Homology
BLAST of jgi.p|Trimin1|175564 vs. uniprot
Match:
A0A836CMA4_9STRA (Tfp pilus assembly protein PilF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMA4_9STRA)
HSP 1 Score: 205 bits (521), Expect = 8.330e-51
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1
Query: 1 MALLSAELPNVRRLLAYIDSEDGACHLRDESWAAKLVELAYELQDRSVLREAELLFWHALDITDGLQVVGAQHASNATTLNGLAGLLXXXXXXXXXXXMYRRALAIREETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTDTLAASLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQHPDTAVSLN 627
MALLSAELPNVRRLLAYIDSEDGACHLRDESWAAKLVELAYELQDRSVLREAELLFWHALDITDGLQVVGAQHASNATTLNGLAGLLXXXXXXXXXXXMYRRALAIREETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTDTLAASLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQHPDTAVSLN
Sbjct: 1 MALLSAELPNVRRLLAYIDSEDGACHLRDESWAAKLVELAYELQDRSVLREAELLFWHALDITDGLQVVGAQHASNATTLNGLAGLLXXXXXXXXXXXMYRRALAIREETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTDTLAASLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQHPDTAVSLN 209
BLAST of jgi.p|Trimin1|175564 vs. uniprot
Match:
A0A836C983_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C983_9STRA)
HSP 1 Score: 68.2 bits (165), Expect = 7.480e-8
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 MALLSAELPNVRRLLAYIDSEDGACHLRDESWAAKLVELAYELQDRSVLREAELLFWHALDITDGLQVVGAQHASNATTLNGLA 252
MALLSAELPN+RRLL ++D+E + ESWA KL L EL+ SVL E E LF AL + + + + A+H + AT LN LA
Sbjct: 579 MALLSAELPNIRRLLMFLDNEAS---WQGESWAIKLANLGDELRALSVLMETEALFRRALALEE--RALDARHPAMATLLNKLA 657
BLAST of jgi.p|Trimin1|175564 vs. uniprot
Match:
A0A835YTN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN6_9STRA)
HSP 1 Score: 59.7 bits (143), Expect = 1.220e-5
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 52 IDSEDGACHLRDESWAAKLVELAYELQDRSVLREAELLFWHALDITDGLQVVGAQHASNATTLNGLAGL 258
+DSE+ +DESWA+K +L YEL RSVLREAE L AL I QV+G +H AT+LN LA L
Sbjct: 1 MDSEES---WQDESWASKCSKLGYELNARSVLREAESLHRRALAIRQ--QVLGTEHLDTATSLNNLASL 64
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175564 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 8.33e-51 / Id = 100.00 Expect = 7.48e-8 / Id = 50.00 Expect = 1.22e-5 / Id = 52.17 Sequence A0A836CMA4_9STRA A0A836C983_9STRA A0A835YTN6_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|175564|e_gw1.127.28.1 Hectar predicted targeting category other localisation TranscriptId 175886 Track FilteredModels1 ProteinId 175564
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_14866 ID=mRNA_14866|Name=jgi.p|Trimin1|175564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2919bp|location=Sequence derived from alignment at Contig_127:298445..301363- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTTATTGTCAGCAGAGCTGCCCAACGTCAGGAGGCTGTTGGCTTA back to top protein sequence of jgi.p|Trimin1|175564
>Trimin1|175564|e_gw1.127.28.1 ID=Trimin1|175564|e_gw1.127.28.1|Name=jgi.p|Trimin1|175564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=973bp
MALLSAELPNVRRLLAYIDSEDGACHLRDESWAAKLVELAYELQDRSVLR back to top mRNA from alignment at Contig_127:298445..301363-
Legend: exon polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14866 ID=mRNA_14866|Name=jgi.p|Trimin1|175564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2919bp|location=Sequence derived from alignment at Contig_127:298445..301363- (Tribonema minus UTEX_B_3156 )ATGGCGTTATTGTCAGCAGAGCTGCCCAACGTCAGGAGGCTGTTGGCTTA
