mRNA_9858 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175673
Unique NamemRNA_9858
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A835ZCD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD4_9STRA)

HSP 1 Score: 231 bits (588), Expect = 4.570e-77
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 MINAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            MINAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR
Sbjct:    1 MINAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 106
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BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A2D4CCM8_PYTIN (Myb-like DNA-binding protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCM8_PYTIN)

HSP 1 Score: 164 bits (416), Expect = 7.050e-48
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    7 NAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            +  C     ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:  115 DTNCKRPWTREENEKLVQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPNVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 218
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A1V9ZY42_9STRA (Myb-like DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY42_9STRA)

HSP 1 Score: 164 bits (414), Expect = 6.980e-47
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:  107 REENEKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPAVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 201
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A1V9Z4Y9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4Y9_9STRA)

HSP 1 Score: 164 bits (414), Expect = 7.270e-47
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:  112 REENEKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPAVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 206
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A2P4Y2W3_9STRA (R2R3 Myb protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2W3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.020e-46
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E++KL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:   54 REENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPLVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 148
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BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: T0QU24_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QU24_SAPDV)

HSP 1 Score: 164 bits (414), Expect = 1.030e-46
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:  114 REENEKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPAVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 208
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A5D6XWB8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWB8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.520e-46
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEIAK+LPGRTDNAIKNRYYSTMRR
Sbjct:  116 REENEKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTTEEDYVIFECHKNVGNQWAEIAKMLPGRTDNAIKNRYYSTMRR 210
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A8K1FNJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNJ7_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 2.330e-46
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    7 NAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++ C     ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:   86 DSNCKRPWTREENEKLIQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPNVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 189
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A397B822_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B822_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.750e-46
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   43 DEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            +EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:   91 NEKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPAVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 182
[Close]
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Match: A0A3M6VLP0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLP0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.760e-46
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   34 QDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWHNHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRYYSTMRR 318
            ++E+EKL  LVK+YGAKRWS+IA  LPGR+GK CRERWHNHLNP VRKDAW  EED  IF+ HK +GNQWAEI+K+LPGRTDNAIKNRYYSTMRR
Sbjct:   92 REENEKLIQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRR 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCD4_9STRA4.570e-77100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4CCM8_PYTIN7.050e-4871.15Myb-like DNA-binding protein, putative n=1 Tax=Pyt... [more]
A0A1V9ZY42_9STRA6.980e-4776.84Myb-like DNA-binding protein n=1 Tax=Thraustotheca... [more]
A0A1V9Z4Y9_9STRA7.270e-4776.84Myb-like DNA-binding protein n=1 Tax=Achlya hypogy... [more]
A0A2P4Y2W3_9STRA1.020e-4675.79R2R3 Myb protein (Fragment) n=1 Tax=Phytophthora p... [more]
T0QU24_SAPDV1.030e-4676.84Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5D6XWB8_9STRA1.520e-4677.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FNJ7_PYTOL2.330e-4671.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397B822_9STRA2.750e-4678.26Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3M6VLP0_9STRA2.760e-4676.84Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:265993..266445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175673|e_gw1.129.122.1
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MC83@121069|Pythiales
Evalue6.72e-48
Seed ortholog36331.EPrPI00000014895
Hectar predicted targeting categoryother localisation
TranscriptId175995
TrackFilteredModels1
ProteinId175673
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175673gene_9858Tribonema minus UTEX_B_3156 geneContig_129 265993..266445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175673Trimin1|175673|e_gw1.129.122.1Tribonema minus UTEX_B_3156 polypeptideContig_129 265993..266445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9858_2exon_9858_2Tribonema minus UTEX_B_3156 exonContig_129 265993..266178 -
exon_9858_1exon_9858_1Tribonema minus UTEX_B_3156 exonContig_129 266314..266445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9858CDS_9858Tribonema minus UTEX_B_3156 CDSContig_129 266314..266445 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Trimin1|175673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_129:265993..266445- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAATGCCGGCTGCCTGTGCTTGTTGCTTCAGGACGAGGATGAGAA
ACTGTGTCATCTGGTCAAGGAATACGGCGCTAAGCGCTGGAGCATCATCG
CTGGCCGCCTGCCGGGTCGCATCGGTAAGAGCTGCCGCGAGCGATGGCAC
AACCATCTGAACCCCGAAGTCCGCAAGGATGCGTGGCGCCCAGAGGAAGA
TCTCACCATCTTCAAGCACCACAAGGAGCTGGGCAACCAGTGGGCGGAGA
TCGCCAAGCTGCTGCCGGGTCGCACCGACAACGCCATCAAGAACCGCTAC
TACTCCACCATGCGCAGG
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protein sequence of jgi.p|Trimin1|175673

>Trimin1|175673|e_gw1.129.122.1 ID=Trimin1|175673|e_gw1.129.122.1|Name=jgi.p|Trimin1|175673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
MINAGCLCLLLQDEDEKLCHLVKEYGAKRWSIIAGRLPGRIGKSCRERWH
NHLNPEVRKDAWRPEEDLTIFKHHKELGNQWAEIAKLLPGRTDNAIKNRY
YSTMRR
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mRNA from alignment at Contig_129:265993..266445-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Trimin1|175673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_129:265993..266445- (Tribonema minus UTEX_B_3156 )
ATGATAAATGCCGGCTGCCTGTGCTTGTTGCTTCAGGACGAGGATGAGAA
ACTGTGTCATCTGGTCAAGGAATACGGCGCTAAGCGCTGGAGCATCATCG
CTGGCCGCCTGCCGGGTCGCATCGGTAAGAGCGTTTACCCGCCACCTCGA
TCACCACTCAAAACCCGCTTGCGCCACCAACGGCGCGGATTCGTGCTTTT
TGTATGCTTGCGACTTGTTCACATCATGTACCTGTTCGCTGCCATGCCGC
CCACTGCAGGCAAACAGTGCCGCGAGCGATGGCACAACCATCTGAACCCC
GAAGTCCGCAAGGATGCGTGGCGCCCAGAGGAAGATCTCACCATCTTCAA
GCACCACAAGGAGCTGGGCAACCAGTGGGCGGAGATCGCCAAGCTGCTGC
CGGGTCGCACCGACAACGCCATCAAGAACCGCTACTACTCCACCATGCGC
AGG
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Coding sequence (CDS) from alignment at Contig_129:265993..266445-

>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Trimin1|175673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_129:265993..266445- (Tribonema minus UTEX_B_3156 )
ATGATAAATGCCGGCTGCCTGTGCTTGTTGCTTCAGGACGAGGATGAGAA
ACTGTGTCATCTGGTCAAGGAATACGGCGCTAAGCGCTGGAGCATCATCG
CTGGCCGCCTGCCGGGTCGCATCGGTAAGAGCTGCCGCGAGCGATGGCAC
AACCATCTGAACCCCGAAGTCCGCAAGGATGCGTGGCGCCCAGAGGAAGA
TCTCACCATCTTCAAGCACCACAAGGAGCTGGGCAACCAGTGGGCGGAGA
TCGCCAAGCTGCTGCCGGGTCGCACCGACAACGCCATCAAGAACCGCTAC
TACTCCACCATGCGCAGG
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