mRNA_13261 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149533
Unique NamemRNA_13261
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A836CLX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX7_9STRA)

HSP 1 Score: 211 bits (537), Expect = 5.370e-69
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK
Sbjct:    1 VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 115          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: G4YYH3_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4YYH3_PHYSP)

HSP 1 Score: 87.0 bits (214), Expect = 8.710e-20
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAE-SPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            V IINGEIVQD+DPR+R R Q   +  +  FG+  G A   P+AA         SPLQ LA  +G++G T+TIPAV G+P+R V+ IHL++ A ++  FGW+AL F A  Y + T+
Sbjct:    2 VHIINGEIVQDDDPRVRARQQPQQSQPQRRFGSVHGGAAAAPTAAGXXXXXXXASPLQGLARQVGLEG-TVTIPAVLGLPARPVQKIHLVVAALLTAFFGWRALVFLAFAYFLSTQ 116          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A0M0JAQ1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAQ1_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.610e-18
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    7 IINGEIVQDNDPRL--RQRTQSAATTARG-----GFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQ 339
            IINGEIV DNDPR   R+  + AA+TA G         G GA  P    A   GGA   PL ++A+ LG++G+++ IPA++ +P+R V++IH++++A ++L FGW  LA  AVL+VV 
Sbjct:    4 IINGEIVPDNDPRAIARRNPKPAASTAPGQSNIRNLHGGGGAGMPRMGGA---GGAGPGPLDQVAEALGIRGQSVEIPAIWRLPARRVQLIHIVILALLALFFGWHILAVAAVLHVVS 118          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A7S3AUU2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AUU2_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 1.180e-17
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    7 IINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTP---SAAAMAGG------AAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQ 339
            +I+GE+V DNDPR   +   + + +        GAA   P    A   AGG      AA++PL  LA  +GV+G+++ +PA+  +P RDV +IHL+L+ AV++ FGW+ LAF AVL+VVQ
Sbjct:    6 LIDGEVVPDNDPRAIAKRAGSRSGSSXXXXXXXGAASSRPRFGGAPGDAGGPGGTGAAAQNPLDALASAIGVEGQSVKVPAIAQIPGRDVPMIHLILLGAVTIFFGWRVLAFAAVLHVVQ 125          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A225WBL3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBL3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.920e-17
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            V IINGEIV D+DPR+R R Q   T     FG+       T +A      A  SP Q LA  +G++G T+TIPAV G+P+R V+ +HL + A ++  FGW+AL F A  Y + T+
Sbjct:    2 VHIINGEIVADDDPRVRARQQPQQTQPHRRFGSVHDGVSNTGAAPTGPPPAPASPFQGLARQVGLEG-TVTIPAVLGLPARPVQKVHLAVAALLTAFFGWRALVFLAFAYFLSTQ 115          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A7S0EAV1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EAV1_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 6.110e-17
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQ---SAATTARGGFGAGD------GAARPTPSAAAMAG-GAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYV 333
            V IINGEI+ D+DPR  Q+     SA   A    G+G       G+ +  PSAA  AG GA  SPL  +A+M+G++G+T  +PAV  +P+RDV +I LL++A ++L+ GWK LA  A L+V
Sbjct:   19 VLIINGEIIADDDPRAVQKRSGGGSAQPRASAPQGSGPNVQGLGGSGQSRPSAAGQAGAGAGGSPLDAVAEMIGIQGQTFLVPAVANIPARDVPLIVLLILAVLTLLVGWKVLAGAAALHV 139          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A662XBT5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBT5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.730e-16
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQSAATTAR---GGFGA----GDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            V IINGEIV D+DPR+R RTQ  +   R   GG  +    G GA      A         SPLQ LA  +G++G T+T+PAV G+PSR VE I+L + A ++ +FGW+AL F    Y + T+
Sbjct:    2 VHIINGEIVADDDPRVRARTQPQSAPQRRHVGGIASLNEVGGGAPPNAGPAPXXXXXXXASPLQGLARQVGLEG-TVTVPAVLGLPSRPVEKIYLAVAALLTALFGWRALVFLGFAYFLSTQ 122          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A662WGC2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGC2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.710e-16
