mRNA_13933 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175192
Unique NamemRNA_13933
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A835ZBS4_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS4_9STRA)

HSP 1 Score: 645 bits (1664), Expect = 2.350e-234
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1 
Query:    1 MTVVECTSALPYPDRPWEATLSIHGKHEFTIKKAPGSGFTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMGMDNVDDTELAAKYAEKAVSANKATGTWEDRDEVPLIGGYACTYVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNWAI 930
            MTVVECTSALPYPDRPWEATLSIHGKHEFTIKKAPGSGFTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMGMDNVDDTELAAKYAEKAVSANKATGTWEDRDEVPLIGGYACTYVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNWAI
Sbjct:    1 MTVVECTSALPYPDRPWEATLSIHGKHEFTIKKAPGSGFTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMGMDNVDDTELAAKYAEKAVSANKATGTWEDRDEVPLIGGYACTYVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNWAI 310
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: D8LEA1_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA1_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 2.360e-80
Identity = 142/301 (47.18%), Postives = 181/301 (60.13%), Query Frame = 1 
Query:   58 TLSIHGKHEFTIKKAPGSG-FTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMGMDNVDDTELAAKYAEKAVSANKATGTWEDRDEVPLIGGYACT------YVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETT---PYCERNSLNAFRGAAKQHNWAI 930
            TL +     FT+   PG G F  ST   FL D L++ENLEE  + A  ++ V+  A  VY CI+G                         D E A    +++    +    +ED D   ++ G A +          ANTRLMRDLSRLMR+DT  LGF+L+L +DD L  W + +FGF+DCPLAEDM +L+KE+ L+H+ L MKF +DYP+SPPF  +VYPRF R TGYI+DGAFC ELLT QGWTPTNDIE+V+VQ+R  MV G ARIDF+ T+   PY E  +  AFR AAK H WAI
Sbjct:   55 TLDLGKGKVFTLSGVPGRGPFCVSTVHPFLLDGLFVENLEEIQAQARRIQEVMSAAAEVYMCISGEXXXXXXXXXXXXXXXXXXXXXXXXDDEKA----KRSFPTQEGGSVFEDTDISQMLSGKAKSGAGAKSKAASANTRLMRDLSRLMRSDTKKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKRLEKEKHLDHVRLMMKFKDDYPFSPPFVHIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDFDATSVTQPYSEDRAKAAFRSAAKIHKWAI 351
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BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A7S3XWH9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWH9_HETAK)

HSP 1 Score: 222 bits (565), Expect = 5.880e-68
Identity = 122/276 (44.20%), Postives = 171/276 (61.96%), Query Frame = 1 
Query:  109 SGFTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMGMDNVDDTELAAKYAEKAVSANKAT-GTWEDRDEVPLIGGYACTYVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYI-LDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNWAI 930
            S F+  T D+FL DN +LEN+E+AVS A  VE VL      YK I     +  +    D EY  D G D  +D +     AE   + ++AT   W D  E+   GG+  T     N RLM DL+++MRTDT+ LGF+LE  ++D++  W  K+F F DC LA+D+V+LK+ + ++ +ELE++F  DYP+SPPF RVVYPRF   TG++ + G+ C ELLT  GWTPTNDIE++++Q+R  M+ G ARI+F    PY E  + +AF   A QH W+I
Sbjct:    6 SSFSVETSDEFLLDNFFLENIEDAVSEATAVEEVLCAISDTYKDITSGNEEGDNSANEDEEY--DYGSD--EDFK-----AEPPPTKDRATKDDWRDVAEIG--GGHGAT---AGNKRLMTDLAKIMRTDTTGLGFSLEPKNEDSMDRWVCKLFNFEDCALAQDLVQLKERKDIDFVELELQFKSDYPFSPPFIRVVYPRFKFHTGHVTIGGSICMELLTNSGWTPTNDIESILIQIRSEMIAGDARIEFRHDYPYDEAEARSAFTRVASQHGWSI 267
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: B8C5U5_THAPS (UBC core domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5U5_THAPS)

HSP 1 Score: 145 bits (366), Expect = 6.600e-36
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1 
Query:  457 RLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARI 846
            RL  DL ++M  DT   GF+LE   +D++  W +K+FGF  D  LA+D++ +     ++H+ELEM FP+DYP+ PPF RVV PRF RQTG++++GA C ELLTK GW P NDIE+VIV +R LMV G  R+
Sbjct:  325 RLASDLYKIMMADTDEAGFSLEPCDEDSMDKWCIKLFGFDCDSHLAKDLMVVG----MDHVELEMSFPDDYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTKDGWNPINDIESVIVSIRSLMVVGDGRL 451
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BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A2P6MUC2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MUC2_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 9.690e-36
Identity = 73/166 (43.98%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:  448 ANTRLMRDLSRLMRTDTSSLGFTLELVHD-----DNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYI-LDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNW 924
            A  RL+RDL  L   DT SLGF+ E   D     +NL  W++ +FGF     LA DM + +K  +   I +EM+F +DYPY+PPF RVV PRF  +TG++ + G+ C +LLT  GW  TNDIE++++Q+R  ++ G+AR+D   TTPY E+ + +AF+  A  H W
Sbjct:  552 ATMRLIRDLKSLNSGDTKSLGFSAEPTIDTRTGLENLYHWKITLFGFDPSSELANDMKRYEKTSQEAFITMEMRFSKDYPYAPPFVRVVKPRFAFRTGHVTIGGSICMDLLTNAGWASTNDIESILIQIRAELLSGNARLDEKNTTPYTEQEAWDAFKRVATSHGW 717
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A1Z5K8B1_FISSO (Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B1_FISSO)

HSP 1 Score: 141 bits (355), Expect = 1.100e-35
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 1 
Query:  457 RLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARID 849
            RL +DL R+M  DTS  GF+L    +D++  W +++F F  D  LA+DM  L     ++HIELEM FP+ YP+ PPF RVV PRF RQTG+++ GA C ELLTK GW P NDIE+VIV +R L+V G  R++
Sbjct:  159 RLAQDLYRIMNQDTSEAGFSLHPTAEDSMKHWTIELFQFDPDSNLAKDMKVLG----IDHIELEMTFPDQYPFEPPFVRVVKPRFKRQTGFVMSGALCMELLTKDGWNPVNDIESVIVSIRSLLVVGDGRLE 286
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A7R9YW98_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YW98_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.740e-35
