mRNA_13924 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A836CLJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ9_9STRA) HSP 1 Score: 1057 bits (2734), Expect = 0.000e+0 Identity = 662/662 (100.00%), Postives = 662/662 (100.00%), Query Frame = 1
Query: 19 MKGAAACTALLATLLCGHAAPGDPVLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXPPVIPMKNWLLPNGNIDFRRLPPWTRCVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDGAFNDLDGDGAEDVPTDYDLDGDGTVDGEMAQPNXXXXXXXXXGIAAEQDHNADLIPDVDLNKDGIVDDLDGNGVPEIIPPVIYGPEGDAVVPPGAIPGGGVALPPGVEVGEDGDIFIDADADGVDDRYDGVFXXXXXXXXXXAEEAAAAAEAAAQVPDVTVGPVDANNDGVDDADEYIDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDASVSVTGSESETGSETGFXXXXXXXXXXXXEGLRRLL 2004
MKGAAACTALLATLLCGHAAPGDPVLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXPPVIPMKNWLLPNGNIDFRRLPPWTRCVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDGAFNDLDGDGAEDVPTDYDLDGDGTVDGEMAQPNXXXXXXXXXGIAAEQDHNADLIPDVDLNKDGIVDDLDGNGVPEIIPPVIYGPEGDAVVPPGAIPGGGVALPPGVEVGEDGDIFIDADADGVDDRYDGVFXXXXXXXXXXAEEAAAAAEAAAQVPDVTVGPVDANNDGVDDADEYIDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDASVSVTGSESETGSETGFXXXXXXXXXXXXEGLRRLL
Sbjct: 1 MKGAAACTALLATLLCGHAAPGDPVLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXPPVIPMKNWLLPNGNIDFRRLPPWTRCVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDGAFNDLDGDGAEDVPTDYDLDGDGTVDGEMAQPNXXXXXXXXXGIAAEQDHNADLIPDVDLNKDGIVDDLDGNGVPEIIPPVIYGPEGDAVVPPGAIPGGGVALPPGVEVGEDGDIFIDADADGVDDRYDGVFXXXXXXXXXXAEEAAAAAEAAAQVPDVTVGPVDANNDGVDDADEYIDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDASVSVTGSESETGSETGFXXXXXXXXXXXXEGLRRLL 662
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835ZD18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD18_9STRA) HSP 1 Score: 625 bits (1612), Expect = 2.430e-210 Identity = 305/497 (61.37%), Postives = 361/497 (72.64%), Query Frame = 1
Query: 286 LPNGNIDFRRLPPWTRCVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGG-FDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDGAFNDLDGDGAEDVPTDYDLDGDGTVDGEMAQPNXXXXXXXXXGIAAEQDHNADLIPDVDLNKDGIVDDLDGNGVPEIIPPVIYGPEGDAVVPP--GAIPG-----------------------------GGVALPPGVEVGEDGDIFIDADADGVDDRYDGVFXXXXXXXXXXAEEAAAAAEAA 1680
LPNG+IDF LPPWTRC Q PPGVKPGAC+QVMCMPK+VQPGD FHI +RFC+QRPRRWHL FGLLD +K++YGGAGAG++DT+ QCGEVTFEH FDA ++P G FDLMWKF+I+PNHGM+GFYVEDTFPNM+ EAGVDQQPNYLAPLD DCP ++M QWNLPPTG+QNGIEYT+IPKCFQPG W + VDTHLET D ADLHCNLQIGSG D+YLGP D+++ E V L+ANPKT SWA++P GYWTT P+LFTAA+TALV+P +PVY++CFM P A +N P GW L+REFYL MQFC+ F D++GDG DVPTD+DL+GDGTVDG+ QPN GIAAEQDHN D I DVDLN DGIVDDL ++ PPV+YGPEGDAV PP G + G G GV + + G++ +DA+ DGVDDR DG+F ++EAAAAA AA
