mRNA_14708 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137771
Unique NamemRNA_14708
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A835ZD75_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD75_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.610e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE
Sbjct:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 76          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: C1N4R6_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N4R6_MICPC)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-25
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            W +L++CLLID  GDSS+ LPG +G  SD  YAPLEAF+L ++F  S  ++ LGF+EE LPFTD LPTAT+AWV+E
Sbjct:    1 WAKLVICLLIDGVGDSSFLLPG-VGEFSDAAYAPLEAFLLGQLFR-SNAISSLGFVEEALPFTDVLPTATLAWVIE 74          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A830HUV1_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HUV1_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 7.290e-25
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            W +L +C+LID  GDSS+ LPG LG LSD +YAP+EAF L+ +F  SG + G+GF+EE LPF+DALPTAT+AW+L+
Sbjct:   67 WAKLALCVLIDLAGDSSFLLPG-LGELSDGVYAPIEAFALNSLF-SSGALGGIGFVEEALPFSDALPTATVAWMLQ 140          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: C1E185_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E185_MICCC)

HSP 1 Score: 97.4 bits (241), Expect = 3.390e-23
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            W +L+VCL+IDA GDSS+ LPG LG  +D+ YAPLEAF+LS++F  S  V+G+GF+EE LPFTD +PTAT+AW+ E
Sbjct:  143 WGKLIVCLVIDALGDSSFLLPG-LGEGTDIAYAPLEAFLLSQLFR-SNVVSGVGFVEEALPFTDVIPTATLAWMTE 216          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A812Q9E8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Q9E8_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 2.540e-22
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WL+LL+CL ID  GD+++ LPG LG   D+ YAPLEAF L  +F G+G ++ LGF EE LPFTDALPTAT  WVL+
Sbjct:  165 WLKLLICLAIDLAGDATFLLPG-LGEFGDVAYAPLEAFALRFLFGGTG-LSVLGFFEEALPFTDALPTATTGWVLQ 238          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A8J2F1R9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F1R9_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 3.080e-22
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 LRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            L+L+ CLL+D  G +S+ LPG  G L+D+ YAP++A++L ++F  S R+A LGF EEILP TD LPTAT+AWVLE
Sbjct:   22 LKLVFCLLLDLFGVASFLLPG-FGELADISYAPVQAYLLYRLFNNSFRIAALGFAEEILPGTDVLPTATLAWVLE 95          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A1Q9C5R8_SYMMI (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9C5R8_SYMMI)

HSP 1 Score: 94.4 bits (233), Expect = 7.170e-22
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WL+LL+CL ID  GD+++ LPG LG L D+ YAPLEA  L  +F G+G ++ LGF EE LPFTDALPTAT  WVL+
Sbjct:  164 WLKLLICLAIDLAGDATFLLPG-LGELGDVAYAPLEAVALRFLFGGAG-LSVLGFFEEALPFTDALPTATTGWVLQ 237          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A8J6CEL1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CEL1_DIALT)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-21
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WL+L+ C+LID GGD+SYALP  +G++ D+ +AP  A +L ++F GS  +AG+ F++EILPFTD +P ATIAW LE
Sbjct:  104 WLKLIPCVLIDLGGDASYALPF-VGDIGDVTWAPTSALLLKQLF-GSNAIAGVDFVKEILPFTDIIPVATIAWTLE 177          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A812R8U2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812R8U2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 5.910e-21
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WL+L+VC+++D  GD+++ LPG LG   D+ YAP+EAF L  +F G+G ++ LGF+EE LPFTDA+PTAT  WVL+
Sbjct:  162 WLKLVVCVVLDLAGDATFLLPG-LGEFGDVAYAPVEAFALRFLFGGTG-LSVLGFIEEALPFTDAVPTATTGWVLQ 235          
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Match: A0A7S1QMI6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QMI6_ALECA)

