mRNA_14176 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175447
Unique NamemRNA_14176
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A836CME1_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME1_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 2.810e-146
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:    1 MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 585
            MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH
Sbjct:    1 MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 195
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A835Z104_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z104_9STRA)

HSP 1 Score: 346 bits (887), Expect = 1.800e-116
Identity = 167/189 (88.36%), Postives = 172/189 (91.01%), Query Frame = 1 
Query:   25 HDVLESQG--FSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 585
            HD  + +G   +K   +    YRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPD+PEGREILELLKRAFEHRLLFTV TS TTGISN VVWASIHQKTRMDGGATAFG PDSGYFLRVKQELKAAGIH
Sbjct:  229 HDGGDCEGGASAKMASRRYAFYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDMPEGREILELLKRAFEHRLLFTVRTSLTTGISNMVVWASIHQKTRMDGGATAFGCPDSGYFLRVKQELKAAGIH 417
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.720e-55
Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 1 
Query:   70 ALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTIT---RTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            AL L +C  H+MHA CI  VF    PKCPTC++ YG   GDQPDGTMT+    R  +  SGY + GTI++ Y  P G +    P PG  + G  R AYLPD   GRE+L LL+++FE R+ FTVGTS TTG SN V+W  +H KT   GG+++FGYPD GYF RVK EL A GI
Sbjct:  243 ALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFEQRMTFTVGTSITTGRSNCVIWNGVHHKTNTTGGSSSFGYPDPGYFGRVKAELLAKGI 416
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BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B3RZQ8_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RZQ8_9TELE)

HSP 1 Score: 179 bits (453), Expect = 1.140e-53
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:   94 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:   37 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 199
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B3RY55_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RY55_9TELE)

HSP 1 Score: 179 bits (453), Expect = 1.290e-52
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:   94 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:  119 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 281
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B4U397_SERDU (E3 ubiquitin-protein ligase n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4U397_SERDU)

HSP 1 Score: 171 bits (432), Expect = 1.820e-50
Identity = 85/167 (50.90%), Postives = 106/167 (63.47%), Query Frame = 1 
Query:   85 RCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDG-TMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            RC  H     C+K  F    P CPTC R YG   G QPDG  MT+T+      GY+  GTI++ Y IP G++ +A P PG+P+ G  R AYLPD  EGR I++LL+RAF+ +L+FTVG S T+G +NTV W  IH KT   GG T +GYPD GY  RV+ ELKA GI
Sbjct:   37 RC-KHSFCRDCLKRAFDY-KPVCPTCGRLYGTLTGTQPDGGRMTVTKNSSSLPGYNKYGTIIIQYYIPSGIQKEAHPNPGQPYEGVSRTAYLPDSSEGRMIVKLLRRAFDQKLIFTVGQSTTSGRNNTVTWNDIHHKTSTHGGPTHYGYPDPGYMSRVQDELKAKGI 201
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A8C6U4R4_9GOBI (E3 ubiquitin-protein ligase n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U4R4_9GOBI)

HSP 1 Score: 170 bits (430), Expect = 2.310e-50
Identity = 79/163 (48.47%), Postives = 104/163 (63.80%), Query Frame = 1 
Query:   94 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            SH   + CI  VF R  P CP CN ++G   G QP+GTM++TR+    SGY + G+IV+ Y    G++    P P +P+ G  R AYLPD  EG ++L+LLK+AFE RL+FT+G S TTG+ N + W  IH KT M GG   FGYPD GY  RV++EL+  GI
Sbjct:   22 SHSFCSQCIDTVF-RLKPACPICNTFHGVYTGTQPEGTMSVTRSGQSVSGYEHCGSIVIDYVFASGLQGPEHPNPDKPYRGTARTAYLPDCAEGEKVLKLLKKAFEQRLIFTIGQSATTGLHNVITWNDIHHKTSMKGGPECFGYPDPGYLSRVQEELRLKGI 183
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BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: UPI000CD5E3E4 (uncharacterized protein LOC111854035 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD5E3E4)

HSP 1 Score: 179 bits (453), Expect = 3.440e-50
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:   94 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:  362 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 524
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BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3Q1JLL6_ANATE (E3 ubiquitin-protein ligase n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JLL6_ANATE)

HSP 1 Score: 170 bits (430), Expect = 3.770e-50
Identity = 80/156 (51.28%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:  115 CIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            C+K       P CP C   +G   GDQPDG M++        GYS   TIV+TYDIP G + +  P PG+P+ G  R AYLPD  EGRE+L+LL++AF+ +L+FTVGTSRTTG+ N V W  IH KT   GG   FGYPD  Y  RV++ELKA GI
Sbjct:   47 CLKQAEKSLGPICPVCKDVFGVVEGDQPDGKMSVRTEYFSLPGYSYCQTIVITYDIPSGRQTEKHPKPGQPYHGISRSAYLPDNKEGREVLQLLRKAFDQKLIFTVGTSRTTGLENQVTWNDIHHKTSTSGGPQGFGYPDPDYLSRVREELKAKGI 202
[Close]
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A674MIA3_TAKRU (E3 ubiquitin-protein ligase n=5 Tax=Takifugu TaxID=31032 RepID=A0A674MIA3_TAKRU)

