Trimin1|352721|estExt_Genemark1.C_Ctg_1290036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352721
Unique NameTrimin1|352721|estExt_Genemark1.C_Ctg_1290036
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length248
Homology
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BLAST of jgi.p|Trimin1|352721 vs. uniprot
Match: A0A836CL15_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL15_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.180e-78
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 
Query:    1 MRHGEEDTVKQXXXXXXXXXXXXXXXKPASLKAATGGKVVGTRGRVLADKRTRDRVGADPTSVRQVWDKWLEKLQQXXXXXXXXXXXXXXXXXXXXXXXXXXAKQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLPEPAPLAPRSEXXXXXXXXXXXXXXXXXXXXXXXXPRPQAVEQPRPLAVSTGAAAVGLVGALGAXXXXXXXXXXXXXMQGDGWVCPQCTLLNGAVVLVCECCLAERPPHM 247
            MRHGEEDTVKQXXXXXXXXXXXXXXXKPASLKAATGGKVVGTRGRVLADKRTRDRVGADPTSVRQVWDKWLEKLQQXXXXXXXXXXXXXXXXXXXXXXXXXXAKQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLPEPAPLAPRSEXXXXXXXXXXXXXXXXXXXXXXXXPRPQAVEQPRPLAVSTGAAAVGLVGALGAXXXXXXXXXXXXXMQGDGWVCPQCTLLNGAVVLVCECCLAERPPHM
Sbjct:    1 MRHGEEDTVKQXXXXXXXXXXXXXXXKPASLKAATGGKVVGTRGRVLADKRTRDRVGADPTSVRQVWDKWLEKLQQXXXXXXXXXXXXXXXXXXXXXXXXXXAKQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLPEPAPLAPRSEXXXXXXXXXXXXXXXXXXXXXXXXPRPQAVEQPRPLAVSTGAAAVGLVGALGAXXXXXXXXXXXXXMQGDGWVCPQCTLLNGAVVLVCECCLAERPPHM 247
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352721 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CL15_9STRA4.180e-78100.00RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.380coord: 213..247
e-value: 7.1E-8
score: 34.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..185
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 220..239
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 215..245
score: 8.196648
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 217..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:258025..259550 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352721mRNA_9855Tribonema minus UTEX_B_3156 mRNAContig_129 258025..259550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352721|estExt_Genemark1.C_Ctg_1290036 ID=Trimin1|352721|estExt_Genemark1.C_Ctg_1290036|Name=jgi.p|Trimin1|352721|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MRHGEEDTVKQEDGGGGSAGGGGGRRKPASLKAATGGKVVGTRGRVLADK
RTRDRVGADPTSVRQVWDKWLEKLQQQQEQPEPDENDSDDETEGDDTDDA
DNAKQPPPKKPRQQQQQPAPRAAAQQQQQQRQQQRPLPEPAPLAPRSEQP
PPRAASAPLQQPPQAARTQQQQPRPQAVEQPRPLAVSTGAAAVGLVGALG
AAAAGGGGGGGGGGMQGDGWVCPQCTLLNGAVVLVCECCLAERPPHM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf