Trimin1|347541|estExt_Genemark1.C_Ctg_130025 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347541
Unique Name	Trimin1\|347541\|estExt_Genemark1.C_Ctg_130025
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	488

Homology

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BLAST of jgi.p|Trimin1|347541 vs. uniprot
Match: A0A836CKV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV8_9STRA)

HSP 1 Score: 920 bits (2377), Expect = 0.000e+0
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0

Query:    1 MPIVHGLPAAVVWPMCGYLHAHEILQLRVVSQGVLQCLSSKPADESIWKARCQQLAAGAHAGMVLASLIKPVHEPHFYVSAAVHFSSRTLFRQVALEPRQRLPLSPGTNASASGXXXXXXXXXXXVGAGASFLAAGMLEVPSACTDDGRVCEVVQAIGVVSLMPPLPDHAAAAHENAGAARLTLAYQALCRDYRDPMGPPVSSQEAGCEKFDKLPTPHSSAALSADAAAPPCDSAXXXXXXTADAPQRAAAARLARRVVGLYFAVYGPHGLELISVGWSRGSGGGALRGLKATGDVNVPAGRLTFESVGALSTPPFAVPPCTCGFECECFGPAEAGHITLLGKMDARARTAQTGFVSPTWNDATIVLFDAREEWAHYSASNPAAARMLEAPISARADSTRAPLRLPCARFAVEAPPALPSPKKTGITPVKDSGAPPRVQAARAAACPEALVAPTGCLESAPDCSVGILVIWRGEGFSTSMRFRPFCP 487
            MPIVHGLPAAVVWPMCGYLHAHEILQLRVVSQGVLQCLSSKPADESIWKARCQQLAAGAHAGMVLASLIKPVHEPHFYVSAAVHFSSRTLFRQVALEPRQRLPLSPGTNASASGXXXXXXXXXXXVGAGASFLAAGMLEVPSACTDDGRVCEVVQAIGVVSLMPPLPDHAAAAHENAGAARLTLAYQALCRDYRDPMGPPVSSQEAGCEKFDKLPTPHSSAALSADAAAPPCDSAXXXXXXTADAPQRAAAARLARRVVGLYFAVYGPHGLELISVGWSRGSGGGALRGLKATGDVNVPAGRLTFESVGALSTPPFAVPPCTCGFECECFGPAEAGHITLLGKMDARARTAQTGFVSPTWNDATIVLFDAREEWAHYSASNPAAARMLEAPISARADSTRAPLRLPCARFAVEAPPALPSPKKTGITPVKDSGAPPRVQAARAAACPEALVAPTGCLESAPDCSVGILVIWRGEGFSTSMRFRPFCP
Sbjct:    1 MPIVHGLPAAVVWPMCGYLHAHEILQLRVVSQGVLQCLSSKPADESIWKARCQQLAAGAHAGMVLASLIKPVHEPHFYVSAAVHFSSRTLFRQVALEPRQRLPLSPGTNASASGXXXXXXXXXXXVGAGASFLAAGMLEVPSACTDDGRVCEVVQAIGVVSLMPPLPDHAAAAHENAGAARLTLAYQALCRDYRDPMGPPVSSQEAGCEKFDKLPTPHSSAALSADAAAPPCDSAXXXXXXTADAPQRAAAARLARRVVGLYFAVYGPHGLELISVGWSRGSGGGALRGLKATGDVNVPAGRLTFESVGALSTPPFAVPPCTCGFECECFGPAEAGHITLLGKMDARARTAQTGFVSPTWNDATIVLFDAREEWAHYSASNPAAARMLEAPISARADSTRAPLRLPCARFAVEAPPALPSPKKTGITPVKDSGAPPRVQAARAAACPEALVAPTGCLESAPDCSVGILVIWRGEGFSTSMRFRPFCP 487

[Close]

BLAST of jgi.p|Trimin1|347541 vs. uniprot
Match: A0A835ZGA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA5_9STRA)

HSP 1 Score: 351 bits (900), Expect = 4.060e-112
Identity = 243/625 (38.88%), Postives = 292/625 (46.72%), Query Frame = 0

