Trimin1|352719|estExt_Genemark1.C_Ctg_1290032 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352719
Unique NameTrimin1|352719|estExt_Genemark1.C_Ctg_1290032
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length238
Homology
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A835ZB18_9STRA (PX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB18_9STRA)

HSP 1 Score: 447 bits (1150), Expect = 1.900e-158
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF 237
            MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF
Sbjct:    1 MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF 237          
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A6U1LL59_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LL59_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.130e-20
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
Query:  139 FAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVE 228
            +   RRF++FD LD  ++SAF       HHL +N+P LP K+ K + DH   +F+EQRR DL+AYLK LV +PH S NPD+  FLGI +E
Sbjct:   18 YVVTRRFSDFDRLDNHIKSAFW-----RHHLRSNLPCLPAKKIKYVIDHSQTDFVEQRRLDLEAYLKRLVQVPHASSNPDLHQFLGIPIE 102          
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A7S2XAZ5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAZ5_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-11
Identity = 53/204 (25.98%), Postives = 91/204 (44.61%), Query Frame = 0
Query:   35 VVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQA---------VMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEA 229
            VVQ RH+  +G + L+++G+ I +S  ++D  + + F I      V++      T   +C+ Q          +M +                     +  ++ V     G+     +RF +F   D  +R  F+G     HHL  N+P LP K+  L T+H++ EF+E+RR  L+ Y+  L  IP    NPD + F   + +A
Sbjct:   29 VVQLRHNNVSGRRILLLDGKEIWQSMKVMDVAENVHFEINGKQGVVKI-GVDYFTYTYLCLYQGRPMPEMTFDIMDYKEQGYQCKIPVVNVEI-VKGKKVAVFRVEMTHQGQTEVFRKRFRDFATFDDYLRGGFEG-----HHLLQNLPKLPPKQFTLFTNHFSKEFLEERRRGLEEYVNKLCRIPKAVANPDFVAFFTKKNKA 225          
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A6U1MRC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRC3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.710e-10
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  143 RRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGI 225
            RRF +F   DA +++A KG     +HL +++PPLP K  KLL DH   EF+EQRR +L+ YL+ L+ +P  +    +  FLGI
Sbjct:   33 RRFRDFARFDAEMQAALKG-----NHLCSSLPPLPEKHVKLLLDHEDPEFVEQRRSELEDYLRRLLNMPFVTGMYQVHSFLGI 110          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZB18_9STRA1.900e-158100.00PX domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6U1LL59_9STRA1.130e-2050.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XAZ5_9EUKA2.800e-1125.98Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6U1MRC3_9STRA6.710e-1043.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001683Phox homologySMARTSM00312PX_2coord: 105..226
e-value: 9.7E-5
score: 31.8
IPR001683Phox homologyPFAMPF00787PXcoord: 138..223
e-value: 1.2E-9
score: 38.7
IPR001683Phox homologyPROSITEPS50195PXcoord: 106..230
score: 13.181227
IPR036871PX domain superfamilyGENE3D3.30.1520.10coord: 110..234
e-value: 1.6E-15
score: 58.8
IPR036871PX domain superfamilySUPERFAMILY64268PX domaincoord: 122..226
NoneNo IPR availableCDDcd06093PX_domaincoord: 123..223
e-value: 7.90352E-14
score: 63.5307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:249618..251691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352719mRNA_9851Tribonema minus UTEX_B_3156 mRNAContig_129 249618..251691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352719|estExt_Genemark1.C_Ctg_1290032 ID=Trimin1|352719|estExt_Genemark1.C_Ctg_1290032|Name=jgi.p|Trimin1|352719|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=238bp
MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLI
VNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVM
QHAAGGSGGAASRGGGSASASDNRTVLYEVVSQLGGREFAALRRFAEFDE
LDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDL
DAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001683PX_dom
IPR036871PX_dom_sf