mRNA_10617 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 371 bits (952), Expect = 8.360e-126 Identity = 234/235 (99.57%), Postives = 234/235 (99.57%), Query Frame = 1
Query: 100 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AMMGFGGFSGGKR
Sbjct: 1 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 191 bits (484), Expect = 3.170e-55 Identity = 141/232 (60.78%), Postives = 166/232 (71.55%), Query Frame = 1
Query: 118 SDDLGDKQVSNVV-RRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-MMGFGGFSGGKR 804
S DLG KQV NV RR+WD + YE KAKER+E+GD+ +E + KEEFQPA GA GPAGS RAYLK R KVDL S+L KTQV+T+A+ S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V VK++L + R ED + SGA +K SA E++ R+ E XXXXXXXXXXXXXXXXXXXXXXXX A MMGFGGF GG +
Sbjct: 2 SKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 169 bits (427), Expect = 9.710e-47 Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 1
Query: 148 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 648
NV RR+WD+E +EK AKERLE+ +VE+ +P + +EEFQ A GA GP GS+RAYLK R + LE ++ K QV+T ++A QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER V VKE+L+ L+ R ED K +G PR+SA+ Y+++L
Sbjct: 17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR-EDEKKKAG-PRESAIDAYQKKL 180
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.890e-43 Identity = 92/169 (54.44%), Postives = 123/169 (72.78%), Query Frame = 1
Query: 148 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 648
NV RR+WD+E +EK AKERLE+ +VE+ +P + +EEFQ A GA GP GS+RAYLK R + LE ++ K QV+T ++A QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER V VKE+L+ L+ R ++ KA PR+SA+ YE++L
Sbjct: 17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAG--PRESAIDAYEKKL 180
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.950e-39 Identity = 116/223 (52.02%), Postives = 142/223 (63.68%), Query Frame = 1
Query: 136 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
K V RR+WDV+ YEKKA+ERL R + + +++EF+ A D A GPAGS RA+L R + LE KTQ+I GG++C+VC+CLLKDS YLDHINGKKHQR LGFSMRVERS+VG V E+ + R ED + S A R +A++ YE+R+A A XXXXXXXXXXXXXXXXXXXXXX A MGFGGF GG +
Sbjct: 6 KNVGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKED--EMSVATRPTAIEAYEQRIAA-AQEEEXXXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A1V9YAE1_9STRA (U1-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAE1_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.410e-37 Identity = 84/176 (47.73%), Postives = 115/176 (65.34%), Query Frame = 1
Query: 136 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAA 663
K V+NV RR+WD + +KA R + + E S+KA +EEFQ AP+GA GP GS RA+LKART++V+LE + KT V+ ++ GY+CEVC+ LKDS++Y+DHINGK+H R LGFSMRVE+ V +VKE+L+ R D S A + AV+ YE++LAE A
Sbjct: 5 KGVANVTRRTWDKAFFAQKA---ALRANGLLETESKSTKAVSQREEFQAAPEGAAGPIGSARAFLKARTKQVELEENVGKTVVLKPTDDTAKATGYFCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNMASKRKWDP---SVAKKPDAVEAYEKKLAEMDA 174
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6A3XVT7_9STRA (U1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XVT7_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.790e-37 Identity = 84/160 (52.50%), Postives = 110/160 (68.75%), Query Frame = 1
Query: 82 VLEHSTMSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKL 561
+ + S+ KG G V+NV R++WD E YEK A+ R + E EEA+ + +K+EFQ A +GA GPAGS RA+LKART K++LE+ + +V+ S AS S GGY+CEVC+C LKDS+AYLDHINGKKH R LG+SMRVERS+V VK +L
Sbjct: 1 MADKSSGRKGAG--------VANVTRQTWDREHYEKLAQLRADGQLEKEEAKKVINS---SKQEFQAANEGAAGPAGSARAFLKARTSKMELETSVGTIKVVKSDDASKS-GGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRL 148
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A067CKA5_SAPPC (U1-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKA5_SAPPC) HSP 1 Score: 143 bits (360), Expect = 5.420e-37 Identity = 99/227 (43.61%), Postives = 130/227 (57.27%), Query Frame = 1
Query: 124 DLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
D K V+NV RR+WD + +KA R + + E S+K +EEFQ APDGA GP GS RA+LKART++V+LE + KT V+ A + GY+CEVC+ LKDS++Y+DHINGK+H R LGFSMRVE+ V +VKE+L+ R D + + AV+ YE++LAE A XXXXXX AMMGFGGF K+
Sbjct: 3 DAPKKGVANVTRRTWDKAFFAQKA---ALRANGLLEEEVKSTKQISEREEFQAAPDGAAGPIGSSRAFLKARTKQVELEENVGKT-VVLKADETMKGTGYYCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNLASKRKWDP---TVTKKPDAVEAYEKKLAEMDAEANLKKKQKKEXXXXXXEEAPVNVFATEDEEAMMAMMGFGGFQSTKK 222
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W4GP94_9STRA (U1-type domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP94_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.180e-37 Identity = 86/176 (48.86%), Postives = 115/176 (65.34%), Query Frame = 1
Query: 124 DLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLA 651
D K V+NV R++WD +E++A L +EE + K L +EEFQPA + A GPAGS RA+LKART+KV+L+S + KT VI A + G Y+CEVC+ LKDSI+Y+DH+NGKKH R LGFSMRVE+SSV SVK++L+ R D + AV+ YE++LA
Sbjct: 3 DQPKKGVANVTRKTWDKAFFEQQAA--LRASGALEEEEKKTKKIDLAREEFQPAAEDAAGPAGSVRAFLKARTKKVELDSNVGKTTVIKPDDAMRATG-YYCEVCEVTLKDSISYIDHVNGKKHLRKLGFSMRVEQSSVASVKDRLNAAAKRKWDP---EITKKLDAVEAYEKKLA 172
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 143 bits (361), Expect = 1.320e-36 Identity = 80/164 (48.78%), Postives = 110/164 (67.07%), Query Frame = 1
Query: 118 SDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDE---VEEARP---------ASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQG-GYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKL 570
+ +L KQV+NV RR WDVE YE++AKER R +E +EE R A ++ NKEEFQ AP A GP GS+RA+L+AR + +DLES++ ++++++ A G G+ C+VC C LKDS+ YLDHINGKKHQR LGF+MRVERS+ V ++L +
Sbjct: 10 ASNLNYKQVANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSI 173 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1175bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GATTGAGTCAGCGGTGATTCCTGGAGCTGATCGATAGTGCGAACGCACGAback to top protein sequence of jgi.p|Trimin1|352442 >Trimin1|352442|estExt_Genemark1.C_Ctg_1190027 ID=Trimin1|352442|estExt_Genemark1.C_Ctg_1190027|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSback to top mRNA from alignment at Contig_119:170715..171889+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1175bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:170715..171889+ >mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )back to top |