Trimin1|351736|estExt_Genemark1.C_Ctg_990011 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351736
Unique NameTrimin1|351736|estExt_Genemark1.C_Ctg_990011
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length770
Homology
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BLAST of jgi.p|Trimin1|351736 vs. uniprot
Match: A0A836C6U7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6U7_9STRA)

HSP 1 Score: 1182 bits (3059), Expect = 0.000e+0
Identity = 769/769 (100.00%), Postives = 769/769 (100.00%), Query Frame = 0 
Query:    1 MSACSRAGNWQEALVLVSELRQRGMEPDLITGGQWCEALDVLDGLPAPLAPNVHTFNAALAACAAARQWDPAMELFHAMARRGVVDVVSFNTAISVLARMRQGQRAPADARTLAQLPPRRGGIGALGARRDAITPSPSLRGDAPQEMQAAGIRPDAVTFGALALACERSAPPLHRRASGLLREMREAGVAPTNATFASVISTVGSRHVRTGSQKCFVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGADQAITLLNHMEALGTPPNAICLQAALTACERANSNNSADCALDVFTRMRARFGGXXXXXXXXXXARGADAEWTKRGPAAYATAIRACQKNGRWRDACALLGEMRAEPWCTSDYDQCDYDQWYSALALLAGDVPDPSRPVPTLKTYLAAMAGAASAGRWEETLTLLGGMEVQGPQQRGNXXXXXXXXXXXXLQPGAVGYGAALEALATAGEHERGLALFEQTRGKAGFTPDVLCFTAALSCCHGVGDWQRALVYMREATEARLLPTRRMRLLAARTCRAAERHDELWGLYADMQMGSSXXXXXXXXXXXXDVAFLTEVLEGCGAARRADRVVELLYKQQSLCDDRALTLAALEALAAAXXXXXAADAILARAVAHGALRDPCLTLPAVDLAGLGPGAAAAVARHAXXXXXXXXPQTGAGLTLVGARGGXXXLAAAAQELERLGLVPQLARXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEAELPDTNGATDAER 769
            MSACSRAGNWQEALVLVSELRQRGMEPDLITGGQWCEALDVLDGLPAPLAPNVHTFNAALAACAAARQWDPAMELFHAMARRGVVDVVSFNTAISVLARMRQGQRAPADARTLAQLPPRRGGIGALGARRDAITPSPSLRGDAPQEMQAAGIRPDAVTFGALALACERSAPPLHRRASGLLREMREAGVAPTNATFASVISTVGSRHVRTGSQKCFVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGADQAITLLNHMEALGTPPNAICLQAALTACERANSNNSADCALDVFTRMRARFGGXXXXXXXXXXARGADAEWTKRGPAAYATAIRACQKNGRWRDACALLGEMRAEPWCTSDYDQCDYDQWYSALALLAGDVPDPSRPVPTLKTYLAAMAGAASAGRWEETLTLLGGMEVQGPQQRGNXXXXXXXXXXXXLQPGAVGYGAALEALATAGEHERGLALFEQTRGKAGFTPDVLCFTAALSCCHGVGDWQRALVYMREATEARLLPTRRMRLLAARTCRAAERHDELWGLYADMQMGSSXXXXXXXXXXXXDVAFLTEVLEGCGAARRADRVVELLYKQQSLCDDRALTLAALEALAAAXXXXXAADAILARAVAHGALRDPCLTLPAVDLAGLGPGAAAAVARHAXXXXXXXXPQTGAGLTLVGARGGXXXLAAAAQELERLGLVPQLARXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEAELPDTNGATDAER
Sbjct:    1 MSACSRAGNWQEALVLVSELRQRGMEPDLITGGQWCEALDVLDGLPAPLAPNVHTFNAALAACAAARQWDPAMELFHAMARRGVVDVVSFNTAISVLARMRQGQRAPADARTLAQLPPRRGGIGALGARRDAITPSPSLRGDAPQEMQAAGIRPDAVTFGALALACERSAPPLHRRASGLLREMREAGVAPTNATFASVISTVGSRHVRTGSQKCFVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGADQAITLLNHMEALGTPPNAICLQAALTACERANSNNSADCALDVFTRMRARFGGXXXXXXXXXXARGADAEWTKRGPAAYATAIRACQKNGRWRDACALLGEMRAEPWCTSDYDQCDYDQWYSALALLAGDVPDPSRPVPTLKTYLAAMAGAASAGRWEETLTLLGGMEVQGPQQRGNXXXXXXXXXXXXLQPGAVGYGAALEALATAGEHERGLALFEQTRGKAGFTPDVLCFTAALSCCHGVGDWQRALVYMREATEARLLPTRRMRLLAARTCRAAERHDELWGLYADMQMGSSXXXXXXXXXXXXDVAFLTEVLEGCGAARRADRVVELLYKQQSLCDDRALTLAALEALAAAXXXXXAADAILARAVAHGALRDPCLTLPAVDLAGLGPGAAAAVARHAXXXXXXXXPQTGAGLTLVGARGGXXXLAAAAQELERLGLVPQLARXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEAELPDTNGATDAER 769