HSP 1 Score: 169 bits (429), Expect = 3.820e-50
Identity = 79/175 (45.14%), Postives = 113/175 (64.57%), Query Frame = 1 
Query:   58 DGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 582
            D  Q  +  +C SH   + C+++ F R  P CP CN +YG   G+QP+GTMT+TR+     GY   G+IV+ Y  P G++    P PG  ++G  R+A+LP   EG ++L+LLK+AF+ +L+FTVG S TTG++N + W  IH KTRMDGG  +FGYPD  Y  RV++EL+  G+
Sbjct:   16 DRIQGKKTLKC-SHSFCSECLESSFKR-KPACPVCNTFYGTHTGNQPEGTMTVTRSQQRLPGYERCGSIVIHYIFPAGIQGSEHPNPGVRYSGTSRIAFLPACEEGEKVLKLLKKAFDRKLIFTVGRSVTTGLNNVITWNDIHHKTRMDGGPQSFGYPDPQYLSRVQEELRLKGV 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CME1_9STRA2.810e-146100.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A835Z104_9STRA1.800e-11688.36RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D8LIP8_ECTSI2.720e-5552.87RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A3B3RZQ8_9TELE1.140e-5352.15E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops ... [more]
A0A3B3RY55_9TELE1.290e-5252.15E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops ... [more]
A0A3B4U397_SERDU1.820e-5050.90E3 ubiquitin-protein ligase n=1 Tax=Seriola dumeri... [more]
A0A8C6U4R4_9GOBI2.310e-5048.47E3 ubiquitin-protein ligase n=1 Tax=Neogobius mela... [more]
UPI000CD5E3E43.440e-5052.15uncharacterized protein LOC111854035 n=1 Tax=Param... [more]
A0A3Q1JLL6_ANATE3.770e-5051.28E3 ubiquitin-protein ligase n=1 Tax=Anabas testudi... [more]
A0A674MIA3_TAKRU3.820e-5045.14E3 ubiquitin-protein ligase n=5 Tax=Takifugu TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:401996..402952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175447|e_gw1.125.53.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04330,map04330
KEGG koko:K06058
EC2.3.2.27
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
Preferred nameDTX3L
Descriptionregulation of NAD ADP-ribosyltransferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGs2CTH7@1|root,2RGAW@2759|Eukaryota
Evalue4.45e-56
Seed ortholog2880.D8LIP8
Hectar predicted targeting categoryother localisation
TranscriptId175769
TrackFilteredModels1
ProteinId175447
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175447gene_14176Tribonema minus UTEX_B_3156 geneContig_125 401996..402952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14176_1exon_14176_1Tribonema minus UTEX_B_3156 exonContig_125 401996..402286 +
exon_14176_2exon_14176_2Tribonema minus UTEX_B_3156 exonContig_125 402404..402489 +
exon_14176_3exon_14176_3Tribonema minus UTEX_B_3156 exonContig_125 402593..402739 +
exon_14176_4exon_14176_4Tribonema minus UTEX_B_3156 exonContig_125 402889..402952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14176CDS_14176Tribonema minus UTEX_B_3156 CDSContig_125 401996..402286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175447Trimin1|175447|e_gw1.125.53.1Tribonema minus UTEX_B_3156 polypeptideContig_125 401996..402952 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14176 ID=mRNA_14176|Name=jgi.p|Trimin1|175447|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_125:401996..402952+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACACGTACCCCATCCAACATGATGTACTTGAATCGCAGGGCTT
CAGCAAAGATGGCAAGCAGGCGCTACGCCTTTACAGGTGTGGCAGTCACT
TCATGCACGCCGCCTGCATCAAGGCGGTCTTTCACCGGTGTAGCCCGAAG
TGCCCCACTTGCAATAGGTGGTACGGTGCTGCCATGGGCGACCAGCCGGA
TGGCACCATGACCATCACAAGAACTGACATGGACTGCTCCGGCTACAGCA
ACGCCGGCACCATCGTCATGACGTATGACATACCTGACGGGGTGAGGCCT
CAGGCGCCCCCCGCCCCAGGGCGCCCCTTCACTGGCGCGAAGCGCGTCGC
CTACCTCCCCGACATCCCAGAGGGCAGGGAGATTTTGGAGCTGCTGAAGA
GGGCGTTCGAGCACAGGCTGCTGTTCACCGTCGGGACATCTCGTACCACT
GGCATATCAAACACGGTGGTGTGGGCCAGCATACACCAGAAGACCCGCAT
GGATGGCGGCGCAACCGCATTCGGGTACCCCGACAGCGGGTACTTCCTGC
GTGTCAAGCAGGAGCTGAAGGCGGCAGGCATCCATTGA
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protein sequence of jgi.p|Trimin1|175447