Sbjct: 99 LPNGSIDFVNLPPWTRCEQGVKPPGVKPGACLQVMCMPKSVQPGDTFHITIRFCLQRPRRWHLAFGLLDLNSKQYYGGAGAGVLDTRAQCGEVTFEHTFDAKKSPGLGIFDLMWKFYIVPNHGMDGFYVEDTFPNMLGEAGVDQQPNYLAPLDKKMDCPNKEMQQWNLPPTGFQNGIEYTIIPKCFQPGQPWFVLVDTHLETMDEADLHCNLQIGSGGDVYLGPEDQYVTETNVYNLQANPKTGSWASVPPGYWTTHPILFTAAQTALVQPDTPVYLACFMVPPGAAYNPGFPEGWFFLDREFYLNMQFCDADPFQDINGDGILDVPTDFDLNGDGTVDGQPPQPNPNYIDLNGDGIAAEQDHNGDGIQDVDLNLDGIVDDLXXXXXXDMDPPVVYGPEGDAVAPPVGGTVSGTSSSXXXXXXXXXXXXXXXXXXXXXXXXXXGQQYANGVTIDDQGNLTVDANNDGVDDRRDGIFTDVNKNGIDDSDEAAAAARAA 595
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835YN55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN55_9STRA) HSP 1 Score: 331 bits (848), Expect = 6.030e-103 Identity = 149/269 (55.39%), Postives = 188/269 (69.89%), Query Frame = 1
Query: 412 PGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDM--LQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFC 1212
PG+ F + VRFC+QRPRRWHL F LLD TKE+Y G G GIVD ++QC EVTF FD P +LMWKF+++ N G YVED FPNM+AE GV QP+Y PLDPA CP D W+ PPTG+QN I+Y V+P CFQP W +QV+TH+ET D ADLHCNLQIGSGAD++LGPAD ++ E V L+ANP +W A+P YWT ++FT +T +V+ G PVY+SCF+ P A++N VPGGW +LEREF+ ++QFC
Sbjct: 2 PGNQFRVTVRFCLQRPRRWHLAFALLDMVTKEYYMGDGNGIVDMESQCAEVTFTDIFDV---PPDANNLMWKFYVVANWGNANDYVEDVFPNMLAETGVPMQPDYTQPLDPANMCPETDPNPRMWSYPPTGFQNAIDYAVVPPCFQPNAEWAVQVNTHIETVDEADLHCNLQIGSGADVFLGPADLYLTETDVPGLQANPVAKTWDALPPNYWTINDIVFTPEQTGMVQDGQPVYLSCFLVPAGAIYNAAVPGGWHLLEREFFTSVQFC 267
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A836CPC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC5_9STRA) HSP 1 Score: 324 bits (831), Expect = 8.390e-98 Identity = 165/311 (53.05%), Postives = 198/311 (63.67%), Query Frame = 1
Query: 334 CVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGE--------------TPAGGFDLMWKFFIIPNHGMNGF-YVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDG 1221
CVQ PPGVKPGACMQVMC+PK V+ D FH VRFC+QRPR+WHL FGLLD KTK + GG G GIVD + QC E TFEH F A + TP+ DLMWKFF IPN G YVEDTFPNM+AEAG+D QPNYL PL P DCP + WNLPPTG ++GI ++VIP C PG W I VDTH+E+ ADLH N+QIGSG D+YLG AD ++ E + L N P WT V FT A+T LV VY++ F+ ++ +NK VPGGW ++REFYL ++FC G
Sbjct: 63 CVQGVRPPGVKPGACMQVMCVPKAVEKLDKFHTTVRFCLQRPRKWHLAFGLLDMKTKAYLGGEGFGIVDEEWQCAEHTFEHVFLAPKDLPDPATTKPYPNLTPSK-LDLMWKFFAIPNWGTGADDYVEDTFPNMLAEAGIDIQPNYLKPLTPEGDCPIKPTRFWNLPPTGEEDGINFSVIPPCLAPGEEWTIVVDTHIESVPMADLHVNMQIGSGGDVYLGDADVYVTESDIFGLDKNT--------PGRKWTQNVVTFTKAQTKLVTRTDKVYLATFLVRPNSQYNKKVPGGWHFIDREFYLKVEFCAAG 364
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835YHE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE1_9STRA) HSP 1 Score: 248 bits (632), Expect = 1.860e-66 Identity = 144/339 (42.48%), Postives = 177/339 (52.21%), Query Frame = 1
Query: 349 IPPGVKPGACMQVMCMPKTV-------QP---------GDVFHIRVRFCMQRPRRWHL-------------------------------------------------TFGLLDQKTKEFYGGAGAGIV-DTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCP--AQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVP 1161
+PPG GA + P +V QP GD F + VRFC++RPRRWHL TF LLD KTKE+Y G GA I + ++QCGEVTF A TP G DLMWKF+I+P G YVEDTFPNM+AEAGV +QP+Y+ PL PAA C A + W+ PPTG QN I+Y V+P C PG W + V THLET DLHCNLQ+GSGAD P D ++ E V +AN SW+A+P GYWT ++FT +T +V PG+PVYV C P A F + VP
