mRNA_14701 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352480
Unique NamemRNA_14701
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A835ZBX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX3_9STRA)

HSP 1 Score: 345 bits (886), Expect = 4.280e-118
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 2 
Query:  347 MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG 877
            MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG
Sbjct:    1 MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG 177
[Close]
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A835ZGK3_9STRA (Aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.370e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = -3 
Query:    2 MRGGTALLRRLTAISLVRSHAALQGQHRLLPSLYQVLPNVRRPSVSRLLHAAARDETAGKPAAAVANGASAAAAPAEDEFDFETLPD 262
            MRGGTALLRRLTAISLVRSHAALQGQHRLLPSLYQVLPNVRRPSVSRLLHAAARDETAGKPAAAVANGASAAAAPAEDEFDFETLPD
Sbjct:    1 MRGGTALLRRLTAISLVRSHAALQGQHRLLPSLYQVLPNVRRPSVSRLLHAAARDETAGKPAAAVANGASAAAAPAEDEFDFETLPD 87
[Close]
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A6H5JXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.550e-37
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 2 
Query:  461 AASDPFRPAKASIDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 877
            A  DPFRP +AS+ PLVINAL  VLF+ D  A  A +A L+ R D   T EE+  V SRV GV     ELRF LA+AV R   IAKYGM  DYG+S+++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL+G
Sbjct:  106 AEMDPFRPTRASMSPLVINALVSVLFRPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVLQG 247
[Close]
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: D7FRB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.150e-32
Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 2 
Query:  497 IDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 877
            + PLVINAL  VLFK D  A  A +A L+ R D   T EE+  V SRV GV     ELRF LA+AV R   IAKYGM  DYG+SE++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL G
Sbjct:    1 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLAG 130
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZBX3_9STRA4.280e-118100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGK3_9STRA2.370e-42100.00Aminotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A6H5JXH9_9PHAE4.550e-3756.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRB2_ECTSI1.150e-3256.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:159879..161633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352480|estExt_Genemark1.C_Ctg_1200019
Max annot lvl2759|Eukaryota
EggNOG OGs2EWVJ@1|root,2SYMA@2759|Eukaryota
Evalue1.02e-34
Seed ortholog2880.D7FRB2
Hectar predicted targeting categorysignal peptide
TranscriptId352802
TrackFilteredModels1
ProteinId352480
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352480gene_14701Tribonema minus UTEX_B_3156 geneContig_120 159879..161633 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14701_1exon_14701_1Tribonema minus UTEX_B_3156 exonContig_120 159879..160463 +
exon_14701_2exon_14701_2Tribonema minus UTEX_B_3156 exonContig_120 161313..161633 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14701UTR5_14701Tribonema minus UTEX_B_3156 five_prime_UTRContig_120 159879..160224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14701CDS_14701Tribonema minus UTEX_B_3156 CDSContig_120 160225..160463 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14701UTR3_14701Tribonema minus UTEX_B_3156 three_prime_UTRContig_120 161608..161633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352480Trimin1|352480|estExt_Genemark1.C_Ctg_1200019Tribonema minus UTEX_B_3156 polypeptideContig_120 160225..161607 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14701 ID=mRNA_14701|Name=jgi.p|Trimin1|352480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=906bp|location=Sequence derived from alignment at Contig_120:159879..161633+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTCCGGCAGCGTTTCGAAGTCGAATTCGTCTTCTGCGGGCGCTGCTGCC
GCCGATGCACCATTTGCTACTGCAGCTGCTGGTTTGCCTGCCGTCTCATC
CCTCGCCGCTGCATGCAACAGTCGGCTGACCGAGGGCCTTCTGACATTGG
GCAAGACCTGGTATAAGCTCGGGAGAAGGCGATGCTGCCCTTGCAGTGCA
GCATGGCTGCGTACAAGGCTGATGGCAGTGAGCCGCCGCAGCAGCGCCGT
ACCGCCCCTCATTCCTCTCTCTAGCAACTGTGTCATCACACGTCAACAAG
AACTTCAACAAATATCTTAAGTGTGGTGTGTGCTAACTTGGTGGTGATGC
ATACCTCAGTGCTGCTGCTCCCACTAGCGCTGCTGGTGGACCACGTCCGA
GCCTTTACCGCTCCTCTGGCCCGCCAACAGCATCTGTACAGTCATCACCT
TCAACTACGAGCCGCCTCGGATCCATTCAGGCCAGCCAAGGCGAGCATCG
ATCCTCTAGTGATCAATGCGTTGCAACGAGTGCTATTCAAGGACGAGCCT
GCGGATGCAGCAGTGTCGGCGCTGTTGCAGTCAAGAGACGACGCCCTAAC
ACCGGAGGAGGACGCTCTAGTACGAAGTCGGGTGCACGGCGTGGTGCACA
GTGCTCAGGAGCTGCGCTTCACGCTCGCATCCGCGGTGTCGCGCCACGCG
TTCATCGCGAAGTACGGCATGCAGGGCGACTACGGCGTATCAGAGGATCT
GGAGTCGAATCCGCTCGCGCAGCTGAATCACGCGGAGTGCCTGCTGGCAC
TGTACATGCTGCACAGGGAGGGGCGAGGGGAGGAGCCCGCGTTTGTGGAT
GCGGAGAAGCTGGACGTCTTGCGTGGGTGACATCGGCAATACCACTTGTA
TTGATT
back to top

protein sequence of jgi.p|Trimin1|352480

>Trimin1|352480|estExt_Genemark1.C_Ctg_1200019 ID=Trimin1|352480|estExt_Genemark1.C_Ctg_1200019|Name=jgi.p|Trimin1|352480|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKAS
IDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVV
HSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLL
ALYMLHREGRGEEPAFVDAEKLDVLRG*
back to top

mRNA from alignment at Contig_120:159879..161633+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14701 ID=mRNA_14701|Name=jgi.p|Trimin1|352480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1755bp|location=Sequence derived from alignment at Contig_120:159879..161633+ (Tribonema minus UTEX_B_3156 )
GGTCCGGCAGCGTTTCGAAGTCGAATTCGTCTTCTGCGGGCGCTGCTGCC
GCCGATGCACCATTTGCTACTGCAGCTGCTGGTTTGCCTGCCGTCTCATC
CCTCGCCGCTGCATGCAACAGTCGGCTGACCGAGGGCCTTCTGACATTGG
GCAAGACCTGGTATAAGCTCGGGAGAAGGCGATGCTGCCCTTGCAGTGCA
GCATGGCTGCGTACAAGGCTGATGGCAGTGAGCCGCCGCAGCAGCGCCGT
ACCGCCCCTCATTCCTCTCTCTAGCAACTGTGTCATCACACGTCAACAAG
AACTTCAACAAATATCTTAAGTGTGGTGTGTGCTAACTTGGTGGTGATGC
ATACCTCAGTGCTGCTGCTCCCACTAGCGCTGCTGGTGGACCACGTCCGA
GCCTTTACCGCTCCTCTGGCCCGCCAACAGCATCTGTACAGTCATCACCT
TCAACTACGAGCCGCCTCGGATCCATTCAGGCCAGCCAAGGCGAGCATCG
ATCCTCTAGTGATCAATGCGTTGCAACGAGTGCTATTCAAGGACGAGCCT
GCGGATGCAGCAGTGTCGGCGCTGTTGCAGTCAAGGTGCGTGCAGCTTCA
TATGCTGGTCATGTGTAACATGCACGCGCATCAACTTCCCTGCTGGAGCC
GCCTAGGATCCTTGTGCGTAGCGATATGCTGTGAATTATTCCTCATATTG
TCGGGAACCTGGCTGTGGCACACTGGTTCAGCCAGTGCCAATGGTGATAT
GACCGCTCTCCCACACCTGCGACAAGGTTCAACTCCACGACCATGCAGTG
GCTGAGCACTTGTGCGTTTGTATGACTTGAAAGCACCGCGATAAGATCAC
ACAAGTGTCTCTGCGCTGCCAAGCTCACCCCCCCTCACAGCACAGATGAT
GCGTGAGCCCCACAGAAAGACGTGCTGGCTCTGCAGTAGGCGTCCCAAAC
