mRNA_13897 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352506
Unique NamemRNA_13897
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A835ZAJ0_9STRA (Survival motor neuron interacting protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ0_9STRA)

HSP 1 Score: 556 bits (1433), Expect = 3.030e-198
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI 1011
            MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI
Sbjct:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNARAAWLYALLARLEKPAPLXXXXXXXXXXXXXKAQMIGI 337
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A6H5K160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K160_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.110e-21
Identity = 62/155 (40.00%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   46 EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTAD-PSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAE 507
            E+  R K G PP SAEEYLLRVR E+  +P VV A  P V +                      + Y+P  EPV  C + LL ++EWERE L+ FVD+RQY+  W +    S               S +R  VPALKD  GWHI+CLG A+  E
Sbjct:   22 EVRRRMKQGVPPESAEEYLLRVRIESSDLPAVVEAHVPDVLKK-------------------KQTVYMPSTEPVPACPEYLLPSEEWEREVLSTFVDLRQYMRRWKATAAVS---------------SAERQPVPALKDSTGWHIFCLGYADQEE 142
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A1E7F562_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F562_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.860e-17
Identity = 86/306 (28.10%), Postives = 121/306 (39.54%), Query Frame = 1 
Query:   82 LSAEEYLLRVRYEAEGIPDVVTADPSVT----------ETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSL------LAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCP-EGNPPSTALLLQLDQVAVIRVLTH--HAGWLRWRSLSNARAAWLYALLARLEKP 942
            + A +YL+RV+ E++GIPD+V A  + +          +T   + S S               Y+      +T   SL      +  +EW +  +  F  +R YL    +QGVG K                 R+ +P +KD   WHI+C+G  E +               G TEG                  + GEE   EG+ E                D+ IE       EE +     W    P +G  P   LLLQ+DQV + RVL+H  H   L W   +  RA W+YALLARLEKP
Sbjct:   45 MDANDYLIRVKLESKGIPDIVVATSNQSSNNEKVDTQSDTTSRESSVSQSYHVPIDGSAASVLYLLSRHASLTPPPSLQHLPLTIDVNEWTKSIILNFESLRGYLERCKAQGVGGKQT--------------NRIPLPTMKDRASWHIFCVGSDEAS---------------GNTEG------------------YYGEEYDREGDNE-------------QKQDKKIEQYSLLEEEEQQH---PWKINLPTDGYEPKVRLLLQMDQVMIRRVLSHLTHYVHLGWSIRTGRRAEWIYALLARLEKP 287
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A4D9CMH0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMH0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.370e-16
Identity = 103/365 (28.22%), Postives = 147/365 (40.27%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRD---EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQ-GVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVA-----EGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQG-GFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAW------------GLDWLERCP---------------------------EG-NPPSTALLLQLDQVAVIRVLTHHAGWL-RWRSLSNARAAWLYALLARLEKP 942
            M+  LP+ +D+ + D   EI +R   GEPPLSAEEYLLRVR E   +P++V A      T  S+ +A                Y+P    +      L  + EWE   L  F D+R+ L     + GVG +                ++++VP L++E  W I+  G  E        G + + P   +GE G  E    EI +GE   +  +G G +G+E    G        G            + +AE   P+                  GL                                  EG  PP T+L+LQ DQV  +R+L +HA WL    SL  ++ AWLYALLARL +P
Sbjct:    2 MQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTFDSRQTA----------------YMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRE----------------RKIKVPPLREEGSWRIFFFGRTERGADPNGRGVKRKKPTRRSGEGGEDE----EIGEGETNGEGKEGNGKQGKEDEYPGR-------GQQDEEPQSRPSATEQAEASPPSXXXXXXXXXXXXXXXXXXGLSSXXXXXXXXXXXXXXXXXXRPLPVSVTVPPMLFEGPTPPKTSLVLQFDQVCTVRLLGYHAHWLDSTSSLKYSQGAWLYALLARLSQP 323
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A2D4C5B0_PYTIN (CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5B0_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 2.760e-11
Identity = 51/163 (31.29%), Postives = 67/163 (41.10%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLG 489
            M   LPV D+    + IL R K G PP   +EYL RVR EAEGIPDVV A          + +A+             +   P +EP          ADEW +  LA F ++RQ +  W   G  +                  R  VP + D+ GWH +  G
Sbjct:    2 MAAALPVDDESVDVEAILQRMKQGIPPADVQEYLWRVRLEAEGIPDVVVATNVDPRQYDVKQTANMPAIDAFE-----AVVDPAMEP----------ADEWRQNLLAEFAELRQLIARWQEIGPPNVESDATDPSQAVPL----RTNVPRMNDQDGWHTFFFG 145
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A8K1FA67_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA67_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 2.810e-11
Identity = 54/170 (31.76%), Postives = 76/170 (44.71%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTAD--PSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEVA 504
            M   LPV ++      IL R + G PP   +EYL RVR EAEGIP+VV +D  P   +T  + +  +                +P L  V   + +LL  DEW+   LA F ++RQ +  W  Q +G              K +  R  VP + DE GW  +  G A V+
Sbjct:    2 MAAALPVDEETVDVQAILRRMQQGLPPADVQEYLWRVRIEAEGIPNVVVSDVDPRQYDTKQTANMPA----------------MPDLRHV--SNNALLPTDEWKENLLADFAELRQLIARW--QELGPPENEPSLEDNAVLKRA-LRTAVPRMNDEDGWRTFFFGKAPVS 150
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: W7T2W3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2W3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.190e-10
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRD---EILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQ-GVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAE 498
            M+  LP+ +D+ + D   EI +R   GEPPLSAEEYLLRVR E   +P++V A      T  S+ +A                Y+P    +      L  + EWE   L  F D+R+ L     + GVG +                ++++VP L++E  W I+  G  E
Sbjct:    2 MQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTA----------------YMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRE----------------RKIKVPPLREEGSWRIFFFGRTE 139
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A662WVK0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVK0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.100e-10
Identity = 53/169 (31.36%), Postives = 72/169 (42.60%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRDE-ILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADE-WEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLGCAEV 501
            M  VLPV  +D      I+ R + G PP   +EYL RVR EAEGIPDVV A         +Q + +                +PRL+   T + +    DE W+RE LA F ++RQ +  W   G                     R +VP + DE GW  +  G A+ 
Sbjct:    2 MAAVLPVESEDAVDVRAIVRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAADIDPRRFDAQQTRN----------------MPRLQAFGTTTPADRLPDEVWKRELLADFAELRQLIARWEVVGPPKAEAAREGEAPSLVL----RTQVPRMSDEDGWLAFFFGKADA 150
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A225WKV8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKV8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-8
Identity = 45/164 (27.44%), Postives = 68/164 (41.46%), Query Frame = 1 
Query:    1 MEPVLPVYDDDFTRDEILA-RAKLGEPPLSAEEYLLRVRYEAEGIPDVVTADPSVTETVGSQHSASXXXXXXXXXXXXXSTYIPRLEPVVTCSKSLLAADEWEREALAAFVDIRQYLVYWASQGVGSKXXXXXXXXXXXXKESGQRVEVPALKDEQGWHIYCLG 489
            M   LPV  +     +++  R + G PP   +EYL RVR EAEGIPDVV A         ++ +++                IP               ++W+RE LA F ++RQ +  W + G                 +   R +VP + DE+GW  +C G
Sbjct:    2 MAAALPVEGEGAVDVQLIRHRMQQGLPPQDVQEYLWRVRIEAEGIPDVVVAPDVNPRQFDARQTSNMPKLQTFGLEETDPERIPN--------------EKWKRELLADFAELRQLITRWEAIG----PPKAETVNNGDIPQEILRTKVPRMSDEEGWIAFCFG 147
[Close]
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Match: A0A7S1ZA84_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZA84_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.070e-8
Identity = 57/170 (33.53%), Postives = 75/170 (44.12%), Query Frame = 1 
Query:  442 VPALKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAXXEIEDGELELQEAQGGFEGEERVLEGEEEGGGTGGLGXXXXXXXGDESIEAEGDAPAEEARAWGLDWLERCPE-GNPPSTALLLQLDQVAVIRVLTHHAGWL--RWRSLSNARAAWLYALLARLEKP 942
            VP +KD   WH +CLG  E              G  GG      ++ED +    E     E  E ++EG ++               G + ++   D   ++       W E  P  G+PPS  LL QLDQV   RVL HHA +L      LS+ R AWLY LLARL+KP
Sbjct:  161 VPTMKDGARWHEFCLGKDEAM------------GNAGGYFDDDEDVED-DSGCDEDGDEMEEVENMIEGNDD------------DEMGSDEVDKNYDNDDDK-------WRENIPRRGHPPSVQLLCQLDQVMTRRVLMHHARFLVEEGYDLSSTRGAWLYGLLARLDKP 298
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352506 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAJ0_9STRA3.030e-198100.00Survival motor neuron interacting protein 1-domain... [more]
A0A6H5K160_9PHAE8.110e-2140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7F562_9STRA5.860e-1728.10Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A4D9CMH0_9STRA4.370e-1628.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4C5B0_PYTIN2.760e-1131.29CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 ... [more]