Sbjct: 25 LPPGQAAGAVVAPTVPPTSVGLMDFFQQPADLRCLQLVGDQFSVTVRFCLRRPRRWHLVRMARLTRPCLTFALLDMSPTIDALILNAIVLTLSPPTPLLPPLRASIQTFALLDMKTKEYYMGNGASIAAEQESQCGEVTFTQ---ALSTPPGARDLMWKFYIVPTWGTATDYVEDTFPNMLAEAGVPEQPDYMRPLPPAALCKESAPNPRLWSFPPTGLQNAIDYAVVPPCLTPGTTWALAVRTHLETQARGDLHCNLQLGSGAD---NPDDVYLTETDVWGREANSVAASWSALPPGYWTLHDIVFTPTQTRMVRPGAPVYVVCSRVPAGASFGEDVP 357
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835ZD28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD28_9STRA) HSP 1 Score: 226 bits (577), Expect = 3.600e-63 Identity = 122/293 (41.64%), Postives = 172/293 (58.70%), Query Frame = 1
Query: 355 PGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKL----------VPGGWKILEREFYLAM 1203
PGV G+C+QVMC+P ++ PG FH VR+C+QRPR +H +F ++D+ TK+ YG G QCGE T+ A TP DLM+KFF+ P G D FPN+IAE G+++QP++ A ++ A P + WN+ PTG QNGI++ +P C PG W I+V+THLET+DAADL NLQIG+GAD YLG D ++ E V + +NP W+ +P YWT+ + FT+ +T LV G +Y++ FM P V++ GWK L F+ +M
Sbjct: 13 PGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGF-TPGGAYQCGEHTYTQNVKA-VTPQP--DLMFKFFLQPVWGPPDLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTR---VWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSM 298
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835Z2T5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T5_9STRA) HSP 1 Score: 201 bits (510), Expect = 9.030e-54 Identity = 113/279 (40.50%), Postives = 158/279 (56.63%), Query Frame = 1
Query: 334 CVQNTIPPGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGG-FDLMWKFFIIPNHGMNGFYV--EDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVP 1161
C Q T PPGVKPG+C QV+C+P ++ G FH RVR+C+QRPRR HL LD TKE+YGG G + + QCGE TFE +A PA G ++++W++F+ P G + + E+ +PN IA G+D+QP Y +D DC + N PPTG Q+GI++ P C QPG + + V THL + AADLH NL IG+G D YLGP D F+AE + + W+ FT TA++ S Y++ F+ P + F+ +P
Sbjct: 48 CKQPTPPPGVKPGSCFQVVCLPTSIAIGAPFHTRVRWCLQRPRRSHLVVDTLDVNTKEWYGGDGY-TPEGEWQCGEHTFEQTMNAVPDPATGEYNVLWRYFVTPVWGDGRYDIREEEPYPNAIAATGIDRQPLYDGLVD---DCGLRPDRLVNFPPTGVQDGIDFPYTPYCIQPGEPFFVAVFTHLLSAPAADLHVNLHIGTGPDKYLGPDDIFVAESVEFGIPRDVDA---------IWSRHLARFTGRATAMLVGYSTPYLTAFLVPAGSTFDPSIP 313
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835YNJ3_9STRA (Fatty acid desaturase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ3_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.160e-28 Identity = 107/359 (29.81%), Postives = 158/359 (44.01%), Query Frame = 1
Query: 310 RRLPPWTR--CVQNTIPPGVKP--GACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIV--DTKTQCGEVTFEHPFD-AGETPAGG-------FDLMWKFFIIPNHG---MNGFYVEDTFPNMIAEAGVD------------------QQPNYLAPLDPAA--DCPAQDMLQWN-LPPT---------GYQN--GIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALK--ANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFCEDGAFND 1233