Identity = 70/147 (47.62%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  457 RLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNA 894
            RL  DL ++M  DT   GF +E   +D++ LW +++F F  D  L++D++ L     L H+ELEM FP DYP+ PPF RVV PRF RQTG++++GA C ELLTK+GW P NDIE+VIV +R L+V G  R+      P  +R +L A
Sbjct:  314 RLAADLYKIMMADTDEAGFQIEPKSEDSMDLWTIRLFAFDEDSNLSKDLMVLG----LNHVELEMSFPGDYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTKEGWNPVNDIESVIVSIRSLLVVGDGRLQAAVDLPEKKREALLA 456
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BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: B7G7I5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7I5_PHATC)

HSP 1 Score: 142 bits (359), Expect = 4.080e-35
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:  457 RLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARID 849
            RL +DL R+M  DT+  GF+L+   +D++  W +K+F F  D  LA+DM+ L     LEHIELEM FPE YP+ PPF RV  PRF RQTG++++GA C ELLT +GW P NDIE+VIV +R L+V G  R++
Sbjct:  292 RLAQDLYRIMNQDTNKAGFSLKPSKEDSMERWTIKLFKFDEDSNLAKDMLVLG----LEHIELEMSFPEQYPFEPPFVRVSRPRFKRQTGFVMNGALCMELLTNEGWNPINDIESVIVSVRSLLVVGDGRLE 419
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A6B2LKV9_9EUKA (UBC core domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKV9_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 4.800e-35
Identity = 69/163 (42.33%), Postives = 102/163 (62.58%), Query Frame = 1 
Query:  460 LMRDLSRLMRTDTSSLGFTLELVHD-----DNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYI-LDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFRGAAKQHNWAI 930
            +++DL  + R D+ +LGFT E   D     +NL  W VK++   D PL  D+   +K+  ++++ELEM+F E YP++PPF RVV PRF  +TG++ + G+ C ELLT  GW  TNDIE++++Q+R  M  G+AR+D N    Y E  + +AF  AA  H W I
Sbjct:    1 MIKDLKSIKREDSKALGFTAEPRIDPAKNLENLYHWIVKLYF--DGPLGTDLQASQKKFGIDYVELEMRFSEHYPFTPPFVRVVRPRFQFRTGHVTIGGSICMELLTNSGWRSTNDIESILIQIRAEMQGGNARLDLNAGQSYSEHEAWDAFNRAAGAHGWDI 161
[Close]
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Match: A0A448Z8A8_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8A8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.550e-35
Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:  457 RLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFT-DCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARI 846
            RL +DL R+M  DT   GF+L    +D++  W +K+F F  D  LA+DM+ +     ++HI+LEMKFPE YP+ PPF RVV PRF RQTG++++GA C ELLTK GW P NDIE+VIV +R L+V G  R+
Sbjct:  270 RLAQDLYRIMNQDTEEAGFSLAPQTEDSMEKWTIKLFQFDPDSNLAKDMLVVG----IDHIKLEMKFPEQYPFEPPFVRVVNPRFKRQTGFVMNGALCMELLTKDGWNPINDIESVIVSVRSLLVVGDGRL 396
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175192 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBS4_9STRA2.350e-234100.00Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