Identity = 54/122 (44.26%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLRQRTQSAATTAR---GGFGAGDGAARPTPSAAA----MAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            V IINGEIV D+DPR+R RTQ  +   R   GG  + + A    PS A        GA  SPLQ LA  +G++G T+TIPA+ G+P+R VE I+L + A ++ +FGW+AL F    Y + T+
Sbjct:  365 VHIINGEIVADDDPRVRARTQPQSAPQRRHVGGIASLNEAGGGAPSNAGPXXXXXAGAGASPLQGLARQVGLEG-TVTIPAILGLPARPVEKIYLAVAALLTALFGWRALVFLGFAYFLSTQ 485          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: A0A7S0IP37_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IP37_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 2.230e-15
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    7 IINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSA-------AAMAGGAAES------PLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQ 339
            II+GEIV DNDPR   +     T      G   GA  PTP             GGAA+S      PL  LA+M+GV+G+++T+PAV+ +P+R+V +I L+L+  V+L FGW+ LA  A+L+VV 
Sbjct:   43 IIDGEIVPDNDPRAIAKRNKVGT------GRAAGAPAPTPQRHTAQTAHTTAPGGAADSAMGGASPLDALANMIGVQGQSLTVPAVWRLPAREVPLIVLILLGVVTLFFGWQVLAVAALLHVVS 160          
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Match: M4C4D9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4D9_HYAAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.240e-15
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 VRIINGEIVQDNDPRLR------QRTQSAATTARGGFGAGDGAARPTPSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 345
            V I+NGEIV D+DPR+R      QR      ++R  FG+   A    P A      A  SPLQ LA  +G++G ++TIPAV G+P+R ++ IH+++ A +S +FGW+AL F    Y + T+
Sbjct:    2 VHILNGEIVLDDDPRVRAQQKQPQRPSQEPLSSR--FGSVHNATNAPPRAPVTTVAAHPSPLQGLARQVGLEG-SVTIPAVLGMPARPLQKIHVVVAALLSAVFGWRALVFLVFAYFLSTQ 119          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149533 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLX7_9STRA5.370e-69100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
G4YYH3_PHYSP8.710e-2046.55Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A0M0JAQ1_9EUKA2.610e-1844.07Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S3AUU2_9EUKA1.180e-1741.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A225WBL3_9STRA4.920e-1743.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A7S0EAV1_9EUKA6.110e-1744.63Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A662XBT5_9STRA5.730e-1643.44Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662WGC2_9STRA9.710e-1644.26Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S0IP37_9EUKA2.230e-1541.94Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
M4C4D9_HYAAE3.240e-1540.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:322431..323024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149533|gw1.118.80.1
Max annot lvl4776|Peronosporales
EggNOG OGs2CT53@1|root,2REV7@2759|Eukaryota,3QG1A@4776|Peronosporales
Evalue2.01e-20
Seed ortholog67593.Physo141827
Hectar predicted targeting categoryother localisation
TranscriptId149855
TrackFilteredModels1
ProteinId149533
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149533gene_13261Tribonema minus UTEX_B_3156 geneContig_118 322431..323024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149533Trimin1|149533|gw1.118.80.1Tribonema minus UTEX_B_3156 polypeptideContig_118 322431..323024 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13261_2exon_13261_2Tribonema minus UTEX_B_3156 exonContig_118 322431..322647 -
exon_13261_1exon_13261_1Tribonema minus UTEX_B_3156 exonContig_118 322897..323024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13261CDS_13261Tribonema minus UTEX_B_3156 CDSContig_118 322897..323024 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13261 ID=mRNA_13261|Name=jgi.p|Trimin1|149533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_118:322431..323024- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCGCATCATCAACGGCGAGATAGTACAGGACAATGACCCCAGACTGCG
GCAAAGGACGCAAAGCGCTGCTACCACAGCGCGGGGTGGCTTTGGTGCAG
GAGATGGAGCTGCGAGACCTACCCCAAGTGCCGCCGCCATGGCGGGCGGC
GCTGCCGAAAGCCCACTCCAGCGGCTTGCAGACATGCTGGGCGTGAAAGG
CAAAACAATCACGATACCTGCAGTGTTCGGCGTGCCATCGCGGGATGTGG
AGGTGATCCACCTGCTGTTGGTGGCAGCAGTGTCGCTGATTTTCGGATGG
AAGGCGCTAGCGTTTACAGCGGTGCTCTACGTGGTGCAGACGAAG
back to top