RRLPP C Q P +K C+Q+ C P + G+ +H+ R+C+ PR ++ + +++ KTKE + D QCGE TFE FD A AGG ++ + P G YVED FPN+ Q + A A DC A W+ L P G +N I + +P C PG W ++V H+ + AADLH NLQ+G+G + YLG D ++AE LK A T AA YW F+ +T ++ G Y+ F+ P + ++ +PGGWK L +E+YL+++ C+ A +D
Sbjct: 960 RRLPPNADEVCKQAPEAPEIKKVTTGCVQITCKPDAIGIGEPYHLTARWCVDMPRPLYVRYDIINTKTKELISTVDHMVAGEDANHQCGEHTFEQKFDPAYPAGAGGGPAVLTPYNFAHIVYAAPVWGDPAQPDGYVEDAFPNVXXXXXXXXXXXXXXXXXXXXXXXXAQDVFFFADYGGATEGDCNAVPDRSWDVLEPVPGLGAAADAGVKNVDAINFPAVPDCITPGENWDLKVQAHVASLPAADLHVNLQLGTGPNGYLGAKDAYVAEANAFGLKKAAPDATPDDAA----YWDNVVSGFSPLQTRNLKAGDTPYIVAFLVPPGSEYDATIPGGWKTLAKEYYLSLELCDAAADDD 1314
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835ZEH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH4_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.440e-26 Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 1201 MQFCEDGAFNDLDGDGAEDVPTDYDLDGDGTVDGEMAQPNXXXXXXXXXGIAAEQDHNADLIPDVDLNKDGIVDDLDGNGVPEIIPPVIYGPEGDAVVPP 1500
MQFC+ A D + DG +DVPTDYDL+GDGTVDG+ QPN G+AAE+DHNAD I D D N DGIVDDL+G+G +I P ++YGPE +PP
Sbjct: 1 MQFCDANAIVDANADGIDDVPTDYDLNGDGTVDGQAPQPNPNFIDLNGDGVAAEEDHNADGIADADSNGDGIVDDLNGDGAADIAPAIVYGPEALTALPP 100
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Match: A0A835YTA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA3_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.150e-7 Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 1
Query: 937 DIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKLVPGGWKILEREFYLAMQFC 1212
DIY+ +DEF L N K G WT + FTA ETA ++ + Y++ + P A FN +PGGW+IL+RE+ L +Q C
Sbjct: 6 DIYIAESDEF-------GLTRNAK---------GDWTRHLMKFTAKETAQLDGYTTPYIAALLVPAGAQFNPKIPGGWRILDREYMLQLQIC 81 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352523 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13924 ID=mRNA_13924|Name=jgi.p|Trimin1|352523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2867bp|location=Sequence derived from alignment at Contig_122:212733..222644- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGCACGCGCAGTCACCATGAAGGGTGCAGCAGCATGTACGGCCCTGCTback to top protein sequence of jgi.p|Trimin1|352523 >Trimin1|352523|estExt_Genemark1.C_Ctg_1220026 ID=Trimin1|352523|estExt_Genemark1.C_Ctg_1220026|Name=jgi.p|Trimin1|352523|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=663bp MKGAAACTALLATLLCGHAAPGDPVLPQMPLQQPAQPVQPVQPVQQPPQLback to top mRNA from alignment at Contig_122:212733..222644- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13924 ID=mRNA_13924|Name=jgi.p|Trimin1|352523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9912bp|location=Sequence derived from alignment at Contig_122:212733..222644- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_122:212733..222644- >mRNA_13924 ID=mRNA_13924|Name=jgi.p|Trimin1|352523|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1989bp|location=Sequence derived from alignment at Contig_122:212733..222644- (Tribonema minus UTEX_B_3156 )back to top |