A0A8K1FA67_PYTOL2.810e-1131.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7T2W3_9STRA1.190e-1030.59Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A662WVK0_9STRA5.100e-1031.36Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A225WKV8_9STRA1.470e-827.44Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A7S1ZA84_9STRA3.070e-833.53Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:4919..8640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352506|estExt_Genemark1.C_Ctg_1220003
BRITEko00000,ko00001,ko00002,ko03041
KEGG ModuleM00426
KEGG Pathwayko03013,map03013
KEGG koko:K13130
DescriptionSurvival motor neuron (SMN) interacting protein 1 (SIP1)
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs28H7D@1|root,2QPK4@2759|Eukaryota,3Q7JH@4776|Peronosporales
Evalue1.09e-10
Seed ortholog325452.fgenesh_scip_prom.46568.5032
Hectar predicted targeting categoryother localisation
TranscriptId352828
TrackFilteredModels1
ProteinId352506
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352506gene_13897Tribonema minus UTEX_B_3156 geneContig_122 4919..8640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352506Trimin1|352506|estExt_Genemark1.C_Ctg_1220003Tribonema minus UTEX_B_3156 polypeptideContig_122 4919..8640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13897_7exon_13897_7Tribonema minus UTEX_B_3156 exonContig_122 4919..4950 -
exon_13897_6exon_13897_6Tribonema minus UTEX_B_3156 exonContig_122 5357..5396 -
exon_13897_5exon_13897_5Tribonema minus UTEX_B_3156 exonContig_122 5517..5679 -
exon_13897_4exon_13897_4Tribonema minus UTEX_B_3156 exonContig_122 6099..6457 -
exon_13897_3exon_13897_3Tribonema minus UTEX_B_3156 exonContig_122 7293..7331 -
exon_13897_2exon_13897_2Tribonema minus UTEX_B_3156 exonContig_122 7481..7748 -
exon_13897_1exon_13897_1Tribonema minus UTEX_B_3156 exonContig_122 8528..8640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13897CDS_13897Tribonema minus UTEX_B_3156 CDSContig_122 8528..8640 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13897 ID=mRNA_13897|Name=jgi.p|Trimin1|352506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1014bp|location=Sequence derived from alignment at Contig_122:4919..8640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCTGTGCTGCCGGTGTACGACGATGATTTCACCAGGGACGAGAT
CCTCGCCAGGGCGAAGCTAGGCGAGCCGCCTCTGAGCGCGGAGGAGTACT
TGCTCAGGGTCAGATATGAGGCGGAGGGCATCCCTGACGTCGTAACCGCC
GACCCGTCCGTAACTGAAACTGTCGGCAGCCAGCACAGCGCCAGCAGCAG
CAGCGCCGCCGCCGCCGCCGTCGCCGCTGCCGCGTCGACCTACATACCCC
GGCTGGAGCCTGTTGTGACGTGCAGCAAGTCGCTGCTGGCGGCGGACGAG
TGGGAGCGGGAGGCGCTGGCGGCGTTTGTGGACATCCGGCAGTACCTCGT
GTACTGGGCCAGCCAGGGCGTGGGGTCCAAGTACCTCGTGTACTGGACCA
GCCAGGGCGTGGGGTCCAAGGAATCGGGCCAGCGCGTCGAAGTCCCCGCG
CTCAAAGACGAGCAGGGCTGGCACATTTACTGCCTCGGCTGCGCGGAGGT
CGCAGAGGGCGACGAGACAGAGCCCCCTCTCCCTGAAACAGGGGAACAGG
GGGGCACCGAGGGGGCGGAGGGAGAGATTGAGGATGGCGAACTTGAACTT
CAGGAGGCGCAAGGGGGGTTTGAGGGGGAGGAGAGGGTGCTGGAGGGGGA
GGAGGAGGGGGGTGGCACGGGGGGTTTGGGGGGTGCGGAGGGGGGCGGGG
AGGGGGATGAGTCGATTGAGGCGGAGGGTGACGCTCCTGCGGAGGAGGCG
AGGGCGTGGGGCTTGGACTGGCTCGAAAGGTGTCCAGAGGGAAACCCGCC
GTCCACTGCGCTGCTACTTCAACTCGACCAGGTGGCGGTGATCCGCGTTC
TGACGCACCACGCGGGGTGGCTGCGGTGGCGCAGCCTGTCCAACGCGCGC
GCGGCGTGGCTCTACGCGCTGCTCGCGCGGCTCGAGAAGCCGGCGCCGCT
CGCGCGGCTCGAGAAGTCGGCGAGCGCACCCCGGCGCGAAAAAGCCCAGA