D8LEA1_ECTSI2.360e-8047.18UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3XWH9_HETAK5.880e-6844.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C5U5_THAPS6.600e-3651.91UBC core domain-containing protein n=1 Tax=Thalass... [more]
A0A2P6MUC2_9EUKA9.690e-3643.98Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1Z5K8B1_FISSO1.100e-3551.52Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulif... [more]
A0A7R9YW98_9STRA1.740e-3547.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B7G7I5_PHATC4.080e-3552.27Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6B2LKV9_9EUKA4.800e-3542.33UBC core domain-containing protein n=1 Tax=Arcella... [more]
A0A448Z8A8_9STRA9.550e-3551.91UBC core domain-containing protein n=1 Tax=Pseudo-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:304581..309085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175192|e_gw1.122.105.1
BRITEko00000,ko00001,ko01000,ko03036,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10582,ko:K19362
EC2.3.2.23
GOsGO:0000003,GO:0000209,GO:0001967,GO:0002790,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0007154,GO:0007267,GO:0007275,GO:0007565,GO:0007566,GO:0007610,GO:0007617,GO:0007618,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009566,GO:0009914,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0016020,GO:0016567,GO:0016740,GO:0019098,GO:0019538,GO:0019787,GO:0019953,GO:0022414,GO:0023052,GO:0023061,GO:0030072,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0033036,GO:0036211,GO:0036477,GO:0040011,GO:0042886,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046879,GO:0046903,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051704,GO:0051705,GO:0061458,GO:0061631,GO:0061650,GO:0065007,GO:0065008,GO:0070459,GO:0070647,GO:0070936,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097458,GO:0140096,GO:1901564
Preferred nameUBE2Q1
Descriptionubiquitin conjugating enzyme activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0897@1|root,KOG0897@2759|Eukaryota
Evalue3.86e-81
Seed ortholog2880.D8LEA1
Hectar predicted targeting categoryother localisation
TranscriptId175514
TrackFilteredModels1
ProteinId175192
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175192gene_13933Tribonema minus UTEX_B_3156 geneContig_122 304581..309085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175192Trimin1|175192|e_gw1.122.105.1Tribonema minus UTEX_B_3156 polypeptideContig_122 304581..309085 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13933_4exon_13933_4Tribonema minus UTEX_B_3156 exonContig_122 304581..304913 -
exon_13933_3exon_13933_3Tribonema minus UTEX_B_3156 exonContig_122 305354..305507 -
exon_13933_2exon_13933_2Tribonema minus UTEX_B_3156 exonContig_122 307771..307980 -
