mRNA_10642 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCACCTTGCATGGAGCTTCAGCGCGCATCAGCAGAAGATGCTTGGATCC
GCTCTACATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCG
ACTCTACCGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCT
GGCACGGTATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAA
TGGGAAGACAGGCACGGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTG
CATGCACCGCAACCTCACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGAC
CCAAGTGCGCTGCTCACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTC
CGTGAGCGCAGCTGTGAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCG
CTAGCAAGGGCGGCGGGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTA
AATGCGGCCAAGGCGTGCCTGGAGAACAACGTACCCAGGCTGGTAATTGT
GAGCTCTGGCGGCGTCAGCAAGCCAAACAGCCCCGTGTACAAGTTCCTCA
ATCTCTTTGGCGAGATCATGAAGTTCAAGGCGCTCGGCGAGGAGGAAGTG
CGCGCGCTGTACGCGCAGTCCGATGCGCCCTGCTACTACACCATCGTGCG
CCCGGGGGGGCTGACGCTGGCCCCCCCCCTCGGCGTCGAGCAGCTCGAGA
TCAACCAGGGGGATGCCATCAGTGGCCGCATTGCGCGCGCCGACGTCGCC
GCCATTTGCGTGGAGGCCATCTACAGCGACGCCACCCGGGACACGACGTT
TGAATGCTACGGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAA
GCAACATATTGAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGC
GCACACAGGGGGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGA
TCATGCCTTGTGACAGCAAGGGTGTAGGGGACGATGGCTTGAAGTAGCCG
GTATCGCTTTGAAGTGGTCGCAATGGAGAGAACACAGCACTTTGTAGGGG
CGCATTGATGGCTGACGTGCAGAGGCTAGAATATGAGGACAGTGGTATGG
GTTGTTGTTGCAGTAAGCAGTAAATTATGACTAGGTGCCCATGCCCCGAT
ACCTGCTGTGACGGAGCCGCTTACCATCGCTTTGACATGCTACTGTGCTA
TGTTTGACTGTTTTGGAAACAAGTTAG
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protein sequence of jgi.p|Trimin1|11335

>Trimin1|11335|CE11334_111 ID=Trimin1|11335|CE11334_111|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=302bp
MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGK
TGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVS
AAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSS
GGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPG
GLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFEC
YGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHA
L*
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mRNA from alignment at Contig_119:324277..328243-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3967bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )