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351736 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C6U7_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..28
e-value: 2.0E-4
score: 19.3
coord: 355..382
e-value: 2.7E-4
score: 18.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 145..206
e-value: 1.1E-5
score: 25.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..24
e-value: 0.048
score: 13.9
coord: 356..380
e-value: 0.037
score: 14.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 51..99
e-value: 8.5E-8
score: 32.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..27
score: 9.613118
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..86
score: 10.314641
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 454..582
e-value: 1.8E-12
score: 49.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..113
e-value: 7.8E-19
score: 70.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 219..453
e-value: 1.6E-16
score: 62.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 145..216
e-value: 1.7E-7
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..147
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 146..235
coord: 1..104
coord: 224..326
coord: 355..569

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_99contigContig_99:110571..122005 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351736mRNA_12236Tribonema minus UTEX_B_3156 mRNAContig_99 110571..122005 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351736|estExt_Genemark1.C_Ctg_990011 ID=Trimin1|351736|estExt_Genemark1.C_Ctg_990011|Name=jgi.p|Trimin1|351736|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=770bp
MSACSRAGNWQEALVLVSELRQRGMEPDLITGGQWCEALDVLDGLPAPLA
PNVHTFNAALAACAAARQWDPAMELFHAMARRGVVDVVSFNTAISVLARM
RQGQRAPADARTLAQLPPRRGGIGALGARRDAITPSPSLRGDAPQEMQAA
GIRPDAVTFGALALACERSAPPLHRRASGLLREMREAGVAPTNATFASVI
STVGSRHVRTGSQKCFVKREASVAPTTATFASVISTVGSLRVCCGAQKVL
IRREAGVASTIGTFASIISTVGRVGADQAITLLNHMEALGTPPNAICLQA
ALTACERANSNNSADCALDVFTRMRARFGGGGSGSGGGGGARGADAEWTK
RGPAAYATAIRACQKNGRWRDACALLGEMRAEPWCTSDYDQCDYDQWYSA
LALLAGDVPDPSRPVPTLKTYLAAMAGAASAGRWEETLTLLGGMEVQGPQ
QRGNTLALLGGMEVQGLQPGAVGYGAALEALATAGEHERGLALFEQTRGK
AGFTPDVLCFTAALSCCHGVGDWQRALVYMREATEARLLPTRRMRLLAAR
TCRAAERHDELWGLYADMQMGSSGGGGSSSGGGGGDVAFLTEVLEGCGAA
RRADRVVELLYKQQSLCDDRALTLAALEALAAAAAAPAAADAILARAVAH
GALRDPCLTLPAVDLAGLGPGAAAAVARHAARAAAAAAPQTGAGLTLVGA
RGGGAALAAAAQELERLGLVPQLARRRGGGSSAHVAAAALASWAAAAAAA
EAAAEAELPDTNGATDAER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf