mRNA_14514 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175325
Unique NamemRNA_14514
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 591 bits (1523), Expect = 2.040e-213
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1 
Query:    1 MRFDATADRDITGLGTWGELAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 882
            MRFDATADRDITGLGTWGELAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL
Sbjct:    1 MRFDATADRDITGLGTWGELAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 294
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.240e-76
Identity = 139/294 (47.28%), Postives = 182/294 (61.90%), Query Frame = 1 
Query:   58 LAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRG----------QPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLAR------------GAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTG 873
            L Y  +DPR  LEG+ G L++ +E AL EL    + L  DL LVRG             EPLRLCLLRFLR N F   KAL+QLE+ V +R +     LL +   D+L C+ E  N ++P W  G D++GRP+L  +YG   + E+  LTT+E M   H  EQE+ LR++RRR+L              G IVD+ VV+IDTGG+ +R VT  F+ L K  AH+DQ ++PE+LG+ FI+NTP LF+YVW MF+PL+D RTR KI I S+P+DW  AL E+   D L PEYGGTG
Sbjct:    2 LRYHPDDPRSSLEGYEGSLTQDEEAALAELQSAAQGL--DLGLVRGAYGQGFERGDHAVEPLRLCLLRFLRGNAFIVNKALSQLEDCVEYRRQHPTDRLLTKSPHDILACNVEDFNSFYPRWLMGFDKLGRPILATRYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEXXXXXXXAAAERAGHIVDTAVVVIDTGGLTLRHVTKAFVRLFKLRAHMDQLLFPEMLGKCFIVNTPSLFSYVWSMFSPLVDERTRSKISIISKPQDWTKALQEIADPDQLSPEYGGTG 293
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BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A7S1UE19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE19_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.300e-63
Identity = 109/263 (41.44%), Postives = 163/263 (61.98%), Query Frame = 1 
Query:   97 GFHGQLSEPQEGALRELYGLVESLNLDLTLVR-GQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 882
            G+ G L E QE  L +   +V +  L   L +  +  E      LRFLRA  ++   A+A++E ++++R      +++  + + +LGCDPEA+NRYFPHW  G DR  RP+L KQYG F +  LL  TTME ++R HVW Q+  + +M+ +    G  +++  +++D  GMA+ QVT DF+ L++++A +DQ  +PE LG +FI+N P +F  VW+   P LD  T  KIKIFSR  DW P L+EL+  ++LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A6U4K456_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K456_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.280e-61
Identity = 109/263 (41.44%), Postives = 163/263 (61.98%), Query Frame = 1 
Query:   97 GFHGQLSEPQEGALRELYGLVESLNLDLTLVR-GQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 882
            G+ G L E QE  L +   +V +  L   L +  +  E      LRFLRA  ++   A+A++E ++++R      +++  + + +LGCDPEA+NRYFPHW  G DR  RP+L KQYG F +  LL  TTME ++R HVW Q+  + +M+ +    G  +++  +++D  GMA+ QVT DF+ L++++A +DQ  +PE LG +FI+N P +F  VW+   P LD  T  KIKIFSR  DW P L+EL+  ++LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A6U4K475_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K475_9STRA)

HSP 1 Score: 218 bits (555), Expect = 9.810e-61
Identity = 109/263 (41.44%), Postives = 163/263 (61.98%), Query Frame = 1 
Query:   97 GFHGQLSEPQEGALRELYGLVESLNLDLTLVR-GQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 882
            G+ G L E QE  L +   +V +  L   L +  +  E      LRFLRA  ++   A+A++E ++++R      +++  + + +LGCDPEA+NRYFPHW  G DR  RP+L KQYG F +  LL  TTME ++R HVW Q+  + +M+ +    G  +++  +++D  GMA+ QVT DF+ L++++A +DQ  +PE LG +FI+N P +F  VW+   P LD  T  KIKIFSR  DW P L+EL+  ++LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286
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BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A7S0LSP1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSP1_9EUKA)

HSP 1 Score: 171 bits (433), Expect = 1.310e-47
Identity = 97/259 (37.45%), Postives = 146/259 (56.37%), Query Frame = 1 
Query:  112 LSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLT--TMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 882
            LS P +  L EL   + + N++L  +     +   L LLR+LRAN FN  K    +  N+ +R  +N+ +L++Q   D+LGC    +  +FPHW  G D+ GRP+L KQ G F + E+  L     ESM+R H+WEQE+  RL   +SL    I+++V V++D  G+ +  +++DF A+M  +  +DQ MYPE LG++ IIN P +F  ++ +  PLLD  T  KI I  +  D +  L   I  + LP  Y GT  PL
Sbjct:   49 LSAPNQAILTELIQWIVTENINLNDLSLDILDE-SLLLLRYLRANNFNVKKTKKHIVTNIEWRKSQNIPELMKQNPEDILGCKLADLVGFFPHWHSGYDKTGRPLLFKQQGAFDIKEIKKLCGGNFESMLRYHIWEQEVASRLCYEQSLKTRTIIETVTVVLDVKGLTLSSISSDFRAMMNGIIKMDQDMYPETLGKILIINAPSVFPMIFGLLKPLLDPITAAKINI--KGTDHKALLDSSIGLEFLPENYCGTLPPL 304
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BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A7S3TPE3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TPE3_9SPIT)

HSP 1 Score: 169 bits (428), Expect = 8.020e-47
Identity = 103/278 (37.05%), Postives = 151/278 (54.32%), Query Frame = 1 
Query:   58 LAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLV-----ESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGG-FVVSELL-SLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGT 870
            L Y +      L G HG L + +   L++L   V     +   +D   +  +  E L   LLRFLRA GF+  KAL  L+ +V++R +  +  + +Q A ++LGCDP  I+RY P    G D+ GRPV+    GG  V++E+L + T++E ++R HVW QE   RL+ ++S   G  V+ +VVI+DT G  +          ++R+A VD   YPE LG + + N   L +  W+    LLD RTR KI   S P+     LLE I AD+LP EYGG+
Sbjct:   56 LPYHVLSILQALPGHHGCLQQQEAQTLKDLRSAVLAWEGKEKYIDCLAMTDEHEENL---LLRFLRARGFDKDKALKMLQHDVDWRSQIGLASMCKQPAEEILGCDPAKIDRYIPLKHIGYDKQGRPVIANHLGGKSVIAEMLDTCTSLEQLIRYHVWMQESFCRLLTQQSQKLGVKVEQIVVIMDTKGFYLGLFNRRSQEFLQRIAEVDSNHYPERLGLLVVANASPLISMAWRGIGKLLDERTRQKIHFTSSPQAAGKVLLEHIEADMLPKEYGGS 330
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A7S3M3T0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3T0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.400e-46
Identity = 88/240 (36.67%), Postives = 136/240 (56.67%), Query Frame = 1 
Query:   46 TWGELAYSLEDPRHVLEG-FHGQLSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLT---TMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAP 753
            T+ E  Y    P  +  G +  QLSE  + AL  +   V+   +DL+ + G       L +LR+LRAN F+A K +A +++N+ +R   NV +++ Q    +LGC  E +   FPHW  G D+ GRPV+ KQYG F   ++  L      +++ + H+WEQE   RL   +S+A   IV+++  ++D   M M Q+T+DF+ L K +A +DQ  YPE +G++FIIN P  F  VW+M  P
Sbjct:    4 TYREYPYPETTPGSINNGKYWHQLSEQNQEALNAVEKWVQDEQIDLSQL-GTSDLHFSLLILRYLRANRFDATKTIAHIQKNIEWRKTMNVSEIVSQSPEKILGCTLEELTNVFPHWHSGYDKTGRPVIYKQYGKFDAGQIKKLVGGKNFDNVTKYHIWEQEACGRLCLAKSIADKKIVETITGVVDIKDMGMSQITSDFLNLTKAIAAIDQNQYPETMGRVFIINAPAAFPLVWRMVKP 242
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A6B2L9S6_9EUKA (CRAL-TRIO domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9S6_9EUKA)

HSP 1 Score: 160 bits (406), Expect = 8.030e-44
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1 
Query:   73 EDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGV 876
            E+P  V     GQL E     L+   G+VE   +++     +PAE   L  LRFLRA  FN   A+A L+E++ +R++ENV+++L++   ++LGC  E I R  P W  G D+VGRPV+  ++G   + ++L  TT E + R H++  E  +  +  +S      ++   ++ID  G  +   T+D    +K +  VD A YPE LG++ +I  P      W +    LD RTRDKI+I     D+   L   +  D + PEYGGTGV
Sbjct:   38 EEPGFVFYLDDGQLEE-----LKRFIGVVEEQGIEVGKYLVRPAETEVLLYLRFLRARQFNVQAAIAMLKEDIEWREKENVLNILKETPEEILGCPEEWIMRRVPQWVQGFDKVGRPVIWWEFGNANIEKVLQHTTQEKLGRHHIYLMETFITKLSEQSEKLQYNIEDFALVIDAHGWKISYATSDAYNFVKTIVGVDSAHYPERLGKVIVIRAPMALATAWAIIKNWLDPRTRDKIEILDS--DYHEKLFSTVDKDQIGPEYGGTGV 298
[Close]
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Match: A0A6H5JC33_9PHAE (CRAL_TRIO_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC33_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.050e-43
Identity = 90/210 (42.86%), Postives = 122/210 (58.10%), Query Frame = 1 
Query:   58 LAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRG----------QPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGA-----------IVDSVVVIIDTGGMAMRQVT 624
            L Y  +DPR  LEG+ G L++ +E AL EL    + L  DL +VRG             EPLRLCLLRFLR N F+  KAL+QLE+ V +R +     LL +   D+L C+ E  N ++P W  G D++GRP+L  QYG   + E+  LTT+E M   H  EQE+ LR++RRR+L  G            IVD+ VV+IDTGG+ +R V+
Sbjct:    2 LRYHPDDPRSSLEGYEGSLTQDEEAALAELRSAAQGL--DLGMVRGAYGQGFEGGDHAVEPLRLCLLRFLRGNAFDVNKALSQLEDCVEYRRQHPTDRLLSKSPHDILACNLEDFNSFYPRWLMGFDKLGRPILATQYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEGGGGEGAAAERAGHIVDTAVVVIDTGGLTLRHVS 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175325 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLC3_9STRA2.040e-213100.00CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LG14_ECTSI1.240e-7647.28CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A7S1UE19_9STRA2.300e-6341.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6U4K456_9STRA4.280e-6141.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4K475_9STRA9.810e-6141.44Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0LSP1_9EUKA1.310e-4737.45Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S3TPE3_9SPIT8.020e-4737.05Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3M3T0_9STRA1.400e-4636.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6B2L9S6_9EUKA8.030e-4434.70CRAL-TRIO domain-containing protein n=1 Tax=Arcell... [more]
A0A6H5JC33_9PHAE1.050e-4342.86CRAL_TRIO_N domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_123contigContig_123:415244..416477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175325|e_gw1.123.41.1
BRITEko00000,ko04131
KEGG koko:K19996
Descriptioncholestenol delta-isomerase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1471@1|root,KOG4826@1|root,KOG1471@2759|Eukaryota,KOG4826@2759|Eukaryota
Evalue2.02e-77
Seed ortholog2880.D8LG14
Hectar predicted targeting categoryother localisation
TranscriptId175647
TrackFilteredModels1
ProteinId175325
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175325gene_14514Tribonema minus UTEX_B_3156 geneContig_123 415244..416477 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14514_1exon_14514_1Tribonema minus UTEX_B_3156 exonContig_123 415244..416037 +
exon_14514_2exon_14514_2Tribonema minus UTEX_B_3156 exonContig_123 416390..416477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14514CDS_14514Tribonema minus UTEX_B_3156 CDSContig_123 415244..416037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175325Trimin1|175325|e_gw1.123.41.1Tribonema minus UTEX_B_3156 polypeptideContig_123 415244..416477 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14514 ID=mRNA_14514|Name=jgi.p|Trimin1|175325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=882bp|location=Sequence derived from alignment at Contig_123:415244..416477+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGACGCCACTGCCGACCGCGATATCACGGGGCTGGGCACCTG
GGGAGAGCTAGCCTACAGCTTGGAGGACCCACGCCATGTGCTAGAAGGAT
TCCATGGGCAGCTTAGCGAACCACAGGAGGGAGCTCTCCGAGAGCTGTAC
GGGCTAGTTGAATCTCTAAATCTGGACCTCACTCTAGTTCGTGGCCAACC
AGCTGAGCCCCTCAGGCTCTGCCTGCTCCGATTCCTGCGTGCCAACGGCT
TCAATGCCCCCAAAGCCCTGGCGCAGCTGGAGGAGAATGTGAACTTCAGA
GACAGGGAAAATGTGGTCGACCTGCTGCAGCAAAAGGCCTCGGATGTGCT
GGGCTGCGATCCCGAGGCCATCAACCGCTACTTCCCGCACTGGGACTTCG
GGGAGGACAGGGTGGGGAGGCCGGTGCTGTGCAAGCAGTACGGGGGTTTT
GTGGTGAGTGAGCTGCTGAGCCTCACCACCATGGAGAGCATGGTGCGCAG
CCACGTGTGGGAGCAGGAGATGACGCTGCGGCTCATGCGGCGGCGCTCGC
TGGCACGCGGCGCCATCGTCGACAGCGTCGTCGTCATCATTGACACGGGA
GGCATGGCCATGCGGCAGGTCACCGCTGACTTCATTGCGCTCATGAAGCG
CGTCGCACACGTCGACCAGGCCATGTACCCGGAGCTCCTCGGCCAGATGT
TCATCATCAACACCCCCGGCCTATTTACCTACGTCTGGAAGATGTTTGCG
CCACTGCTGGACTCGCGCACGCGCGACAAGATCAAGATCTTCAGCCGCCC
GCGCGACTGGCAGCCCGCCCTGCTAGAGCTCATCCCCGCGGACGTCCTCC
CCCCCGAGTACGGCGGCACGGGAGTGCCCCTC
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protein sequence of jgi.p|Trimin1|175325

>Trimin1|175325|e_gw1.123.41.1 ID=Trimin1|175325|e_gw1.123.41.1|Name=jgi.p|Trimin1|175325|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MRFDATADRDITGLGTWGELAYSLEDPRHVLEGFHGQLSEPQEGALRELY
GLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFR
DRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGF
VVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTG
GMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFA
PLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL
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mRNA from alignment at Contig_123:415244..416477+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14514 ID=mRNA_14514|Name=jgi.p|Trimin1|175325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1234bp|location=Sequence derived from alignment at Contig_123:415244..416477+ (Tribonema minus UTEX_B_3156 )
ATGCGCTTCGACGCCACTGCCGACCGCGATATCACGGGGCTGGGCACCTG
GGGAGAGCTAGCCTACAGCTTGGAGGACCCACGCCATGTGCTAGAAGGAT
TCCATGGGCAGCTTAGCGAACCACAGGAGGGAGCTCTCCGAGAGCTGTAC
GGGCTAGTTGAATCTCTAAATCTGGACCTCACTCTAGTTCGTGGCCAACC
AGCTGAGCCCCTCAGGCTCTGCCTGCTCCGATTCCTGCGTGCCAACGGCT
TCAATGCCCCCAAAGCCCTGGCGCAGCTGGAGGAGAATGTGAACTTCAGA
GACAGGGAAAATGTGGTCGACCTGCTGCAGCAAAAGGCCTCGGATGTGCT
GGGCTGCGATCCCGAGGCCATCAACCGCTACTTCCCGCACTGGGACTTCG
GGGAGGACAGGGTGGGGAGGCCGGTGCTGTGCAAGCAGTACGGGGGTTTT
GTGGTGAGTGAGCTGCTGAGCCTCACCACCATGGAGAGCATGGTGCGCAG
CCACGTGTGGGAGCAGGAGATGACGCTGCGGCTCATGCGGCGGCGCTCGC
TGGCACGCGGCGCCATCGTCGACAGCGTCGTCGTCATCATTGACACGGGA
GGCATGGCCATGCGGCAGGTCACCGCTGACTTCATTGCGCTCATGAAGCG
CGTCGCACACGTCGACCAGGCCATGTACCCGGAGCTCCTCGGCCAGATGT
TCATCATCAACACCCCCGGCCTATTTACCTACGTCTGGAAGATGTTTGCG
CCACTGCTGGACTCGCGCACGCGCGACAAGATCAAGATCTTCAGGTGAGC
AGGAAATGCGCAGCAAGTCTTTTACCAGTTGATACACCATGAACAAGACT
GCAGGCTGAATGTTTCACGTGTAAGTGTGGTGTGTGGCGGACAAAATATA
CAATGATAGAGATGAAGATGCCTCACGATGAACACACAGATGAATGACAT
GTATGGGTGCACCTGATCACAGACTCCTAGCTCCACTCATCCCCCAGATT
CATGCAGAAGGATTGCATCATAGAGACAACCCGGCACTAAGAACTCATTG
CCGGCATGTACCCTCAAAAGCATGGGTGCAAACCCTCAGTAGCTCACCCT
GACTTTAACCTGTTTTGCCTCCCACCCTAATTGTAACCCTCTTCAGCCGC
CCGCGCGACTGGCAGCCCGCCCTGCTAGAGCTCATCCCCGCGGACGTCCT
CCCCCCCGAGTACGGCGGCACGGGAGTGCCCCTC
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Coding sequence (CDS) from alignment at Contig_123:415244..416477+

>mRNA_14514 ID=mRNA_14514|Name=jgi.p|Trimin1|175325|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_123:415244..416477+ (Tribonema minus UTEX_B_3156 )
ATGCGCTTCGACGCCACTGCCGACCGCGATATCACGGGGCTGGGCACCTG
GGGAGAGCTAGCCTACAGCTTGGAGGACCCACGCCATGTGCTAGAAGGAT
TCCATGGGCAGCTTAGCGAACCACAGGAGGGAGCTCTCCGAGAGCTGTAC
GGGCTAGTTGAATCTCTAAATCTGGACCTCACTCTAGTTCGTGGCCAACC
AGCTGAGCCCCTCAGGCTCTGCCTGCTCCGATTCCTGCGTGCCAACGGCT
TCAATGCCCCCAAAGCCCTGGCGCAGCTGGAGGAGAATGTGAACTTCAGA
GACAGGGAAAATGTGGTCGACCTGCTGCAGCAAAAGGCCTCGGATGTGCT
GGGCTGCGATCCCGAGGCCATCAACCGCTACTTCCCGCACTGGGACTTCG
GGGAGGACAGGGTGGGGAGGCCGGTGCTGTGCAAGCAGTACGGGGGTTTT
GTGGTGAGTGAGCTGCTGAGCCTCACCACCATGGAGAGCATGGTGCGCAG
CCACGTGTGGGAGCAGGAGATGACGCTGCGGCTCATGCGGCGGCGCTCGC
TGGCACGCGGCGCCATCGTCGACAGCGTCGTCGTCATCATTGACACGGGA
GGCATGGCCATGCGGCAGGTCACCGCTGACTTCATTGCGCTCATGAAGCG
CGTCGCACACGTCGACCAGGCCATGTACCCGGAGCTCCTCGGCCAGATGT
TCATCATCAACACCCCCGGCCTATTTACCTACGTCTGGAAGATGTTTGCG
CCACTGCTGGACTCGCGCACGCGCGACAAGATCAAGATCTTCAGCCGCCC
GCGCGACTGGCAGCCCGCCCTGCTAGAGCTCATCCCCGCGGACGTCCTCC
CCCCCGAGTACGGCGGCACGGGAGTGCCCCTC
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