mRNA_10645 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150124
Unique NamemRNA_10645
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A835ZCG4_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.590e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318
            QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV
Sbjct:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 106          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: D7G790_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G790_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.270e-30
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318
            +EL TRVMYHRP DPN FLLEVL TL++A+    PT FFT EDI+A F + DPTG+G +S +QYE AL+ +G++ P+V  P+   +R+ +  F+ C+ +EL A SV
Sbjct:   33 KELGTRVMYHRPKDPNKFLLEVLGTLKSAQGQGTPTTFFTDEDIDAMFSLFDPTGRGHISHEQYENALKTLGIDDPSVGAPK--HKRISKDEFRSCISKELLANSV 136          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A7S2S3G4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3G4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.200e-25
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318
            QEL TR++Y R  DPNAFLLEVL+ ++    S  PT FFT+EDI   F M DPT KG +SR+QYEQAL ++GVE P V +    + ++ R TF RC+ +E+ A S+
Sbjct:   42 QELGTRLVYERREDPNAFLLEVLEEIQKNSASSKPTEFFTSEDIITMFEMFDPTNKGEISREQYEQALASIGVETPKVNVMT--KMKIDRQTFCRCIADEIRALSL 145          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A067CSD2_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSD2_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 2.130e-19
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEEL 303
            QE+CT +MY RP++P  F+++ L+ +R AR++     FFT  D+   F M D T +G++S  QY+QAL N+G+++P + LPE    RV ++ F R M +EL
Sbjct:   35 QEICTNMMYIRPTNPREFMVQQLNLIRHARENRTAMTFFTETDLATMFSMFDTTSQGTISLVQYDQALLNLGIDRPTLRLPESIN-RVDKTLFVRSMLQEL 134          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A3F2RDY2_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDY2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.030e-17
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315
            L T ++YHRPS+P  FL + L  LR A+    P  FF   D++A F   D   +G+++ +QY+QALRN+G+EKP + LPE     + ++ F R + +E+  AS
Sbjct:   39 LGTLLLYHRPSNPREFLAQHLQELRRAKQEQTPMPFFNEHDLKAMFAAFDMKEQGTITLEQYDQALRNLGIEKPTMRLPESVAS-ITQALFIRSVTQEIKNAS 140          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A1V9ZHC5_9STRA (EF-hand domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHC5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.100e-17
Identity = 41/97 (42.27%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCM 291
            QELC+ +MY RP++P  F+++ L  +R AR++   ++FFT  D+   F M D T +GS+S  QY+QAL+N+G+++P + LPE    RV ++ F R M
Sbjct:  418 QELCSLMMYSRPANPREFMIQQLQIIRHARETRSVSSFFTELDLTTMFSMFDTTNQGSISLAQYDQALKNLGIDRPTIRLPESIT-RVDKNLFVRSM 513          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: K3WBI5_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBI5_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-14
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   13 TRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315
            T +++HRP +P  FL + L  ++ A+ S V   FF   D+EA F   D T +G ++ +QY+QAL+N+G+++P + LPE     +  + F R M +E+  AS
Sbjct:   44 TLLLFHRPENPRQFLAQHLAEIQRAKQSQVHVPFFEEHDLEAMFAAFDVTDRGYITPEQYDQALKNLGIDQPTLRLPESVS-AINHNLFIRSMTQEIKNAS 143          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A8J2WMQ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WMQ0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.950e-14
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 ELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELA 306
            +L  R+M+ RP DPNAFLLE L+ ++   DS V   FFT  DI A F  +DP   G+++ +QY  AL+++GVE P   L EG  E V +  F   M+ ELA
Sbjct:   24 DLGARLMFERPKDPNAFLLEELERVQ---DSKV-RGFFTDTDIAACFAALDPHDTGTITAKQYAHALKSMGVEAPKEPLDEGT-EVVAKDDFMERMKRELA 119          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A329T3N0_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329T3N0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.060e-14
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315