protein sequence of jgi.p|Trimin1|149533

>Trimin1|149533|gw1.118.80.1 ID=Trimin1|149533|gw1.118.80.1|Name=jgi.p|Trimin1|149533|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
VRIINGEIVQDNDPRLRQRTQSAATTARGGFGAGDGAARPTPSAAAMAGG
AAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGW
KALAFTAVLYVVQTK
back to top

mRNA from alignment at Contig_118:322431..323024-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13261 ID=mRNA_13261|Name=jgi.p|Trimin1|149533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_118:322431..323024- (Tribonema minus UTEX_B_3156 )
GTTCGCATCATCAACGGCGAGATAGTACAGGACAATGACCCCAGACTGCG GCAAAGGACGCAAAGCGCTGCTACCACAGCGCGGGGTGGCTTTGGTGCAG GAGATGGAGCTGCGAGACCTACCCCAAGGTGCACAACTGCTGTAATACAT GATTGACTGTGCGCGCTTCAAGTGCCTACTCTTGGTGATATGTACACTTG TGGCCTCAGCATGGAGCTTGATACATTCAGAGAGCTTGCGCGCACTATTG TTTGTGTAATGCATACGGGGAGTGCAGAAGTACGCAATGCTTTTGATCTG GTGCATAATAGTTTGCGGTGTCAATTCCCATCACAGTCGTCAACGCATTT TTGTCTTGGTATGCTGTGACGTTCCAGTGCCGCCGCCATGGCGGGCGGCG CTGCCGAAAGCCCACTCCAGCGGCTTGCAGACATGCTGGGCGTGAAAGGC AAAACAATCACGATACCTGCAGTGTTCGGCGTGCCATCGCGGGATGTGGA GGTGATCCACCTGCTGTTGGTGGCAGCAGTGTCGCTGATTTTCGGATGGA AGGCGCTAGCGTTTACAGCGGTGCTCTACGTGGTGCAGACGAAG
back to top

Coding sequence (CDS) from alignment at Contig_118:322431..323024-

>mRNA_13261 ID=mRNA_13261|Name=jgi.p|Trimin1|149533|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_118:322431..323024- (Tribonema minus UTEX_B_3156 )
GTTCGCATCATCAACGGCGAGATAGTACAGGACAATGACCCCAGACTGCG
GCAAAGGACGCAAAGCGCTGCTACCACAGCGCGGGGTGGCTTTGGTGCAG
GAGATGGAGCTGCGAGACCTACCCCAAGTGCCGCCGCCATGGCGGGCGGC
GCTGCCGAAAGCCCACTCCAGCGGCTTGCAGACATGCTGGGCGTGAAAGG
CAAAACAATCACGATACCTGCAGTGTTCGGCGTGCCATCGCGGGATGTGG
AGGTGATCCACCTGCTGTTGGTGGCAGCAGTGTCGCTGATTTTCGGATGG
AAGGCGCTAGCGTTTACAGCGGTGCTCTACGTGGTGCAGACGAAG
back to top