AGCACCTTGCATGGAGCTTCAGCGCGCATCAGCAGAAGATGCTTGGATCC GCTCTACATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCG ACTCTACCGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCT GGCACGGTATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAA TGGGAAGACAGGTGTGTGGGTTTGGATCTTTTGACATGATGTGTCAGATT CGAACATGGGGCAGATGGCAGCACGTGTAATTATGAAGACTTTGGCATTG CAATGGCTGTGCAGCTGCCTTTGAGCCAGTGTGTTGATGGCCTGATCATT TGGAGCGTACATGTGCCATTTATTTACAACACAGAACGTGCATCACATGG CGATGGCCTCAGCTGGCGCTCACTGTGCTGTTTTGACTCTGCCGGATGTG CTACAACAGAGCGCCGAGCGTGCTGGTCAGATCTCACACTTGTCATTACA GTCAGCACCTGTGAACAACGTCTAGCGCCGCTTCACCTTCACAAGTCAGC ATGCACTTGACAACAGGGAGAGCTAATGACCGTTTGTGCCCTACAGGCAC GGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTGCATGCACCGCAACCT CACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGACCCAAGTGCGCTGCTC ACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTCCGTGAGCGCAGCTGT GAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCGCTAGCAAGGGCGGCG GGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTAAATGCGGCCAAGGCG TGCCTGGAGAACAACGTACCCAGGTGTGTATGTGTGTACAGCACCTGACG CTGTTGATGTGCTGTCAATGTTGTTGCAAGAACAAGTGTTGAAGTAGGAT GGGCAGAATTGTCGGATGCGTCACACTCTTATCTAGAACACCGCTGGCTC GGTTGCTGTGCGGTGAAGTGGCTACTGTATTGTGTGCCTGGAGAGCAACG CGCCCACGTGTGTGTGCGCACTGACAGTGCTGGTGTGCTGTCAGTGCTAT CATAGAAAGAAGTTGCATTGGTGTGTGCGGAGCAGAGTACGTAGTTGGCA GGCGCCACAGCTGGCATGCTCCACCTAGCTGGCATGCACCATATATGCGG AATAAAGCAGTGTACCAAGGCGTACGCGGGTCGTGCGTTGCTGGTAAGCT GTGGATGCCGTTATTACCAAGGAGCCTTTGGAGTATGAGATGGGAAACTA GTTGAAATGCATCATGTTCACTCAGAGACCGTTAGGTTGGTCACTGCCGC GGAGCACAGTGGCTGGAATCATAGGTGTGAAATCACCTATCTTAGTGAAT GCAGCTGCATCTGCCTGCCTGGCGTCGTGCATGCCACCCTGTTACATCTA TAACTGGGTACGCGGGATGTGTCAAGACGCACCCAGTGTGAACACCTGCA AGCGGTGTGCTGTGCATGTGAACATATACTGCTGAAAGATTGTACCACAA ACTGCTGGAAGTTTGCACCATCACTGACAATGGTGCGTGCCGGTCGCCTT CTTCACAACACCTGCACCACATGGCCTGCTTGTCAACAGCAGCTGCGCAC TTCGTGTTCATCGATGCCGCGGATGACTGCTGCTGCACATTCCGGTGCTT CCGAGTGCGCTTAAAGGTCTGCGGCGCTTGCGCCATTGGTGTGCCCTTTG CCGGCATAGCGCGCGTATCAACGCCAACACAGACCTCTCCCCATGCACAC ACACACTACATACACGCGTGCAGGCGTCTCTCCTGCAGTGCCACAGAGAG CTGATCGCAGGTCTGCTGCCACCCTTCTGCCCCCGCAGGCTGGTAATTGT GAGCTCTGGCGGCGTCAGCAAGCCAAACAGGTGGGGGCGCGTATTGGCGC TCTATATGCATCGTCCCCTGCCACCACTCGCGCGAACATTGCCTGCCGAC AGTAGTGCCGGCGGCTGCGCAATATGGGCGGCTGCTGACCACTGCTGGGC GAGGTCAATCGCTGCCTCACTCATAGGCTGCACGCCGACTTGTCGCGAAC GTAGCACCCTGATCACGCGTCTGACGGGACAGAAACTGCCAGAACTTGCA AGAAGTTTCCGAGAGCAACAGCAACTTGGTTTAAACTGGCGCTTCCAAGA GCGCCCGGCACAGGATCATGAGCCCTTCTGAAAGTAATGGCCAGGGCTTC TGCCGCGCACGCGGTGCCCGGCGACTACTGTGGAATTCTCTAGCAGGCTC AAGTGCGGGTCTTGTGTGCTGATAACCGAGGGCAAACCTATTGGACGCCA CGTGCAAAGCACTTTGATACCTGTGCCTGCAACTCTGATCAGGACGATGA GAGCATGCACGACCTCCAACATTGTATCGCGCCATGTTGACTGAGGCTGC AACTGGCACCGCCTCCGCCGTGACGCCAGAACTCCCTCCACACGTGTGAC TCTGCAAGCAAGTGCGCGCGAACCGTGGCGTTGCAACACGAGCAGTGCAG CCACACGATAGCCTGAGCATCAACCGCCACATGGCCCCAGCACCCCTCAT ATTCCCCCCCCCCCCCCCCCCCTTGCATCCGCCGCCTGTCGCCTGCAGCC CCGTGTACAAGTTCCTCAATCTCTTTGGCGAGATCATGAAGTTCAAGGCG CTCGGCGAGGAGGAAGTGCGCGCGCTGTACGCGCAGTCCGATGCGCCCTG CTACTACACCATCGTGCGCCCGGGGGGGCTGACGCTGGCCCCCCCCCTCG