mRNA_14838 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175579
Unique NamemRNA_14838
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175579 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:20170..21897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175579|e_gw1.127.71.1
Hectar predicted targeting categoryother localisation
TranscriptId175901
TrackFilteredModels1
ProteinId175579
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175579gene_14838Tribonema minus UTEX_B_3156 geneContig_127 20170..21897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175579Trimin1|175579|e_gw1.127.71.1Tribonema minus UTEX_B_3156 polypeptideContig_127 20170..21897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14838_2exon_14838_2Tribonema minus UTEX_B_3156 exonContig_127 20170..20364 -
exon_14838_1exon_14838_1Tribonema minus UTEX_B_3156 exonContig_127 21715..21897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14838CDS_14838Tribonema minus UTEX_B_3156 CDSContig_127 21715..21897 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG
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protein sequence of jgi.p|Trimin1|175579

>Trimin1|175579|e_gw1.127.71.1 ID=Trimin1|175579|e_gw1.127.71.1|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
QPTQTPTGLPTATPTGKPTRRPTRTPTAIPTPEPTRNPTAEPTGQPSLSP
TAEPTALPTAEPTGTPTTQPTGTPTLQPTGTPTAKPTRKPTTSKPAQQPT
ATPTAMPTAEPTTSQVQSTFDAWGA*
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mRNA from alignment at Contig_127:20170..21897-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1728bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGGTAGGACTCGTTGCGAT
AACAATGCATACTCTAGTGACTAGACAAAAAGTTTATGCAGCGGTAGGGC
TAGAGGTAGCTTTGGGTCATGGACAGGATTAGGCCTGGGATTCGGTCGCA
TCACTGCAGCATGTGAATCGTGCGATCCTCTGTGATGCCAGATTGCAGCT
GCGCAGCCGCAAGTGTTGAAATAATGTTATGGGTCTTGACAAGTATCCTT
GAACTACGCTGCTCTCTACTTCAAGTGTGACGCGGGAGTGGAGGCGCAGC
ATGTGCACTTAGCTGTCAGGGGATGCACAGCGGTGCTGCTCTTCGTGAGC
GCTGTTGCTGTGTACTTCAGAGGCAAGCAGTGTCGTAGATAATTGAAGCT
CGGACATCAACTTCAAGTTGTCGACTTTGTAAAGATTCAGCACTAGCGTT
CGCCTTAGAGCCACCTGATGTTCACATGCCGTGAGCCTCGCTGCTGATGT
GGCGATACTCTAAACAGTCTCGCTCTGTCAATGGTTGAGGATAACGCTAG
GGTTACTAGTTGAGGTTTGCAGCATGCACCCTGCTTCTGTGCAGCCAATG
CCAATTATTTTCAAGGGCGATGCTGTAGGTTGTGTCCGGTACGTTGCCTA
CAGGCTACAAATTTGTGAAGTGAGCTGCTGAAAAGCGCTTCTCAGCAGGA
CCGTACAAGTACCTCAAAGATGGTACTACATAATTAGACGAAGGTCCAGA
TTCTGTTGTTTGCGCACAAGTCCTGCAACCAGCTTGCTTGAAACATGCTG
GTGTGAGCTTCAGTTGTTGATGGCAAATTTCCTAACCCTAACCCTATCAA
AGGTGAGAGTGTCAATCGCATTGGCCCACATGACCCCTCAGCAGGCAGGG
TCCGTTTTCAGCACATTGCCTGCATGGATGTACATACATTTGCTCACGTC
AGCTGGGCCCCAGAGCCTTCATCAGTTATCAGTGCCGATGCACGCTGGTG
CTGACGACGGCGCATAGCAGTCACCAATCACATCACTCCTGTTTTGTATT
CGTTCGAACGTGAACATTGCAACGATGTCTGACTCGACTACTCAGCACCA
TGGCACCCACTGTGTTGAGCCCTGTGCAAACAGTCCATTGGCAAACTATT
CCGGAGTCTGCAACACGAGTTAATTTTGCCAGCTGATGCTTGTACATCAC
AACACATACTTGACAAAGTTTTCTTTTCATCCCCTTGTTGTTGCTTACAA
TACGTACCGCTCCGCTATCATCACCGCTGCCACTGGTGCAGCCGGCCGGC
ACCCCCTTGACGACACTTTCCTTCTTCTTTTCGTTGTTGTTTACACACAT
ACCACACCGCCATCGCCACTGGCAATGCCGCAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG
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Coding sequence (CDS) from alignment at Contig_127:20170..21897-

>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG
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