TGATTGGCATCTAG
back to top

protein sequence of jgi.p|Trimin1|352506

>Trimin1|352506|estExt_Genemark1.C_Ctg_1220003 ID=Trimin1|352506|estExt_Genemark1.C_Ctg_1220003|Name=jgi.p|Trimin1|352506|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=338bp
MEPVLPVYDDDFTRDEILARAKLGEPPLSAEEYLLRVRYEAEGIPDVVTA
DPSVTETVGSQHSASSSSAAAAAVAAAASTYIPRLEPVVTCSKSLLAADE
WEREALAAFVDIRQYLVYWASQGVGSKYLVYWTSQGVGSKESGQRVEVPA
LKDEQGWHIYCLGCAEVAEGDETEPPLPETGEQGGTEGAEGEIEDGELEL
QEAQGGFEGEERVLEGEEEGGGTGGLGGAEGGGEGDESIEAEGDAPAEEA
RAWGLDWLERCPEGNPPSTALLLQLDQVAVIRVLTHHAGWLRWRSLSNAR
AAWLYALLARLEKPAPLARLEKSASAPRREKAQMIGI*
back to top

mRNA from alignment at Contig_122:4919..8640-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13897 ID=mRNA_13897|Name=jgi.p|Trimin1|352506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3722bp|location=Sequence derived from alignment at Contig_122:4919..8640- (Tribonema minus UTEX_B_3156 )
ATGGAGCCTGTGCTGCCGGTGTACGACGATGATTTCACCAGGGACGAGAT
CCTCGCCAGGGCGAAGCTAGGCGAGCCGCCTCTGAGCGCGGAGGAGTACT
TGCTCAGGGTCAGGTGCGTTTCTGATAGAGAGTGTTGGCCGTCGCAAGCG
AGCACAAAGGAAGCTTGCTAGCAGAAAAAGAGGATCAGGAACATTAGTTG
AAGTACCAGACCTACAGCCTTGCACACCTTCACTGGGTACATGCATGTTG
AGACCAGTCTGCGAGCATTGGTCACCGATCGCCGATAGCATCACGTTCTC
CCTTGCTTTTACGCTCGCTGGCCTCTATGGCGCAAATCAGAAGGTTGTGG
CACGCGGTGAACTCGACGACATCCAGCACATGTTGGCTGCACAGGGGTGC
ATTTGCTCTGTTCAACTCATCAACGATCAGCATAATGACCTGGCACATTT
TCCAATTTAAGCAGCACGCAGCACCTGCTTTGGAAACTACCTGATGTTGT
ATGCTTGTTCAGCACCCTTTCATCACGTGCACACGATTTGTGCAACACTC
CCAGAGCTGCCAACCACCGACACACACAGAAAACCACTGGCGAGTGTGCA
ACGTAGCCTTGTACAAGAAGTGTGGAGCAATGCACAAACTGGGTGTGCTC
ATCATACTGATTATAACAGTACAACCAGACACCCGTTCATTGCGCTGCCA
CAGCAGCCACGCAAGCGTTCTTGCATCAATACTTGCATACGGCAGTAAAC
TTTGTTGCTGTCCCTGTATCGCTGAACAGGCACACCCTCTTTGGCAGTTG
TGGAATGCAACTTCTGGCACTGGTGTTGAAGTTGACCACAAGCAGCACTC
CGCTGCTCCCACCCCTCGCACCAACCCCCTCACGCACTGCAGATATGAGG
CGGAGGGCATCCCTGACGTCGTAACCGCCGACCCGTCCGTAACTGAAACT
GTCGGCAGCCAGCACAGCGCCAGCAGCAGCAGCGCCGCCGCCGCCGCCGT
CGCCGCTGCCGCGTCGACCTACATACCCCGGCTGGAGCCTGTTGTGACGT
GCAGCAAGTCGCTGCTGGCGGCGGACGAGTGGGAGCGGGAGGCGCTGGCG
GCGTTTGTGGACATCCGGCAGTACCTCGTGTACTGGGCCAGCCAGGGCGT
GGGGTCCAAGGTACGCTGCTCAACTGCAAACTTCAAATAGGTAAACTTCA
AGTTGGCAGTCTGTGAAGAGTGTGTGACATTGATATGATTCAACATGAAG
AAAGTATACTTCGAAGTATACAGTCTAGTGACAGTTTTCACAGCATGGTC
ATTCGGCAGTACCTCGTGTACTGGACCAGCCAGGGCGTGGGGTCCAAGGT
ACGCTGCAGCTTCAAGTACAAACTTCAAGTTGGCAGTCATCTTGGCAAAA
CATGCAACACTTTGATGTGGTACAGCATGTCGATAGTATACATTGCAGTG
GTAGATTGCGCAGCAGCATGGCGAGTACAAGGCGTGTCAGATGCAAGGTC
CGTATTGCACCTGTGGCGCGGCCACGAACGCGCCCCATAGTTGCACCTGG
CTTGCTCTCTGTTTTAACTGCCATGCGTAACTGCTGCCAGTATCGGGTCC
CTCCAGCCTCTGCTGGCCTTCACCACCTGCAGCCACAAGCTGGGTGCATA
CACAGCCACTGCGCACAGCACGCTCTTTGCTGTGTTGTGCGCCGCAGCCC
CAAGGTTTCAGTTCTGCGTATATGCGTGGCACACCGCACCGGTCGCCGCC
ACAACTGCCAAGCAGTCTCGCGCTCTTCAAGTTCCGGCAAGTAGATTATC
ACAGATATGTGCAGCCTTGCAGGCGCTGTCACCGCCAACACAGGTCAAAA
CAGCAGCCTCGATCTCTCCTCGCCCTGTCCCATTCTGGCACAGCTGTTGT
CACACGTGTGTACGTATGTATACATCAAAGTTCGCTGAATACCTCAAGGA
CGCTTCTTGGGAATGTGTACATACATGCGAGCTAATGTGCGGCATGGTTT
CCGTCTCAGACAAGTCTGTTGTCACGCACACACACACAGGCACCCCCCCC