GCGTCGAGCAGCTCGAGATCAACCAGGGGGATGCCATCAGTGGCCGCATT GCGCGCGCCGACGTCGCCGCCATTTGCGTGGAGGCCATCTACAGGTGGGC GAAGTAGGCGCCACCCCTGAACCATAAGCCAGGGTTACTGTCATAAGTCT TTGCACATGGCAGCGAGCTGAGTGGCGCGTAGAGTGCGCATGTCACGTTG CGAGTGTGCCATCACTATCGCTGCACGTGCAGTGCACAGCGGCGTTCACC CCAGATTGACCGGTAGCTGCCGCGCATGCAATTCAACGTGGCTGGGGGCG ACTGCGCCTTCAGCAACAAGCAGTCCAAGCCTTCGCTTCACCATGCATTT GTGGCAGACGTCCTTTGTAAGTGGTGGGCCTGCCCTCCATGTTTGGGCCT GCCGCAGCTTGTTGGGACACCCCCCCCAGCAGCCCGTGTAGCATGCGCAT GCGCTGGGCTTACTTCCATGAGCGCCGAGCCTACTGCCGCCGGGTCTGGC GCCATGCACACCATTCATTCGCAGCTCGCAGGCCGGGAGGCGTGGCGGAG CTCTTTCACCTTCAAACAGACATAGATGTCATAATGCTATGGCGCTGCAT AGCATGCTTCAGCATACGCCATTATAAGCCCCTGACATGTGCTCATCAGG CATGCCCCCTAACCCACAACTTGTGAACGTCGGCACTCTGCGTCTGTCCG TTGCTCGCTGCCGCAGCGACGCCACCCGGGACACGACGTTTGAATGCTAC GGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAAGCAACATATT GAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGCGCACACAGGG GGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGATCATGCCTTG TGACAGCAAGGGTGTAGGGGACGATGGCTTGAAGTAGCCGGTATCGCTTT GAAGTGGTCGCAATGGAGAGAACACAGCACTTTGTAGGGGCGCATTGATG GCTGACGTGCAGAGGCTAGAATATGAGGACAGTGGTATGGGTTGTTGTTG CAGTAAGCAGTAAATTATGACTAGGTGCCCATGCCCCGATACCTGCTGTG ACGGAGCCGCTTACCATCGCTTTGACATGCTACTGTGCTATGTTTGACTG TTTTGGAAACAAGTTAG
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Coding sequence (CDS) from alignment at Contig_119:324277..328243-

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=906bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )
ATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCGACTCTAC
CGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCTGGCACGG
TATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAATGGGAAG
ACAGGCACGGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTGCATGCAC
CGCAACCTCACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGACCCAAGTG
CGCTGCTCACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTCCGTGAGC
GCAGCTGTGAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCGCTAGCAA
GGGCGGCGGGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTAAATGCGG
CCAAGGCGTGCCTGGAGAACAACGTACCCAGGCTGGTAATTGTGAGCTCT
GGCGGCGTCAGCAAGCCAAACAGCCCCGTGTACAAGTTCCTCAATCTCTT
TGGCGAGATCATGAAGTTCAAGGCGCTCGGCGAGGAGGAAGTGCGCGCGC
TGTACGCGCAGTCCGATGCGCCCTGCTACTACACCATCGTGCGCCCGGGG
GGGCTGACGCTGGCCCCCCCCCTCGGCGTCGAGCAGCTCGAGATCAACCA
GGGGGATGCCATCAGTGGCCGCATTGCGCGCGCCGACGTCGCCGCCATTT
GCGTGGAGGCCATCTACAGCGACGCCACCCGGGACACGACGTTTGAATGC
TACGGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAAGCAACAT
ATTGAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGCGCACACA
GGGGGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGATCATGCC
TTGTGA
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