Query:    1 MPIVHGLPAAVVWPMCGYLHAHEILQLRVVSQGVLQCLSSKPADESIWKARCQQLAAG-------------------------------------------------------AHAGMVLASLIKPVHEPHFYVSAAVHFSSRTLFRQVALEPRQRLPLSPGTNASASGXXXXXXXXXXXVGAGASFLAAGMLEVPSACTDDGRVCEVVQAIGVVSLMP-PLPDHAAAAHENAGAARLTLAYQALCRDYRDPMGP------------PVSSQEAGCEKFDKLPTP--------------------------------HSSAA-----------------------LSADAAAPPCDSAXXXXXXTAD-------APQR--------AAAARLARRVVGLYFAVYGPHGLELISVGWSRGSGGGALRGLKATGDVNVPAGRLTFESVGALSTPPFAVPPCTCGFECECFGPAEAGHITLLGKMDARARTAQTGFVSPTWNDATIVLFDAREEWAHYSASNPAAARMLEAPISARADSTRAPLRLPCARFAVEAPPALPSPKKTGITPVKDSGAPPRVQAARAAACPEALVAPTGCLESAPDCSVGILVIWRGEGFSTSMRFRPFCP 487
            M ++  LPA V+WP C +L A +I+QL  VS  + Q LSS  AD  IW  R + LAA                                                        A  G+VLASLI+P+HEPHFY SAAVHF+SRT+FR +A   +QRLPL  G + +                    F+AA M+EVP   TDD R+CEVV AIGVV L+P P  D  +A HENA A RL LAYQA CR Y    G             PV   EAG EKF++LP P                                H SAA                       ++    AP  D+A       A         PQ          A + LAR V GL+FA+YGPHG+E++SV    G     L+GLKATGD NVP+GRLTF S G L  PPFA PPC+CGFECECF   E  H+TLLGKM+A+ARTAQTGF++ TWN+ATIVLFDAREEW HYS   PA AR+LE+PI                                                        A+ APTGC  S   C++G+LV W G+GF TSMRFRPFCP
Sbjct:    1 MHVLECLPAPVLWPACAFLDADDIVQLSAVSPSLHQGLSSAAADGQIWSRRTRSLAASYDVSLFSTLACWDTPSTWTGLTTFRELYFWARRVLPLLGLWRWDKGMHGGVLVLRAQGGVVLASLIRPIHEPHFYTSAAVHFTSRTIFRLLA---KQRLPLPSGKSGT--------------------FVAASMVEVPGKGTDDNRLCEVVSAIGVVQLLPSPAADATSAPHENACAERLVLAYQASCRGYSYSDGSYADGSAQAGATAPVIMPEAGREKFERLPAPCALPFLLSATCGAALAGRFGQWPAPPPLVGFGHQSAAALLGPDQXXXXXXXXXXXXXXXXIAVAGDAPHDDAAAAAMPLVARNVLIGRALPQHNQRGGVMELARSPLARHVPGLFFAIYGPHGIEMVSVRLEDGM----LKGLKATGDGNVPSGRLTFRSAGPLQVPPFATPPCSCGFECECFTSNELRHVTLLGKMEAQARTAQTGFINDTWNNATIVLFDAREEWMHYSTREPAVARVLESPI-------------------------------------------------------RAVAAPTGCASSIATCAIGLLVTWCGDGFRTSMRFRPFCP 543

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347541 vs. uniprot

BLAST of jgi.p|Trimin1|347541 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CKV8_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZGA5_9STRA	4.060e-112	38.88	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF12014	Cyclin_D1_bind	coord: 259..371 e-value: 3.2E-8 score: 34.1

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_13	contig	Contig_13:176883..181932 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347541	mRNA_5764	Tribonema minus UTEX_B_3156	mRNA	Contig_13 176883..189238 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347541|estExt_Genemark1.C_Ctg_130025 ID=Trimin1|347541|estExt_Genemark1.C_Ctg_130025|Name=jgi.p|Trimin1|347541|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=488bp
MPIVHGLPAAVVWPMCGYLHAHEILQLRVVSQGVLQCLSSKPADESIWKA
RCQQLAAGAHAGMVLASLIKPVHEPHFYVSAAVHFSSRTLFRQVALEPRQ
RLPLSPGTNASASGGSGGSSAAAAAVGAGASFLAAGMLEVPSACTDDGRV
CEVVQAIGVVSLMPPLPDHAAAAHENAGAARLTLAYQALCRDYRDPMGPP
VSSQEAGCEKFDKLPTPHSSAALSADAAAPPCDSAAVPTCATADAPQRAA
AARLARRVVGLYFAVYGPHGLELISVGWSRGSGGGALRGLKATGDVNVPA
GRLTFESVGALSTPPFAVPPCTCGFECECFGPAEAGHITLLGKMDARART
AQTGFVSPTWNDATIVLFDAREEWAHYSASNPAAARMLEAPISARADSTR
APLRLPCARFAVEAPPALPSPKKTGITPVKDSGAPPRVQAARAAACPEAL
VAPTGCLESAPDCSVGILVIWRGEGFSTSMRFRPFCP*