Trimin1|352480|estExt_Genemark1.C_Ctg_1200019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352480
Unique NameTrimin1|352480|estExt_Genemark1.C_Ctg_1200019
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length178
Homology
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A835ZBX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX3_9STRA)

HSP 1 Score: 344 bits (883), Expect = 9.930e-120
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG 177
            MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG
Sbjct:    1 MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKASIDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPAFVDAEKLDVLRG 177          
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A6H5JXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.000e-38
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 0
Query:   39 AASDPFRPAKASIDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 177
            A  DPFRP +AS+ PLVINAL  VLF+ D  A  A +A L+ R D   T EE+  V SRV GV     ELRF LA+AV R   IAKYGM  DYG+S+++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL+G
Sbjct:  106 AEMDPFRPTRASMSPLVINALVSVLFRPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVLQG 247          
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: D7FRB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.220e-34
Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   51 IDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 177
            + PLVINAL  VLFK D  A  A +A L+ R D   T EE+  V SRV GV     ELRF LA+AV R   IAKYGM  DYG+SE++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL G
Sbjct:    1 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLAG 130          
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Match: A0A4D9CRF9_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRF9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.200e-11
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 0
Query:   47 AKASIDPLVINALQRVLFKDEP---------ADAAVSALLQSR------DDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAK-YGMQ-GDYGVSEDLESNPLAQLNHAECLLALYMLHRE--GRGEEPA--FVDAEKLDVL 175
            A+A++DP+VIN L  +L              A+   +  ++ R      + ALT EE  L+ +RV+GV      L F L  AV++ + + + +G    D+G+  D   +P+  +N AECLLALYML  E  G G  P   F+D+++L+VL
Sbjct:  139 ARAAVDPVVINILVTILSSSAASSPPSTLADAERIANKAIRKRMRTDAPESALTAEERRLIYARVYGVEVLRARLSFLLEHAVAQSSLVGRRFGPTLADFGLPMDASGDPMLVVNRAECLLALYMLTEEVDGEGRAPRVDFLDSDRLEVL 288          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352480 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZBX3_9STRA9.930e-120100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JXH9_9PHAE2.000e-3856.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRB2_ECTSI6.220e-3456.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CRF9_9STRA3.200e-1134.00SAM_MT_RSMB_NOP domain-containing protein n=3 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:160225..161607 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352480mRNA_14701Tribonema minus UTEX_B_3156 mRNAContig_120 159879..161633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352480|estExt_Genemark1.C_Ctg_1200019 ID=Trimin1|352480|estExt_Genemark1.C_Ctg_1200019|Name=jgi.p|Trimin1|352480|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MHTSVLLLPLALLVDHVRAFTAPLARQQHLYSHHLQLRAASDPFRPAKAS
IDPLVINALQRVLFKDEPADAAVSALLQSRDDALTPEEDALVRSRVHGVV
HSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLL
ALYMLHREGRGEEPAFVDAEKLDVLRG*
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