HSP 1 Score: 85.5 bits (210), Expect = 1.190e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRVAGLGFLEEILPFTDALPTATIAWVLE 228
            WL+LL+CL ID  GD+S+  P  +G L DL YAPLEA  L  +F G   +A +G  EE LPFTDALPTAT AWVL+
Sbjct:  123 WLKLLLCLAIDVLGDASFLFPA-VGELGDLAYAPLEALALRALF-GGNVLAFVGLAEEGLPFTDALPTATSAWVLQ 196          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD75_9STRA3.610e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
C1N4R6_MICPC1.130e-2560.53Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A830HUV1_9CHLO7.290e-2560.53Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
C1E185_MICCC3.390e-2361.84Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A812Q9E8_9DINO2.540e-2260.53Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A8J2F1R9_9DINO3.080e-2257.33Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A1Q9C5R8_SYMMI7.170e-2260.53Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]
A0A8J6CEL1_DIALT1.020e-2155.26Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A812R8U2_9DINO5.910e-2155.26Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S1QMI6_ALECA1.190e-1857.89Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:227113..227340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137771|gw1.120.35.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CZ40@1|root,2S8A8@2759|Eukaryota
Evalue5.56e-24
Seed ortholog296587.XP_002500436.1
Hectar predicted targeting categorysignal peptide
TranscriptId138093
TrackFilteredModels1
ProteinId137771
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137771gene_14708Tribonema minus UTEX_B_3156 geneContig_120 227113..227340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14708_1exon_14708_1Tribonema minus UTEX_B_3156 exonContig_120 227113..227340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14708CDS_14708Tribonema minus UTEX_B_3156 CDSContig_120 227113..227340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137771Trimin1|137771|gw1.120.35.1Tribonema minus UTEX_B_3156 polypeptideContig_120 227113..227340 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14708 ID=mRNA_14708|Name=jgi.p|Trimin1|137771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_120:227113..227340+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCTTCGCCTGCTGGTGTGCCTGCTGATAGATGCAGGCGGCGATTCGTC
TTACGCGCTACCAGGGCCGTTAGGCAATCTGTCAGACCTATTATACGCAC
CGCTGGAGGCCTTTATACTCTCCAAGGTATTTCCAGGATCCGGCAGGGTC
GCGGGACTTGGTTTTCTCGAGGAAATTCTTCCTTTTACAGATGCGCTGCC
TACCGCCACCATAGCGTGGGTTCTGGAG
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protein sequence of jgi.p|Trimin1|137771

>Trimin1|137771|gw1.120.35.1 ID=Trimin1|137771|gw1.120.35.1|Name=jgi.p|Trimin1|137771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=76bp
WLRLLVCLLIDAGGDSSYALPGPLGNLSDLLYAPLEAFILSKVFPGSGRV
AGLGFLEEILPFTDALPTATIAWVLE
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mRNA from alignment at Contig_120:227113..227340+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14708 ID=mRNA_14708|Name=jgi.p|Trimin1|137771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_120:227113..227340+ (Tribonema minus UTEX_B_3156 )
TGGCTTCGCCTGCTGGTGTGCCTGCTGATAGATGCAGGCGGCGATTCGTC TTACGCGCTACCAGGGCCGTTAGGCAATCTGTCAGACCTATTATACGCAC CGCTGGAGGCCTTTATACTCTCCAAGGTATTTCCAGGATCCGGCAGGGTC GCGGGACTTGGTTTTCTCGAGGAAATTCTTCCTTTTACAGATGCGCTGCC TACCGCCACCATAGCGTGGGTTCTGGAG
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Coding sequence (CDS) from alignment at Contig_120:227113..227340+

>mRNA_14708 ID=mRNA_14708|Name=jgi.p|Trimin1|137771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=228bp|location=Sequence derived from alignment at Contig_120:227113..227340+ (Tribonema minus UTEX_B_3156 )
TGGCTTCGCCTGCTGGTGTGCCTGCTGATAGATGCAGGCGGCGATTCGTC
TTACGCGCTACCAGGGCCGTTAGGCAATCTGTCAGACCTATTATACGCAC
CGCTGGAGGCCTTTATACTCTCCAAGGTATTTCCAGGATCCGGCAGGGTC
GCGGGACTTGGTTTTCTCGAGGAAATTCTTCCTTTTACAGATGCGCTGCC
TACCGCCACCATAGCGTGGGTTCTGGAG
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