exon_13933_1exon_13933_1Tribonema minus UTEX_B_3156 exonContig_122 308850..309085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13933CDS_13933Tribonema minus UTEX_B_3156 CDSContig_122 308850..309085 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13933 ID=mRNA_13933|Name=jgi.p|Trimin1|175192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_122:304581..309085- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCGTTGAGTGTACCTCTGCTCTGCCCTATCCGGACCGGCCATG
GGAAGCCACTCTAAGCATTCACGGCAAACACGAGTTCACAATAAAGAAGG
CGCCAGGGAGCGGCTTCACCTGCAGCACTCGTGACGACTTCCTGGGAGAC
AACTTGTGGCTGGAAAATTTGGAGGAAGCTGTGTCGGTGGCGAACGGGGT
GGAGACAGTGCTGAAGGAAGCGCTCGGAGTGTACAAGTGCATAGCGGGGC
CGGCCTCCGACAAGGGTTCGGACGGCGAGTCGGACTACGAATACCAGGAG
GACATGGGTATGGATAACGTGGACGATACGGAGCTGGCGGCCAAGTATGC
GGAGAAGGCTGTGTCGGCCAACAAGGCCACGGGGACGTGGGAGGACAGGG
ACGAGGTGCCGCTCATAGGTGGGTACGCATGTACATATGTATGTATCGCC
AACACGCGCCTGATGCGCGATCTGAGCAGACTCATGCGCACAGACACGAG
CTCACTGGGCTTCACGTTGGAGCTGGTGCACGATGATAACCTCACGCTGT
GGCGCGTCAAGGTCTTCGGCTTCACGGACTGCCCGCTCGCAGAGGACATG
GTGAAGCTCAAAAAGGAGCGGAAGCTGGAGCACATTGAGCTGGAGATGAA
GTTCCCGGAGGACTACCCGTACTCGCCCCCCTTCTGCCGCGTCGTCTACC
CGCGCTTCATCCGGCAGACGGGCTACATCCTCGACGGCGCCTTCTGCTTT
GAGCTGCTCACCAAGCAGGGGTGGACGCCCACCAACGACATTGAGACGGT
CATCGTGCAGCTGCGCTTCCTCATGGTGTTTGGCCACGCGCGCATCGACT
TCAACGAGACCACGCCGTACTGCGAGAGGAACTCGCTCAACGCGTTCCGC
GGCGCGGCCAAGCAGCACAACTGGGCCATCTGA
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protein sequence of jgi.p|Trimin1|175192

>Trimin1|175192|e_gw1.122.105.1 ID=Trimin1|175192|e_gw1.122.105.1|Name=jgi.p|Trimin1|175192|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MTVVECTSALPYPDRPWEATLSIHGKHEFTIKKAPGSGFTCSTRDDFLGD
NLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQE
DMGMDNVDDTELAAKYAEKAVSANKATGTWEDRDEVPLIGGYACTYVCIA
NTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDM
VKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCF
ELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNETTPYCERNSLNAFR
GAAKQHNWAI*
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mRNA from alignment at Contig_122:304581..309085-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13933 ID=mRNA_13933|Name=jgi.p|Trimin1|175192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4505bp|location=Sequence derived from alignment at Contig_122:304581..309085- (Tribonema minus UTEX_B_3156 )
ATGACTGTCGTTGAGTGTACCTCTGCTCTGCCCTATCCGGACCGGCCATG
GGAAGCCACTCTAAGCATTCACGGCAAACACGAGTTCACAATAAAGAAGG
CGCCAGGGAGCGGCTTCACCTGCAGCACTCGTGACGACTTCCTGGGAGAC
AACTTGTGGCTGGAAAATTTGGAGGAAGCTGTGTCGGTGGCGAACGGGGT
GGAGACAGTGCTGAAGGAAGCGCTCGGAGTGTACAAGTGAGTTCACACAT
CCTCGGCGCCTCAACTGATCAGTACGCTTTTATCACTGACCAGGCCGCTG
TTTCAGCGCTGCAGCATTGTCATGAGCATACTTTCAGCAGGCCACTTGGC