            L T ++YHRPS+P  FL++ LD +R A+       FF   D++  F   D   +G ++ +QY+QAL N+G+EKP + LPE     + ++ F R + +E+  AS
Sbjct:   39 LGTLLLYHRPSNPREFLIQQLDEMRKAKQEQRHEPFFEENDLKVMFAAFDIKEQGFITTEQYDQALLNLGIEKPTLRLPESVS-TINQALFIRSVTQEIKNAS 140          
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A225VXB0_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VXB0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.160e-13
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315
            L T ++YHRP++P  FL + LD +R A+       FF  +D++A F   D   +G ++  QY+QAL N+G+EKP + LPE     + ++ F R + +E+  AS
Sbjct:   37 LGTLLLYHRPANPREFLAQHLDEMRKAKQEQNHVPFFDEQDLKAMFAAFDIKEQGYITSVQYDQALLNLGIEKPTLRLPESVS-AINQALFIRSVTQEIKNAS 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCG4_9STRA5.590e-69100.00EF-hand domain-containing protein (Fragment) n=1 T... [more]
D7G790_ECTSI1.270e-3051.89EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2S3G4_9STRA3.200e-2550.94Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A067CSD2_SAPPC2.130e-1941.58EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
A0A3F2RDY2_9STRA3.030e-1739.81EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A1V9ZHC5_9STRA3.100e-1742.27EF-hand domain-containing protein n=1 Tax=Thrausto... [more]
K3WBI5_GLOUD1.160e-1436.63EF-hand domain-containing protein n=1 Tax=Globispo... [more]
A0A8J2WMQ0_9STRA1.950e-1444.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A329T3N0_9STRA3.060e-1436.89EF-hand domain-containing protein n=9 Tax=Phytopht... [more]
A0A225VXB0_9STRA1.160e-1336.89EF-hand domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:337206..337523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150124|gw1.119.78.1
Preferred nameEFCAB10
Max annot lvl2759|Eukaryota
EggNOG OGs2BVGW@1|root,2S28U@2759|Eukaryota
Evalue2.08e-31
Seed ortholog2880.D7G790
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-04_003720.1
TranscriptId150446
TrackFilteredModels1
ProteinId150124
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150124gene_10645Tribonema minus UTEX_B_3156 geneContig_119 337206..337523 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10645_1exon_10645_1Tribonema minus UTEX_B_3156 exonContig_119 337206..337523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10645CDS_10645Tribonema minus UTEX_B_3156 CDSContig_119 337206..337523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150124Trimin1|150124|gw1.119.78.1Tribonema minus UTEX_B_3156 polypeptideContig_119 337206..337523 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGAGCTTTGCACTAGAGTGATGTATCACAGGCCCAGCGATCCCAACGC
CTTTCTGCTGGAGGTGCTAGACACACTGAGAACAGCAAGGGATAGCATGG
TGCCGACAGCCTTCTTTACCGCAGAGGACATTGAGGCCACCTTCGGTATG
ATGGATCCCACCGGCAAGGGCAGCGTCAGCAGGCAACAATACGAGCAAGC
TCTGCGGAACGTGGGCGTGGAGAAGCCAGCGGTGGCGCTACCTGAAGGCG
AGCAGGAGAGGGTTTGCAGGAGTACCTTTCAACGGTGCATGCAAGAGGAG
CTAGCTGCCGCCTCTGTG
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protein sequence of jgi.p|Trimin1|150124

>Trimin1|150124|gw1.119.78.1 ID=Trimin1|150124|gw1.119.78.1|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGM
MDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEE
LAAASV
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mRNA from alignment at Contig_119:337206..337523+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )
CAGGAGCTTTGCACTAGAGTGATGTATCACAGGCCCAGCGATCCCAACGC CTTTCTGCTGGAGGTGCTAGACACACTGAGAACAGCAAGGGATAGCATGG TGCCGACAGCCTTCTTTACCGCAGAGGACATTGAGGCCACCTTCGGTATG ATGGATCCCACCGGCAAGGGCAGCGTCAGCAGGCAACAATACGAGCAAGC TCTGCGGAACGTGGGCGTGGAGAAGCCAGCGGTGGCGCTACCTGAAGGCG AGCAGGAGAGGGTTTGCAGGAGTACCTTTCAACGGTGCATGCAAGAGGAG CTAGCTGCCGCCTCTGTG
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Coding sequence (CDS) from alignment at Contig_119:337206..337523+

>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )
CAGGAGCTTTGCACTAGAGTGATGTATCACAGGCCCAGCGATCCCAACGC
CTTTCTGCTGGAGGTGCTAGACACACTGAGAACAGCAAGGGATAGCATGG
TGCCGACAGCCTTCTTTACCGCAGAGGACATTGAGGCCACCTTCGGTATG
ATGGATCCCACCGGCAAGGGCAGCGTCAGCAGGCAACAATACGAGCAAGC
TCTGCGGAACGTGGGCGTGGAGAAGCCAGCGGTGGCGCTACCTGAAGGCG
AGCAGGAGAGGGTTTGCAGGAGTACCTTTCAACGGTGCATGCAAGAGGAG
CTAGCTGCCGCCTCTGTG
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