGGTGCGTAGGCAGTTGAGCTCTTGAGCAGTCGTGTACGTGATAGGCAGA
GCACCAGCCAAACCGATGCGGCCACATTGTACTCCAAGAATAACACCAGC
TCCGTGGACAAAGCCGCTCTGGCACGGTCAGTGGCTGGCATTGCAATGCA
CCACTGGTACTTCTTCAATCCTTCACTGCAGCACAAGCGCAGCGTACTTG
CCGGTGACGCCAGATTGCGCACTCCACTGTGGCGCCTTTGCCACTGCTGT
CTCAGCGGGCCAGCCATCGATGGTGGTGCTCAACGGCAGTCTGGACAAGG
TCAGGGGCGGGTACTACCCCAAGCTCGTCTACCCAGGGCTGCACGCTGCC
AAGGACAGATTCATTAAGGCAAGTACTCTGAAAACTGGCTGAGCGTAGGT
AGCGCCCGCTTTCACCTGCCAGCTTGCATGGGCGCTGTGAGCGCAGGCAT
TGCACGCGCACCGGAGCTCCTTTTTTTTCGTATCCCATGGAAATCCCCCC
CTCTTGAGCGGAGCTAATCAAAATACCCTGAAGTTTGAAAGCCCTAGAAA
TTTAGACGTCTTTGGTCTAAGCGCTTGATATCGGGGCAGTTAAAACCTGC
CTCAGGGATCTGCAATTCAATCATCGACAAGTCAGGGGTTGTACCTCCCA
GTCGACGGCAGTATTGCTGATTTACTGACGATGGTTGTGCTGGTCCGCTC
TGTCACAGAATTTTGAGCCAGTGTACTACTTGAAGGCCCTGCCAGAAGGC
TGGCTGTTCCGGCGGTACCCGGAAGACTGGCAGGTGAGCGCTGATGCCCT
GCCCTACCCCTAGGGTTGGACAAACCCTCAAAGAGCGCACACCCAACATG
ACGTTGCCAGCGGCTCGCGCGCATCGTTGCTGTCCACCGCTAGGGTTAGG
GTTACGCTGCTTGTGCACGCACTCATGCACATGGCCATACCGTGCTTCAT
GGCCCATTGCTGTCAACAGCCTGCTTGTTCGCACTTGTGGCATGTACTGT
CATGACAACAGCCTGCATATTGCACTCAAAAGCAGCTCAATTGTACGTTT
CGGCAGCAATGCCACCATCATGGAGAGCTCCCTTCACAGTTGCATTGCAC
AGCGTCTTTGACCTGCGCATTCCTGCTGCCCTCCTGTGTCTGGTGCAAAC
CTTTTTCTGACTCTGCAATAATGTCAATGACCGCTGCTGCTTTGGGTGGC
TTGCAGGTCATATACGCCGAGCGTGGCAGCGACCCAGTGGTAAGCTGCTC
ACATGATGAGCGTTTGTTCTTGTTGACAGAGCACAAAAGCATCATGTCTG
GCATTGTGGCCAACAGTGCCAACACTAGCAGACCATGTAGATAATCAACA
CATCACATTGAAGCTTGCACATCCCGAAAGCGCCGTGCACAGCACCAGTC
GTTTTGGATGCTCACGCCTGTGGGGTGACAGCAAATATGTGTTGATTTAT
TTGGCAGGTTTGGGCAACCCTAGTCGTATGGTGGATACGCCGTGCGCTGT
TGTCATTGTGTGCGCAGTGTCAACATCTACATATTTGTGCTGCTTTGATC
ATGTGCGCAGCTGCACACAACCTGTGTGACGTTGGAATTGGGGTGAGGAT
CACGTGCTTACGGGAGCATCATCATGCCCCAGTACGCTGTGCCTGCTTCA
CGGCGTGGGAATCAAGAGCACACAGACCAAAATTGCCTTGGTCCCTTTGC
AGCCACCACTGTGGACAATGAAGGTGATCTGACAGCTGTTGTGGGGACAC
CATTCTTGTGAATATCATCACAGTGCAATGGCAGTGGTACGCGGCTCGTG
AGTGCTGGCTCTGACCCTCGTGTGTATACGCACCATCGCTGCACATTGTT
GTGCTGGTGTATGCAGGTGCTGCAAACTTCGTCAACAAGGCCTGAGTACA
ATAATGCCGCAAAACTCATCAAGGTGAGTGCAGTAGTGTTGGAGCCAAGC