GCGACCCTAGTTCGCCACTGCTTGCTGGTTGTGTTGCTCTTTTGGTCCAT
CGCTGATCGCCGGGCAGCTCAGTGTCAGGTTTCAGTTCTCCACAGTTCTC
CACTGTAGTGCAGCCAGCATCCCAGGAAGCACGTCTCTTGGTTGGTGGTA
GGGACGGCCTGAGCAGTGCCAGAAGCGAGTTTGGCCAGCATCAACTCCTG
CTGCAGCTCCAGGAGAATTAAAGCTGAAGATCTTCAACAAGTGGAACTGA
TGTTGTTTTGCGCTCCGAGCTAGCTACCCATGCTTTGTGGTGTGGTGCCA
TTGTGATCGGCAGCACGCAAATTCAACTTTGTTACCATGTGCTAACGTGA
GCCTGTGTTATGTGGCGTGCACTCCCCCTGAAAGCCGACACGCGCAGCGA
CACTCTCTTGCTCCCCAGCGACTCATGCTTTCAGTCACCTGGAAGCACAC
TTGGCACTGGCAGGCACGCTTTACATGCATGCAGGTTAATCACAAATGGT
GACGCTCACCCGAAAATCGACAGCAAGATGCAGCCACAAAAGCCAAAGCG
TTTGCAGAGAAAAGGGAAAAGAGAGGAGTGATCACCTTTGTGGCTCTTCA
ACTCAGTAGTGTAACTTACCCGCGACAACGCTCAGCAGCATGACTGACAC
GTGTGGGCACAGGTCCCCACGCATCATGCCCTGACCGGTGTTTTCATTTT
CCCTTTTATTTTAACCAAACCCTAACCCTATCTTGATTGCGATGGCACCG
CTCAGGTGCATAGCGGGGCCGGCCTCCGACAAGGGTTCGGACGGCGAGTC
GGACTACGAATACCAGGAGGACATGGGTATGGATAACGTGGACGATACGG
AGCTGGCGGCCAAGTATGCGGAGAAGGCTGTGTCGGCCAACAAGGCCACG
GGGACGTGGGAGGACAGGGACGAGGTGCCGCTCATAGGTGGGTACGCATG
TACATATGTATGTATGTATGTAATACTTTGTATGGTGAACTGGACTAACA
AGAAGGCCACGGGGACGTGGGAGGACAGTGCCGCTCATAGGTGCGTATGT
ATATATGTAGGTGTGTATGGTGAACTGGACTAACAATAAGGCCATGGGGA
CGTGGGAGGACAGGGACGAGGTGCCGCTCATAGGTGAGGACGTATGTACG
TGTGTGTGTATGGTGAATTGGACCAACAACCTCATAGGTGTGTGTCTAAG
TCTGCGTGTATGTGAACTGGACTGACAACAAGGCCACAAGGACGTGGGAG
GACAGGGTCGCCGCTCATAGGTATGTATGTACTGCGATGTATATATGGTC
AACTAGACTGCGCAGGGTCTTTTGTACGGAATGTGTGCGAGCGGTACACG
CTCAGCTGCGCTACTTAGTGCCCTCTTTTCCGCGATGCTCTTCCGCAGTG
GCCTTGAGACTGTCGCGTCAGCCAAGGTTGAAGTTGAAGTACGCCACGTG
GGGCTGCAGCGCTCAGCAAAGCCAGGGGTACGCGGGATAACATATAGGGT
TGATGAGGCACCAGCGGAAGGTATTGTGATCAGCGGAGCGGCGTGGATGC
TAACCCAAACCGTAAATCCAAACCCTAACCCTTGACCCTAAAAATCGAGA
GGCGCATCGCTGTAGAGATCAGGTGAGCACTTGCATTGTGAGGCTCCACT
GCATATGCGCATACCGGTAACCTGCCGACACATCTGTATAGCTTGGCCTA
TCATCACGGCAGACAGTCTTGCTGAAGCTAATGCTTCAATCTTGGCGTCA
CCATGGTGCAAGGTTCACCTGGCGCTGGCTTGGACTATAGTTGAAGCTTC
TGTAGGGTTAGGCCAGCATAGGGTCAAATGTTGAATTCAACATGGCACAA
GCTCATCTGATGCTGGCTTGGACTAAGGTTGAAGTTAGGGTTCGGTGAGG
GTGAAGTCGCGAGCGCCGAGCAAAGCTGCCATATGGCACTTTCCTCTTTG
TCCATGCTTGAGTTGATGGATTGATTATCACTGCAAGAGTCGGGGTTCTC
ATTGAGTCCTCTTACAGTTTGGAACAATGAGAATTGGTATAGACCTGCAG
TGCGAACATTATGCAGCTGTGGCCGTACATCTTGTACTTTGACACGCACT
GTAGCAACAGCCACTGCAGTTCGTTCTGGCGCTGCTGCACAGTCAGGACG
AGCACGATCGCTACCAAATTCTTCAAGTGCCTTCGCTACCCAAGCATCAC
TTGCGACCCATTCATTGAAGGTCCAGAGCGATTTTCCACCACTCCTGCAC
AGACTGGTGGTGAAACTCTGCGCACATGGCTTGATCGGCTGCATCAAAAG
CGTGCTCAGCCCTAGGGTTAGGGTTATCACCACGCGTGCCCAGCCCTAAG
TAATTAGCTCCAACGGCTTGTCTGCTGCATGGTCAGAGCTTCTTAGAGTT
AGGTAGCACAGTCAGAAAGGAGTGGCATTGTGCCATTCAATGTGGGCTTG
GCACCAGCTCACGTTCCGTCACATCTGCATCACCCTCAACATCAACTTCA
ACTTCAAGCCACCCCCTGGTGGGAGAGGGGGGGGGCTGATGTCTCTCCGT
ACCATCTGCGCTCGGCTGATACAGCTGCTGCTGCGCACAAATGCCAAAAA
GTGCGAACCTGCTGGTTGGTCTGTGGCGTCGACACTGTGCTGAACACACT
GTGGTGTCGCATGTAAGGGTTAGGGTTAGGGTTAGGGTCAGAGAGTGCAC
