mRNA_13580 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352635
Unique NamemRNA_13580
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352635 vs. uniprot
Match: A0A836CPA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA0_9STRA)

HSP 1 Score: 285 bits (728), Expect = 3.660e-96
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MKLRLLLLLPTAALLSHIHSSVANAGPGLRDGTPELRRSIGFSGFTGLKDADVDLDSLNSTSCATYMCGQAVDIAAAYMDAGCNGSFSSYYTSYASTVALYGSLDRRRAQGDASGIPVSTAITLAAVAGVLALVGGIMIGFMVRGPKVLHL 453
            MKLRLLLLLPTAALLSHIHSSVANAGPGLRDGTPELRRSIGFSGFTGLKDADVDLDSLNSTSCATYMCGQAVDIAAAYMDAGCNGSFSSYYTSYASTVALYGSLDRRRAQGDASGIPVSTAITLAAVAGVLALVGGIMIGFMVRGPKVLHL
Sbjct:    1 MKLRLLLLLPTAALLSHIHSSVANAGPGLRDGTPELRRSIGFSGFTGLKDADVDLDSLNSTSCATYMCGQAVDIAAAYMDAGCNGSFSSYYTSYASTVALYGSLDRRRAQGDASGIPVSTAITLAAVAGVLALVGGIMIGFMVRGPKVLHL 151
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352635 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CPA0_9STRA3.660e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:318679..319269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352635|estExt_Genemark1.C_Ctg_1260040
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001480.1
TranscriptId352957
TrackFilteredModels1
ProteinId352635
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352635gene_13580Tribonema minus UTEX_B_3156 geneContig_126 318679..319269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13580_1exon_13580_1Tribonema minus UTEX_B_3156 exonContig_126 318679..319269 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13580UTR3_13580Tribonema minus UTEX_B_3156 three_prime_UTRContig_126 318679..318813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13580CDS_13580Tribonema minus UTEX_B_3156 CDSContig_126 318814..319269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352635Trimin1|352635|estExt_Genemark1.C_Ctg_1260040Tribonema minus UTEX_B_3156 polypeptideContig_126 318814..319269 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13580 ID=mRNA_13580|Name=jgi.p|Trimin1|352635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_126:318679..319269- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGAGGCTGCTGCTGCTCCTGCCGACTGCGGCGCTGCTTTCTCA
CATTCATTCATCGGTAGCAAATGCCGGACCCGGACTAAGGGATGGCACAC
CAGAGCTTCGCCGCAGCATCGGATTTTCCGGATTTACAGGGCTCAAGGAC
GCCGACGTAGATCTTGACTCTCTCAACTCCACGTCCTGTGCCACCTACAT
GTGCGGGCAAGCCGTAGACATCGCCGCTGCCTACATGGATGCTGGGTGCA
ACGGCAGCTTCTCCAGCTACTACACATCCTATGCATCGACGGTGGCGCTG
TACGGCAGCCTGGATCGGCGGAGGGCGCAGGGGGACGCCTCGGGGATACC
CGTCAGCACGGCCATTACTCTTGCTGCGGTGGCTGGGGTGCTGGCGCTAG
TTGGCGGGATCATGATTGGGTTTATGGTGAGAGGACCCAAGGTGTTGCAC
CTGTAGGCGACTAGCACCTGTGTGTCAGAGTGGTGCGTCCTTCGCGTCAC
GATACGCCTTCGTCCGTGTATCTTGTGGACTGTTTCTTACTGTTGGTGTT
TTTATCTGTTGTCATACGTAAATGTCACTTTCCGTTTTGAA
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protein sequence of jgi.p|Trimin1|352635

>Trimin1|352635|estExt_Genemark1.C_Ctg_1260040 ID=Trimin1|352635|estExt_Genemark1.C_Ctg_1260040|Name=jgi.p|Trimin1|352635|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
MKLRLLLLLPTAALLSHIHSSVANAGPGLRDGTPELRRSIGFSGFTGLKD
ADVDLDSLNSTSCATYMCGQAVDIAAAYMDAGCNGSFSSYYTSYASTVAL
YGSLDRRRAQGDASGIPVSTAITLAAVAGVLALVGGIMIGFMVRGPKVLH
L*
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mRNA from alignment at Contig_126:318679..319269-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13580 ID=mRNA_13580|Name=jgi.p|Trimin1|352635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_126:318679..319269- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGAGGCTGCTGCTGCTCCTGCCGACTGCGGCGCTGCTTTCTCA
CATTCATTCATCGGTAGCAAATGCCGGACCCGGACTAAGGGATGGCACAC
CAGAGCTTCGCCGCAGCATCGGATTTTCCGGATTTACAGGGCTCAAGGAC
GCCGACGTAGATCTTGACTCTCTCAACTCCACGTCCTGTGCCACCTACAT
GTGCGGGCAAGCCGTAGACATCGCCGCTGCCTACATGGATGCTGGGTGCA
ACGGCAGCTTCTCCAGCTACTACACATCCTATGCATCGACGGTGGCGCTG
TACGGCAGCCTGGATCGGCGGAGGGCGCAGGGGGACGCCTCGGGGATACC
CGTCAGCACGGCCATTACTCTTGCTGCGGTGGCTGGGGTGCTGGCGCTAG
TTGGCGGGATCATGATTGGGTTTATGGTGAGAGGACCCAAGGTGTTGCAC
CTGTAGGCGACTAGCACCTGTGTGTCAGAGTGGTGCGTCCTTCGCGTCAC
GATACGCCTTCGTCCGTGTATCTTGTGGACTGTTTCTTACTGTTGGTGTT
TTTATCTGTTGTCATACGTAAATGTCACTTTCCGTTTTGAA
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Coding sequence (CDS) from alignment at Contig_126:318679..319269-

>mRNA_13580 ID=mRNA_13580|Name=jgi.p|Trimin1|352635|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_126:318679..319269- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGAGGCTGCTGCTGCTCCTGCCGACTGCGGCGCTGCTTTCTCA
CATTCATTCATCGGTAGCAAATGCCGGACCCGGACTAAGGGATGGCACAC
CAGAGCTTCGCCGCAGCATCGGATTTTCCGGATTTACAGGGCTCAAGGAC
GCCGACGTAGATCTTGACTCTCTCAACTCCACGTCCTGTGCCACCTACAT
GTGCGGGCAAGCCGTAGACATCGCCGCTGCCTACATGGATGCTGGGTGCA
ACGGCAGCTTCTCCAGCTACTACACATCCTATGCATCGACGGTGGCGCTG
TACGGCAGCCTGGATCGGCGGAGGGCGCAGGGGGACGCCTCGGGGATACC
CGTCAGCACGGCCATTACTCTTGCTGCGGTGGCTGGGGTGCTGGCGCTAG
TTGGCGGGATCATGATTGGGTTTATGGTGAGAGGACCCAAGGTGTTGCAC
CTGTAG
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