CACTCGCTCCCACGTGCAAGCGCTTCACGTCAATTGCAACGGACACACTT
GCATGATGTTCGCCCATAGGACACCATCCAAAAATGGCAAGCCTGTGCTA
ACGCTGCTGAGCACCAGTCACTGCAGAGATGGCGCGCTGACACAGGAAGG
GCATACGCTACATCGTGCGGAGCCAGTGCATGGCTTGGGGCATCGTGCTC
AGGAACCGCGCTTGACGCTCGCACCTTGTTCTGACTCACACTCAGAGGAT
CACTTTAAGGATCACCAAAAAAAGTTGCGCTTTGCCGCTGCCGAATACTG
CAGAGGCGACGCTCTGACAACGGAGGAGGACGCTCTAGTATGAAGCAGCG
TGCACGGCGTGGTGCACAGTGCTCAGGAGCTGCGCTTCACACACTCACAT
CCCATATAACCCCCTGCTCACACCCAAATTCTAACACATACACAACAAAA
CTCCTCCTCTTCGTGCTACTGCCGAGCACTGCAGAGACGACGCCCTAACA
CCGGAGGAGGACGCTCTAGTACGAAGTCGGGTGCACGGCGTGGTGCACAG
TGCTCAGGAGCTGCGCTTCACGCTCGCATCCGCGGTGTCGCGCCACGCGT
TCATCGCGAAGTACGGCATGCAGGGCGACTACGGCGTATCAGAGGATCTG
GAGTCGAATCCGCTCGCGCAGCTGAATCACGCGGAGTGCCTGCTGGCACT
GTACATGCTGCACAGGGAGGGGCGAGGGGAGGAGCCCGCGTTTGTGGATG
CGGAGAAGCTGGACGTCTTGCGTGGGTGACATCGGCAATACCACTTGTAT
TGATT
back to top

Coding sequence (CDS) from alignment at Contig_120:159879..161633+

>mRNA_14701 ID=mRNA_14701|Name=jgi.p|Trimin1|352480|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_120:159879..161633+ (Tribonema minus UTEX_B_3156 )
ATGCATACCTCAGTGCTGCTGCTCCCACTAGCGCTGCTGGTGGACCACGT
CCGAGCCTTTACCGCTCCTCTGGCCCGCCAACAGCATCTGTACAGTCATC
ACCTTCAACTACGAGCCGCCTCGGATCCATTCAGGCCAGCCAAGGCGAGC
ATCGATCCTCTAGTGATCAATGCGTTGCAACGAGTGCTATTCAAGGACGA
GCCTGCGGATGCAGCAGTGTCGGCGCTGTTGCAGTCAAGAGACGACGCCC
TAACACCGGAGGAGGACGCTCTAGTACGAAGTCGGGTGCACGGCGTGGTG
CACAGTGCTCAGGAGCTGCGCTTCACGCTCGCATCCGCGGTGTCGCGCCA
CGCGTTCATCGCGAAGTACGGCATGCAGGGCGACTACGGCGTATCAGAGG
ATCTGGAGTCGAATCCGCTCGCGCAGCTGAATCACGCGGAGTGCCTGCTG
GCACTGTACATGCTGCACAGGGAGGGGCGAGGGGAGGAGCCCGCGTTTGT
GGATGCGGAGAAGCTGGACGTCTTGCGTGGGTGA
back to top