ACGGCAGCTCGCTGAACGCCGAGGTGAGTCACCTGAGGACCTTGTGCCAG
CATTGAGCCGTCAGTGTTTTAATATACGGGGCATTCATTTCAGGGTTGAA
AGCTGTAATGGACTGTGGCTGGCATGTATGTATGTACAGCATCGTGTGTA
CCGTGTGAGTATGCAACAAAGATACAGCCATCTACACACCGCAGGATATC
CTTGTACACCAACCCTATTTCAACCCCGACTCTAACAGGTCGACAATTAT
TTACTAACCCTAACCATCATTCACGCCTCAATTGAAGCGCTCAAGCGGTC
AGTCATACCATGTATTCCGTCTCTGCAACAGGGCCGAAGCGGTCACTGGC
GCGACGGGCATGTATGTATGCACAGTACCGTGCGAGTGCAGAACGAAGAT
ACAGTTCTATCTACACATTGTGTGCTTGTATACTCAGCCTGAACCTAACC
CTAACCCTAACAAGTCACCACTACTGTGAATTCCGCCTATTCCACAGGGC
TGAAGCGGTCACGCGGCGCGACGGGCAGCGCCAACACGCGCCTGATGCGC
GATCTGAGCAGACTCATGCGCACAGACACGAGCTCACTGGGCTTCACGTT
GGAGCTGGTGCACGATGATAACCTCACGCTGTGGCGCGTCAAGGTCTTCG
GCTTCACGGACTGCCCGCTCGCAGAGGACATGGTGAGCGCTGCTGCTGAT
GGTGTTGATGATGATGCTCAGTTTAATGGGCTAGTGTCATGCACATGTGC
GCATTGTGTTGCAAGGGGGGGTTGGGGGGGGGGGGGAGGGGGGGGGGCAT
TGGTGAGGGGGTCATTCCTCCCGGGGCAATCAGCATCACCGTGCTGTTGG
CCCTCCTCGTAAGCTCCACAGCCACAGCACTGCCAGCTACCCGAAGGTCT
GCCGGCACAGGTGCTTGCCTCATCAAGGCGTCTATTGCCGACGCCTCTGC
AAGGAGTCGTATGCTAAGTAGTCCCCTAGCGTCAAGGCAATAGTGAGCGT
CAGCCATACGGTTAGGAAGTCACGGTTGCGCTTGCAAATGCTGGCGCTCA
TCCACGTGCCAGGGCTACTATACTGGCTTCGTCGCAACTAATTATTGCTG
CCCTACCCACACCGTTGCGCAGGTGAAGCTCAAAAAGGAGCGGAAGCTGG
AGCACATTGAGCTGGAGATGAAGTTCCCGGAGGACTACCCGTACTCGCCC
CCCTTCTGCCGCGTCGTCTACCCGCGCTTCATCCGGCAGACGGGCTACAT
CCTCGACGGCGCCTTCTGCTTTGAGCTGCTCACCAAGCAGGGGTGGACGC
CCACCAACGACATTGAGACGGTCATCGTGCAGCTGCGCTTCCTCATGGTG
TTTGGCCACGCGCGCATCGACTTCAACGAGACCACGCCGTACTGCGAGAG
GAACTCGCTCAACGCGTTCCGCGGCGCGGCCAAGCAGCACAACTGGGCCA
TCTGA
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Coding sequence (CDS) from alignment at Contig_122:304581..309085-

>mRNA_13933 ID=mRNA_13933|Name=jgi.p|Trimin1|175192|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_122:304581..309085- (Tribonema minus UTEX_B_3156 )
ATGACTGTCGTTGAGTGTACCTCTGCTCTGCCCTATCCGGACCGGCCATG
GGAAGCCACTCTAAGCATTCACGGCAAACACGAGTTCACAATAAAGAAGG
CGCCAGGGAGCGGCTTCACCTGCAGCACTCGTGACGACTTCCTGGGAGAC
AACTTGTGGCTGGAAAATTTGGAGGAAGCTGTGTCGGTGGCGAACGGGGT
GGAGACAGTGCTGAAGGAAGCGCTCGGAGTGTACAAGTGCATAGCGGGGC
CGGCCTCCGACAAGGGTTCGGACGGCGAGTCGGACTACGAATACCAGGAG
GACATGGGTATGGATAACGTGGACGATACGGAGCTGGCGGCCAAGTATGC
GGAGAAGGCTGTGTCGGCCAACAAGGCCACGGGGACGTGGGAGGACAGGG
ACGAGGTGCCGCTCATAGGTGGGTACGCATGTACATATGTATGTATCGCC
AACACGCGCCTGATGCGCGATCTGAGCAGACTCATGCGCACAGACACGAG
CTCACTGGGCTTCACGTTGGAGCTGGTGCACGATGATAACCTCACGCTGT
GGCGCGTCAAGGTCTTCGGCTTCACGGACTGCCCGCTCGCAGAGGACATG
GTGAAGCTCAAAAAGGAGCGGAAGCTGGAGCACATTGAGCTGGAGATGAA
GTTCCCGGAGGACTACCCGTACTCGCCCCCCTTCTGCCGCGTCGTCTACC
CGCGCTTCATCCGGCAGACGGGCTACATCCTCGACGGCGCCTTCTGCTTT
GAGCTGCTCACCAAGCAGGGGTGGACGCCCACCAACGACATTGAGACGGT
CATCGTGCAGCTGCGCTTCCTCATGGTGTTTGGCCACGCGCGCATCGACT
TCAACGAGACCACGCCGTACTGCGAGAGGAACTCGCTCAACGCGTTCCGC
GGCGCGGCCAAGCAGCACAACTGGGCCATCTGA
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