Trimin1|352506|estExt_Genemark1.C_Ctg_1220003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352506
Unique NameTrimin1|352506|estExt_Genemark1.C_Ctg_1220003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length338
Homology
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A835ZAJ0_9STRA (Survival motor neuron interacting protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ0_9STRA)

HSP 1 Score: 556 bits (1433), Expect = 3.030e-198
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI 337
            MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI
Sbjct:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI 337          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A6H5K160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K160_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.110e-21
Identity = 62/155 (40.00%), Postives = 78/155 (50.32%), Query Frame = 0
Query:   16 EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTAD-PSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAE 169
            E+  R K G PP SAEEYLLRVR E+  +P VV A  P V +                      + Y+P  EPV  C + LL ++EWERE L+ FVD+RQY+  W +    S               S +R  VPALKD  GWHI+CLG A+  E
Sbjct:   22 EVRRRMKQGVPPESAEEYLLRVRIESSDLPAVVEAHVPDVLKK-------------------KQTVYMPSTEPVPACPEYLLPSEEWEREVLSTFVDLRQYMRRWKATAAVS---------------SAERQPVPALKDSTGWHIFCLGYADQEE 142          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A1E7F562_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F562_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.860e-17
Identity = 86/306 (28.10%), Postives = 121/306 (39.54%), Query Frame = 0
Query:   28 LSAEEYLLRVRYEAEGIPDVVTADPSVT----------ETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSL------LAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCP-EGNPPSTALLLQLDQVAVIRVLTH--HAGWLRWRSLSNARAAWLYALLARLEKP 314
            + A +YL+RV+ E++GIPD+V A  + +          +T   + S S               Y+      +T   SL      +  +EW +  +  F  +R YL    +QGVG K                 R+ +P +KD   WHI+C+G  E +               G TEG                  + GEE   EG+ E                D+ IE       EE +     W    P +G  P   LLLQ+DQV + RVL+H  H   L W   +  RA W+YALLARLEKP
Sbjct:   45 MDANDYLIRVKLESKGIPDIVVATSNQSSNNEKVDTQSDTTSRESSVSQSYHVPIDGSAASVLYLLSRHASLTPPPSLQHLPLTIDVNEWTKSIILNFESLRGYLERCKAQGVGGKQT--------------NRIPLPTMKDRASWHIFCVGSDEAS---------------GNTEG------------------YYGEEYDREGDNE-------------QKQDKKIEQYSLLEEEEQQH---PWKINLPTDGYEPKVRLLLQMDQVMIRRVLSHLTHYVHLGWSIRTGRRAEWIYALLARLEKP 287          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A4D9CMH0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMH0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.370e-16
Identity = 103/365 (28.22%), Postives = 147/365 (40.27%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRD---EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQ-GVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVA-----EGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQG-GFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAW------------GLDWLERCP---------------------------EG-NPPSTALLLQLDQVAVIRVLTHHAGWL-RWRSLSNARAAWLYALLARLEKP 314
            M+  LP+ +D+ + D   EI +R   GEPPLSAEEYLLRVR E   +P++V A      T  S+ +A                Y+P    +      L  + EWE   L  F D+R+ L     + GVG +                ++++VP L++E  W I+  G  E        G + + P   +GE G  E    EI +GE   +  +G G +G+E    G        G            + +AE   P+                  GL                                  EG  PP T+L+LQ DQV  +R+L +HA WL    SL  ++ AWLYALLARL +P
Sbjct:    2 MQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTFDSRQTA----------------YMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRE----------------RKIKVPPLREEGSWRIFFFGRTERGADPNGRGVKRKKPTRRSGEGGEDE----EIGEGETNGEGKEGNGKQGKEDEYPGR-------GQQDEEPQSRPSATEQAEASPPSXXXXXXXXXXXXXXXXXXGLSSXXXXXXXXXXXXXXXXXXRPLPVSVTVPPMLFEGPTPPKTSLVLQFDQVCTVRLLGYHAHWLDSTSSLKYSQGAWLYALLARLSQP 323          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A2D4C5B0_PYTIN (CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5B0_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 2.760e-11
Identity = 51/163 (31.29%), Postives = 67/163 (41.10%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLG 163
            M   LPV D+    + IL R K G PP   +EYL RVR EAEGIPDVV A          + +A+             +   P +EP          ADEW +  LA F ++RQ +  W   G  +                  R  VP + D+ GWH +  G
Sbjct:    2 MAAALPVDDESVDVEAILQRMKQGIPPADVQEYLWRVRLEAEGIPDVVVATNVDPRQYDVKQTANMPAIDAFE-----AVVDPAMEP----------ADEWRQNLLAEFAELRQLIARWQEIGPPNVESDATDPSQAVPL----RTNVPRMNDQDGWHTFFFG 145          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A8K1FA67_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA67_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 2.810e-11
Identity = 54/170 (31.76%), Postives = 76/170 (44.71%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTAD--PSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVA 168
            M   LPV ++      IL R + G PP   +EYL RVR EAEGIP+VV +D  P   +T  + +  +                +P L  V   + +LL  DEW+   LA F ++RQ +  W  Q +G              K +  R  VP + DE GW  +  G A V+
Sbjct:    2 MAAALPVDEETVDVQAILRRMQQGLPPADVQEYLWRVRIEAEGIPNVVVSDVDPRQYDTKQTANMPA----------------MPDLRHV--SNNALLPTDEWKENLLADFAELRQLIARW--QELGPPENEPSLEDNAVLKRA-LRTAVPRMNDEDGWRTFFFGKAPVS 150          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: W7T2W3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2W3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.190e-10
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRD---EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQ-GVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAE 166
            M+  LP+ +D+ + D   EI +R   GEPPLSAEEYLLRVR E   +P++V A      T  S+ +A                Y+P    +      L  + EWE   L  F D+R+ L     + GVG +                ++++VP L++E  W I+  G  E
Sbjct:    2 MQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTA----------------YMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRE----------------RKIKVPPLREEGSWRIFFFGRTE 139          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A662WVK0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVK0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.100e-10
Identity = 53/169 (31.36%), Postives = 72/169 (42.60%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRDE-ILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADE-WEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEV 167
            M  VLPV  +D      I+ R + G PP   +EYL RVR EAEGIPDVV A         +Q + +                +PRL+   T + +    DE W+RE LA F ++RQ +  W   G                     R +VP + DE GW  +  G A+ 
Sbjct:    2 MAAVLPVESEDAVDVRAIVRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAADIDPRRFDAQQTRN----------------MPRLQAFGTTTPADRLPDEVWKRELLADFAELRQLIARWEVVGPPKAEAAREGEAPSLVL----RTQVPRMSDEDGWLAFFFGKADA 150          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A225WKV8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKV8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-8
Identity = 45/164 (27.44%), Postives = 68/164 (41.46%), Query Frame = 0
Query:    1 MEPVLPVYDDDFTRDEILA-RAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLG 163
            M   LPV  +     +++  R + G PP   +EYL RVR EAEGIPDVV A         ++ +++                IP               ++W+RE LA F ++RQ +  W + G                 +   R +VP + DE+GW  +C G
Sbjct:    2 MAAALPVEGEGAVDVQLIRHRMQQGLPPQDVQEYLWRVRIEAEGIPDVVVAPDVNPRQFDARQTSNMPKLQTFGLEETDPERIPN--------------EKWKRELLADFAELRQLITRWEAIG----PPKAETVNNGDIPQEILRTKVPRMSDEEGWIAFCFG 147          
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A7S1ZA84_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZA84_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.070e-8
Identity = 57/170 (33.53%), Postives = 75/170 (44.12%), Query Frame = 0
Query:  148 VPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPE-GNPPSTALLLQLDQVAVIRVLTHHAGWL--RWRSLSNARAAWLYALLARLEKP 314
            VP +KD   WH +CLG  E              G  GG      ++ED +    E     E  E ++EG ++               G + ++   D   ++       W E  P  G+PPS  LL QLDQV   RVL HHA +L      LS+ R AWLY LLARL+KP
Sbjct:  161 VPTMKDGARWHEFCLGKDEAM------------GNAGGYFDDDEDVED-DSGCDEDGDEMEEVENMIEGNDD------------DEMGSDEVDKNYDNDDDK-------WRENIPRRGHPPSVQLLCQLDQVMTRRVLMHHARFLVEEGYDLSSTRGAWLYGLLARLDKP 298          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAJ0_9STRA3.030e-198100.00Survival motor neuron interacting protein 1-domain... [more]
A0A6H5K160_9PHAE8.110e-2140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7F562_9STRA5.860e-1728.10Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A4D9CMH0_9STRA4.370e-1628.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4C5B0_PYTIN2.760e-1131.29CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 ... [more]
A0A8K1FA67_PYTOL2.810e-1131.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7T2W3_9STRA1.190e-1030.59Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A662WVK0_9STRA5.100e-1031.36Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A225WKV8_9STRA1.470e-827.44Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A7S1ZA84_9STRA3.070e-833.53Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.1070coord: 97..320
e-value: 7.1E-22
score: 80.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..251
NoneNo IPR availablePANTHERPTHR12794GEMIN2coord: 25..314
NoneNo IPR availablePANTHERPTHR12794:SF0GEM-ASSOCIATED PROTEIN 2coord: 25..314
IPR035426Gemin2/Brr1PFAMPF04938SIP1coord: 25..314
e-value: 4.4E-29
score: 101.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:4919..8640 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352506mRNA_13897Tribonema minus UTEX_B_3156 mRNAContig_122 4919..8640 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352506|estExt_Genemark1.C_Ctg_1220003 ID=Trimin1|352506|estExt_Genemark1.C_Ctg_1220003|Name=jgi.p|Trimin1|352506|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=338bp
MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTA
DPSVTETVGSQHSASSSSAAAAAVAAAASTYIPRLEPVVTCSKSLLAADE
WEREALAAFVDIRQYLVYWASQGVGSKYLVYWTSQGVGSKESGQRVEVPA
LKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAEGEIEDGELEL
QEAQGGFEGEERVLEGEEEGGGTGGLGGAEGGGEGDESIEAEGDAPAEEA
RAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNAR
AAWLYALLARLEKPAPLARLEKSASAPRREKAQMIGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035426Gemin2/Brr1