AAAGCCTACACCACTGTGATATTAAGCACGCTGAATGCACTTGAGGTCGG
GAACCTTGGTCTGACGGTAAGAGTAAATCTACATCAGGTTTGACGCATTC
AATCATCGGCTTGGTTCGATTAGTGCAAACCTCAGCATGGTGAGCATCGC
TGCCGGCGGTTCGATTGTTGCCCGAAGTTGATCAAAGAAATAGGAACGCA
CTACTGAGAATACGAAGGCCGTTTGATTCGGTGTCATTCTCATTGAGGTT
GCAAGTTGTCAATAACCTCGAGTTGGGGGGCAGTGCATCACTTACAAGTG
GCCGAAGGCTTGTGGCTCACTCACGTTACTAAAGTGTTGTCATATCATGC
CTCAAGATGCATGCTTCCGTGACCACTTTGATAGTGCTAGTATTTGGTGG
TGATGGACATCCTTTAAGCCGGCTGATGGCACTGGTATGTTTGCTCGGTG
ACGGACATGCATCATCCTTGGCAATGGCACACAGTGCAACGTGATCTGCG
CCTTTACCGGCATGAGCAGCTGCACCAGGTGAAAGCACTGCAGTGTGACA
TCTGCTGCAGAACTACGCAACAGCCTGCACACATTGCCAGCTGCACCCAA
GCGCCTCTTTTTTTTCTGCTTGGTCAATGCCAATCACCGCCGTCAGAGGC
ACCAAGAGGTGTCACACACGATGATCAGCTGCTGAATCACATCCGTGCGT
GTGGCGGATCGGGAATTGTTCTGATGTCAATTTTCCTCGAATGCACTTGA
TCGCCTCTGCAGGCGGCGGCACTGGAGCGGCAGATGATTCGGCGGCAGCT
ATAGCCGCGCTAGTGCAATGTGGCTTAGGTTCAACTTTAGTCCAGCAAAC
GATCACAACACCTGGGTGCTCGGTGGCTGTTGCTCTGCCGCATAGTTTCA
CTAGACATGGACGCTG
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Coding sequence (CDS) from alignment at Contig_13:722227..727542-

>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Trimin1|347568|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_13:722227..727542- (Tribonema minus UTEX_B_3156 )
ATGCAGGGGAAACTGGACATATCGTTGGGCGAGACTCTGGACGCAAATCG
CGGGTTTGCCAGGGAGCTCATGCGCGCTTTCTCTGCTAAAATGGGCAAAG
CGCTGTGGGCAGTGTTTGCCGACCCGGGCGAGGCCAAGCTGGCGGCGAAG
GCATTCACCGGGGGCGCCAGCGGCAGCCTGCCGTTTCGGGTCACCAGCAT
CAAGGAAGCACTAGGAAAACGGGCAGCTGCAGACGGCGGTTGCGACCTGC
AGCTGGTGGTGCAGCCTGGCTTCAACATCGATGAGTGGATACAGTTGGAC
ACTCTATATGCGGCCGGTGCAAAGGCCCGACAAGCTGCCGGGGCAGCGGG
CCAGCCATCGATGGTGGTGCTCAACGGCAGTCTGGACAAGGTCAGGGGCG
GGTACTACCCCAAGCTCGTCTACCCAGGGCTGCACGCTGCCAAGGACAGA
TTCATTAAGAATTTTGAGCCAGTGTACTACTTGAAGGCCCTGCCAGAAGG
CTGGCTGTTCCGGCGGTACCCGGAAGACTGGCAGGTCATATACGCCGAGC
GTGGCAGCGACCCAGTGGTGCTGCAAACTTCGTCAACAAGGCCTGAGTAC
AATAATGCCGCAAAACTCATCAAGGCGGCGGCACTGGAGCGGCAGATGAT
TCGGCGGCAGCTATAG
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