>Trimin1|175447|e_gw1.125.53.1 ID=Trimin1|175447|e_gw1.125.53.1|Name=jgi.p|Trimin1|175447|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPK
CPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRP
QAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTT
GISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH*
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mRNA from alignment at Contig_125:401996..402952+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14176 ID=mRNA_14176|Name=jgi.p|Trimin1|175447|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=957bp|location=Sequence derived from alignment at Contig_125:401996..402952+ (Tribonema minus UTEX_B_3156 )
ATGACTCACACGTACCCCATCCAACATGATGTACTTGAATCGCAGGGCTT
CAGCAAAGATGGCAAGCAGGCGCTACGCCTTTACAGGTGTGGCAGTCACT
TCATGCACGCCGCCTGCATCAAGGCGGTCTTTCACCGGTGTAGCCCGAAG
TGCCCCACTTGCAATAGGTGGTACGGTGCTGCCATGGGCGACCAGCCGGA
TGGCACCATGACCATCACAAGAACTGACATGGACTGCTCCGGCTACAGCA
ACGCCGGCACCATCGTCATGACGTATGACATACCTGACGGGGTAAGTGAC
GTTACGTGCCCCCACATGCTTGCTCATGTTGCACGTTACACCACGTGCGT
AATGCCAGCGTCGCACACACGTCAATTTGTGTGTGGTGGTGCTTGTCCGA
CCTTACAGGTGAGGCCTCAGGCGCCCCCCGCCCCAGGGCGCCCCTTCACT
GGCGCGAAGCGCGTCGCCTACCTCCCCGACATCCCAGAGGGCAGGTGAGA
TGTCAGCCACGGTGCCTGTACAGTGTCGTTGTATACGCAATGTGGTGTTG
CACGGGCTCAGCTGACGGTGCTGCACATTGTTTGCCGCGTAATGCAGGGA
GATTTTGGAGCTGCTGAAGAGGGCGTTCGAGCACAGGCTGCTGTTCACCG
TCGGGACATCTCGTACCACTGGCATATCAAACACGGTGGTGTGGGCCAGC
ATACACCAGAAGACCCGCATGGATGGCGGCGCAACCGCATTCGGGTGAGT
GTTCTCCATTGCGCACTTTGCGTGTGGCTTGCGTGTGGCTTGCGTGTGGC
TTGCGTGTGGCTTGCGTGTGGCTCGCGTGCGCACACTTTGCTGTAGCTGT
CCCTCTGACTGACTGGCACACCTCGGCCCTCACCGCTGCGCAGGTACCCC
GACAGCGGGTACTTCCTGCGTGTCAAGCAGGAGCTGAAGGCGGCAGGCAT
CCATTGA
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Coding sequence (CDS) from alignment at Contig_125:401996..402952+

>mRNA_14176 ID=mRNA_14176|Name=jgi.p|Trimin1|175447|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_125:401996..402952+ (Tribonema minus UTEX_B_3156 )
ATGACTCACACGTACCCCATCCAACATGATGTACTTGAATCGCAGGGCTT
CAGCAAAGATGGCAAGCAGGCGCTACGCCTTTACAGGTGTGGCAGTCACT
TCATGCACGCCGCCTGCATCAAGGCGGTCTTTCACCGGTGTAGCCCGAAG
TGCCCCACTTGCAATAGGTGGTACGGTGCTGCCATGGGCGACCAGCCGGA
TGGCACCATGACCATCACAAGAACTGACATGGACTGCTCCGGCTACAGCA
ACGCCGGCACCATCGTCATGACGTATGACATACCTGACGGGGTGAGGCCT
CAGGCGCCCCCCGCCCCAGGGCGCCCCTTCACTGGCGCGAAGCGCGTCGC
CTACCTCCCCGACATCCCAGAGGGCAGGGAGATTTTGGAGCTGCTGAAGA
GGGCGTTCGAGCACAGGCTGCTGTTCACCGTCGGGACATCTCGTACCACT
GGCATATCAAACACGGTGGTGTGGGCCAGCATACACCAGAAGACCCGCAT
GGATGGCGGCGCAACCGCATTCGGGTACCCCGACAGCGGGTACTTCCTGC
GTGTCAAGCAGGAGCTGAAGGCGGCAGGCATCCATTGA
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