CATTGACTCAGAGGATGGAGCATGCCACTTGCGAGACGAAAGTTGGGCAG
CCAAGCTTGTAGAGCTCGCCTACGAGTTGCAAGATCGGAGTGTGCTGCGG
GAGGCAGAGTTGCTGTTTTGGCATGCACTTGATATTACGGACGGGTTGCA
GGTTGTTGGCGCCCAGCATGCATCGAACGCGACAACGCTCAACGGCCTCG
CTGGGCTGCTGCAAGATCAGGGCAAGCTTGCTCAGGCAGAGCTCATGTAC
CGGCGCGCCCTGGCCATCAGGGAAGAGACCCTCGGCGCCGAGCATCCAAC
CACAATTACATCACTCAACAACCTTGCCGTGGTGTTGAACACTCAGGGCA
AGCTGGCAGAGGCAGAGCTGCTGTACCAGTGTGCACTAGCCAACTTTCAG
AAGGCATTTGGTGCCGAACTCACCGACACACTGGCAGCATCACTACTCAG
CAACTTTGCTGAGCTACTTGCAGCTCAAGGCAAGCAAGCTGAGGCGGAAC
CGTTGCACCGCCGTGCGCTGGCCGCCAGAGTGGAGGCACTTGGATTTCAG
CATCCCGACACGGCAGTATCACTCAACAATCTGGCCGGGCTGCTGCTGGC
TCAGGGCAAGCTGGCAGAAGCGGAACCGCTCTTTCAGCGTGCGCTAGGCA
TCAGGGAGGAGGTCCTCGGCGCCAATCATCCTCACACGGCAGTGTTGCTC
AACAATCTTGCAGAGCTGCGACAAGAGCAGGGCTGGCTGGTGGAGGCGGA
TGTGCTGCACCGGCGCGCTCTGGCAATCAGAGAGAAAGCACTTGGCATGC
AGCATCCCGACACGGCGTCATCGCTCAGCAGCATCGCCACGCTTCTTCGA
GCACAGGGTCACCTAACAGATTCGGAGCTGCTGCACCGGCGCGCGCTTGC
CGTCAGGGAGGAGGTGCTTGGCGCCAAGCATCTCGACACGGCAACATCGC
TCAACAACCTCACCTTGGTGTTAAATGAGCAGGGCGAGCTGGCAGACGCA
GAGCCGTTGTACCAGCGTGCGCTAGCCATCCTCCAGGAGGTGCTCGGTGC
TGAACATCCTGATACAGCATCGGTGCTGAGCAACCTTGCAGTACTGCTGA
AGGATCAGGGCAAGTTGGTGGATGCAGAACCGCTGCAGCGACATGCGCTG
GCCATCCACGAAAAGGCACTTGGTGCCAACCATCCTGGTACGGCGATGTC
ACTCAGCAACCTCGCTGTCTTACTGCATGATCGCAGCAGTTTGGCAGAGG
CAGAGCTGCTGCATCGTCGTGCTCTGGCCATCAGGGAGGAGGTGTACGGC
TTCAGCCATCCGCGCACAGCAACGTCGCTTGTCAACCTCGCTGCCGTGCT
GCATGATCAAGGCAGGCAAGCAGACGCAGAGCCGCTATATCGCCGTGGTC
TGGCCATCAGGGAGCAGGCACTGGGCGCTAAGCATCCTGATACGGCATCT
TCACTCAACAGCCTTGCCGAGCTGCTGCGAGCTCAGTACAAGCTGGTAGA
GGCGGAGTCGCTGTACCGGCGCGCACTGGCCATCAGGGAGGAGGCGTGCG
GCGCCAAGCATCCCAACACGGCAGAATCGCTCAGCAACTTCGCCATGCTG
CTGCAAGAGCAGGGCAAGCTAGCAGAGGCAGCGCCGCTGTACCGGCGCGC
GCTGGCCATCAGGGAGGAGGCGCGCGGGGCCAAGCATCCCGACACGGCAG
AATCGCTCAGCAACTTCGCCGTGCTGCTGCAAGAGCAGGGCAAGCTAGCA
GAGGCAGAGCTGCTGTACCAACGCGCACTGGCCATCAGGGAGGAGGCGTT
CGGCGCCGAGCACAACGACACGGCAACATCGCTCAACAACCTTGCCAGCC
TGCTACGAGCCCAGGGCAAGCTTGCAGAGGCAGAGCCGCTGTACCGGCGC
ACACTGGCCATCAGGGAGAAGGCACTTGGCGCATGGCACACTGACACAGC
GACTTCGCTGAACAACCTCGCCATGTTGCTGGAAACTCAGGACAAGCTGG
CAGAGGCAGAACCGCTGTACCAGCGTGCACTGGCCATCATCGAGGAGGCA
TATGGCGCCAAGCATCCATCAACAGCGACAGTGCTCGGCAATCTTGCGAT
CCTGCGGCAAAATCAGGGCAAGCTGGCTGAGGCAGAGCTGCTGCACCAGC
GTGCACTGGCCATTGCAGAGGAAGCACTTGGCGCTGAGCATCCTGACACT
GCGCGGTCACTCAACAACCTAGCTGTGCTGCTGCTTTCTCAGGACAAGCT
TGCCGAGGCAGAACCCTTGTGCTGGCGCGCGCTGGCCATCAAGGAGCAGA
GACTTGGTGTGTCGCATCCGTCCACGGCAGCATCGCTCAGCACCCTGGCC
TCGCTGCTTCAAAATCAGGGCAAGTTGGCGGAGGCGGAGCCGCTGTGCAG
GCGCGCTCTGGCCATCAGGGAGGAGGCACTCGGCGCCGAGCATCACGACA
CTGCTACATCGCTCAACAATCTCGCCAGCCTTCTGCAAGATCAGGGCAAC
CTGGCAGATGCAGAACCTCTTTTCCGGCGCGCGCTGGCCATCACGGAGAG
GGCATTTGGCGCAGAGCATACTGACACAGCGCTTTCACTGAACAACCTTG
CCACGCTGCTGGAAACTCAGGGCAACCTGGCAGAGGCGGAGCCGTTGTAC
CGGCGCGCGCTGGCCATCAATGAGGAGGCGCTTGGCGCCCAGCATCCAGA
CACGGTAACAGTGCGCGACGATCTTGCCGACCTGTCGGAAGCCCGCCAGC
TGCAACCAGCTGGTGCACCGGCGCATGCTGGCCATTTGCAAGAGGCGCCT
AGCGCTGAGCACCCACCCTCGAAGATGGCGGCAACAGTGCTCAACAAATC
ATTGCAGCTGCATGACTGA back to top Coding sequence (CDS) from alignment at Contig_127:298445..301363-
>mRNA_14866 ID=mRNA_14866|Name=jgi.p|Trimin1|175564|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2919bp|location=Sequence derived from alignment at Contig_127:298445..301363- (Tribonema minus UTEX_B_3156 ) back to top