mRNA_9895 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151359
Unique NamemRNA_9895
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151359 vs. uniprot
Match: A0A835ZH79_9STRA (PH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH79_9STRA)

HSP 1 Score: 231 bits (588), Expect = 6.150e-77
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG 330
            PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG
Sbjct:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG 110
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BLAST of jgi.p|Trimin1|151359 vs. uniprot
Match: D7FUR5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 8.710e-33
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG 330
            PI +CGWL KMKR  RKFRSTW RRWFTV+DG   WY + ++ ++ G + L  I+SV R+     GS++FVV+++DR MLLRA++  D SRWIRG+TLQ DL+ GGT QG
Sbjct:   31 PIIICGWLLKMKREHRKFRSTWNRRWFTVEDGAFNWYKTSSS-DACGRLSLLDIQSVRRYVGTEHGSYTFVVHATDREMLLRADSANDESRWIRGLTLQTDLVHGGTFQG 139
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BLAST of jgi.p|Trimin1|151359 vs. uniprot
Match: A0A7S2HE46_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE46_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.800e-31
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG 330
            PI + GWL K+KR QR F STW RRWFT+QDG L WY+   +   SGSI L     V  FE G QG FSF++ +SDRN+ LRAE+   L  W  G+ LQ+DL  GGT  G
Sbjct:    9 PIVMRGWLLKLKRNQRLFMSTWNRRWFTIQDGRLNWYSGKRSKNPSGSIDLEQFTDVEPFEIGGQGCFSFIIRTSDRNLFLRAESAQKLKYWKTGLQLQMDLFAGGTRLG 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151359 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZH79_9STRA6.150e-77100.00PH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D7FUR5_ECTSI8.710e-3356.36PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S2HE46_9STRA8.800e-3152.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:417839..418168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151359|gw1.129.89.1
DescriptionPH domain
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGs2BP2Z@1|root,2S1QW@2759|Eukaryota,3QDSV@4776|Peronosporales
Evalue2.81e-22
Seed ortholog325452.fgenesh_scip_prom.46568.4208
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-19_004210.1
TranscriptId151681
TrackFilteredModels1
ProteinId151359
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151359gene_9895Tribonema minus UTEX_B_3156 geneContig_129 417839..418168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9895_1exon_9895_1Tribonema minus UTEX_B_3156 exonContig_129 417839..418168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9895CDS_9895Tribonema minus UTEX_B_3156 CDSContig_129 417839..418168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151359Trimin1|151359|gw1.129.89.1Tribonema minus UTEX_B_3156 polypeptideContig_129 417839..418168 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Trimin1|151359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_129:417839..418168- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCATCTACCTGTGCGGGTGGCTGCACAAGATGAAGAGGACTCAGAGGAA
ATTTCGCAGCACCTGGGCAAGGCGGTGGTTCACAGTGCAGGACGGGTGCT
TGCTGTGGTATACGTCGCCCAACACGGTAGAATCTAGCGGGTCCATCCGC
TTGCATGCCATCAAGAGCGTCAGCAGGTTCGAAGCAGGATGCCAGGGCAG
CTTCAGCTTCGTGGTCAACAGCAGCGACAGAAACATGCTGCTGAGGGCGG
AGACGCACGCGGACCTGAGCCGGTGGATCAGGGGCATCACGCTGCAGCTG
GACCTGCTGCGCGGCGGCACCATACAGGGG
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protein sequence of jgi.p|Trimin1|151359

>Trimin1|151359|gw1.129.89.1 ID=Trimin1|151359|gw1.129.89.1|Name=jgi.p|Trimin1|151359|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIR
LHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQL
DLLRGGTIQG
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mRNA from alignment at Contig_129:417839..418168-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Trimin1|151359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_129:417839..418168- (Tribonema minus UTEX_B_3156 )
CCCATCTACCTGTGCGGGTGGCTGCACAAGATGAAGAGGACTCAGAGGAA
ATTTCGCAGCACCTGGGCAAGGCGGTGGTTCACAGTGCAGGACGGGTGCT
TGCTGTGGTATACGTCGCCCAACACGGTAGAATCTAGCGGGTCCATCCGC
TTGCATGCCATCAAGAGCGTCAGCAGGTTCGAAGCAGGATGCCAGGGCAG
CTTCAGCTTCGTGGTCAACAGCAGCGACAGAAACATGCTGCTGAGGGCGG
AGACGCACGCGGACCTGAGCCGGTGGATCAGGGGCATCACGCTGCAGCTG
GACCTGCTGCGCGGCGGCACCATACAGGGG
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Coding sequence (CDS) from alignment at Contig_129:417839..418168-

>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Trimin1|151359|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_129:417839..418168- (Tribonema minus UTEX_B_3156 )
CCCATCTACCTGTGCGGGTGGCTGCACAAGATGAAGAGGACTCAGAGGAA
ATTTCGCAGCACCTGGGCAAGGCGGTGGTTCACAGTGCAGGACGGGTGCT
TGCTGTGGTATACGTCGCCCAACACGGTAGAATCTAGCGGGTCCATCCGC
TTGCATGCCATCAAGAGCGTCAGCAGGTTCGAAGCAGGATGCCAGGGCAG
CTTCAGCTTCGTGGTCAACAGCAGCGACAGAAACATGCTGCTGAGGGCGG
AGACGCACGCGGACCTGAGCCGGTGGATCAGGGGCATCACGCTGCAGCTG
GACCTGCTGCGCGGCGGCACCATACAGGGG
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