CCCCCCCCCCCCCCCCCCTACACACACACGCACACACACACACCCCAAGA
TCAAGTGCACGCTTTCTGGGAATATGTAGATACATGCGAGCTCACCGCGT
GCACACATCGCCCTAACCAACATAACGTCTCAGGAATCGGGCCAGCGCGT
CGAAGTCCCCGCGCTCAAAGACGAGCAGGGCTGGCACATTTACTGCCTCG
GCTGCGCGGAGGTCGCAGAGGGCGACGAGACAGAGCCCCCTCTCCCTGAA
ACAGGGGAACAGGGGGGCACCGAGGGGGCGGAGGGAGAGATTGAGGATGG
CGAACTTGAACTTCAGGAGGCGCAAGGGGGGTTTGAGGGGGAGGAGAGGG
TGCTGGAGGGGGAGGAGGAGGGGGGTGGCACGGGGGGTTTGGGGGGTGCG
GAGGGGGGCGGGGAGGGGGATGAGTCGATTGAGGCGGAGGGTGACGCTCC
TGCGGAGGAGGCGAGGGCGTGGGGCTTGGACTGGCTCGAAAGGTGAGCAA
ATTTGAATTGCGGCAAGCGTTTTGATTGCCAGATATGGACACCTGCATCC
TCATGCACCAAAGCATACACCCACACTCAACGAGAGTGTTGTATATTGTG
CAGCATATGCGTGCAGGATGGGCACCATCACCAACAGCCCTACATGCATA
CCCCGCCGAATGTGGTCAAACGGTGACTGTCGTCATCATCAAGGGTTTGA
AGCCCCTCCCTCTTTAGACAGTGCTGCTCTTTCAGCATGACCGCTATGTT
GCAGTGGCCCACTTGCACACTTCTTGAGCTTTCTCCGCCAAAGTAGAGTC
ATGGTGTCAGATCCTTAGCACCGCTTGTCCGACGTAAACGTAAACGTCAA
ATGTAGTACTTGACCCACATGAACTTCAAGTACCTGCTGCCTGTCCCGCC
ATGCACCGCAGGTGTCCAGAGGGAAACCCGCCGTCCACTGCGCTGCTACT
TCAACTCGACCAGGTGGCGGTGATCCGCGTTCTGACGCACCACGCGGGGT
GGCTGCGGTGGCGCAGCCTGTCCAACGCGCGCGCGGCGTGGCTCTACGCG
CTGCTCGCGCGGCTCGAGAAGCCGGTGAGCAAACCTCGTGATACATACAT
ACTGCCTTCATGACAAAGTATGACATGTATACCCTCTTCATGCCAAAGTA
GCGCATGCTGAAACGCCGTCTGTCGCTCCTTACCGTGGCTCTAGGCGCCG
CTCGCGCGGCTCGAGAAGTCGGCGAGCGCACCCCGTGATACATACATACC
CCCTTCATGCCAAAGTATGACATACATACCCCCTTCGTACAAATTGCAGC
CGCGCTGCGCACCCGTGATACATACATACCCCCTAGACGTCAAGTGGTGC
ATGCTGAAATGCCACCTCTCGCTCCTTGCCGTTCGCACTCCATGATACAT
GCGTGTACCCTTGATGCCAGGTAGCGTATGCTGAAACGCCATCGGGGCAT
TTGGCAGCAGGCGGTGGCGCTGATGATACGCAGGGAGTGCTGAGGGTTGT
GGAGACACCGAGAACGCACTCATGCTGCCGTTGATAGTGTCATGTCATCC
CATATCTCTCTTTTTCAACTTTGAGCCCTCTTTCTCGGTACAGCACGCCT
CCTTTGACTAGCACTGTACTTTTTATTAATTCTCGCTCAGGGCGCGAAAA
AGCCCAGATGATTGGCATCTAG
back to top

Coding sequence (CDS) from alignment at Contig_122:4919..8640-

>mRNA_13897 ID=mRNA_13897|Name=jgi.p|Trimin1|352506|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1014bp|location=Sequence derived from alignment at Contig_122:4919..8640- (Tribonema minus UTEX_B_3156 )
ATGGAGCCTGTGCTGCCGGTGTACGACGATGATTTCACCAGGGACGAGAT
CCTCGCCAGGGCGAAGCTAGGCGAGCCGCCTCTGAGCGCGGAGGAGTACT
TGCTCAGGGTCAGATATGAGGCGGAGGGCATCCCTGACGTCGTAACCGCC
GACCCGTCCGTAACTGAAACTGTCGGCAGCCAGCACAGCGCCAGCAGCAG
CAGCGCCGCCGCCGCCGCCGTCGCCGCTGCCGCGTCGACCTACATACCCC
GGCTGGAGCCTGTTGTGACGTGCAGCAAGTCGCTGCTGGCGGCGGACGAG
TGGGAGCGGGAGGCGCTGGCGGCGTTTGTGGACATCCGGCAGTACCTCGT
GTACTGGGCCAGCCAGGGCGTGGGGTCCAAGTACCTCGTGTACTGGACCA
GCCAGGGCGTGGGGTCCAAGGAATCGGGCCAGCGCGTCGAAGTCCCCGCG
CTCAAAGACGAGCAGGGCTGGCACATTTACTGCCTCGGCTGCGCGGAGGT
CGCAGAGGGCGACGAGACAGAGCCCCCTCTCCCTGAAACAGGGGAACAGG
GGGGCACCGAGGGGGCGGAGGGAGAGATTGAGGATGGCGAACTTGAACTT
CAGGAGGCGCAAGGGGGGTTTGAGGGGGAGGAGAGGGTGCTGGAGGGGGA
GGAGGAGGGGGGTGGCACGGGGGGTTTGGGGGGTGCGGAGGGGGGCGGGG
AGGGGGATGAGTCGATTGAGGCGGAGGGTGACGCTCCTGCGGAGGAGGCG
AGGGCGTGGGGCTTGGACTGGCTCGAAAGGTGTCCAGAGGGAAACCCGCC
GTCCACTGCGCTGCTACTTCAACTCGACCAGGTGGCGGTGATCCGCGTTC
TGACGCACCACGCGGGGTGGCTGCGGTGGCGCAGCCTGTCCAACGCGCGC
GCGGCGTGGCTCTACGCGCTGCTCGCGCGGCTCGAGAAGCCGGCGCCGCT
CGCGCGGCTCGAGAAGTCGGCGAGCGCACCCCGGCGCGAAAAAGCCCAGA
TGATTGGCATCTAG
back to top