mRNA_14891 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172955
Unique NamemRNA_14891
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A836C7S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.230e-74
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 1 
Query:    1 MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH 1155
            MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH
Sbjct:    1 MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH 385
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A836CB49_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB49_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.930e-12
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   76 ALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLG 213
            ALT LNLR+C+G+ S PESIIGQLPAL+SLQL W +DLTDLPDSLG
Sbjct:    1 ALTELNLRFCDGLTSLPESIIGQLPALESLQLRWWQDLTDLPDSLG 46
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A835YU90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU90_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.410e-9
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   67 VSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLG 213
            ++PALTALNLR+CN + S PESIIGQL  LKSLQL  C+ LT LP+SLG
Sbjct:    1 MTPALTALNLRFCNSLDSLPESIIGQLAGLKSLQLIQCQVLTSLPESLG 49
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172955 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C7S8_9STRA2.230e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB49_9STRA3.930e-1278.26Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YU90_9STRA3.410e-969.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:124635..125792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172955|e_gw1.98.22.1
Hectar predicted targeting categoryother localisation
TranscriptId173277
TrackFilteredModels1
ProteinId172955
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172955gene_14891Tribonema minus UTEX_B_3156 geneContig_98 124635..125792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14891_1exon_14891_1Tribonema minus UTEX_B_3156 exonContig_98 124635..125792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14891CDS_14891Tribonema minus UTEX_B_3156 CDSContig_98 124635..125792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172955Trimin1|172955|e_gw1.98.22.1Tribonema minus UTEX_B_3156 polypeptideContig_98 124635..125792 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14891 ID=mRNA_14891|Name=jgi.p|Trimin1|172955|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1158bp|location=Sequence derived from alignment at Contig_98:124635..125792- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAGGTGTGAGCATGACAGCGTCCTGCGGGTGCTGCAGTCACTGCA
CGGCGGAGGCCAGGCAGTCTCACCAGCGCTCACCGCGCTGAATCTGAGAT
ACTGCAACGGCATCGCCAGCCCGCCAGAGTCGATCATTGGCCAGCTGCCA
GCGCTCAAGAGCCTGCAGCTGAGCTGGTGCCGGGACCTCACTGACTTGCC
CGACTCGCTGGGCCAGCTAACGGCGCTGACTGCGCTACAGATGGCTGCTT
GCGCACGCGTCGCGCGGCTCCCAGATTCCCTAGGCCAGCTGACATCGCTG
CTGGCGCTGGACCTGTCGGACTGCGCGGCCCTCACCGCTCTGCCGGAGTT
GGCGTGCCAGCTCACAGCGCTGGTGGAACTCGACATGCACGGTTGCGTGG
GCCTCACGCACCTGCCGGAGGCTCTGGGCGATCTCTGCGCCCTCACACAC
CTCAACTTGAGCGACTGCGGGCAACTTGAGCGCCTGCCGGACTCGCTGGG
GCAGCTGACAGCGCTGCGGACGCTCAGGCTGGCAGGATGCACAGCGCTCA
CCGCACTGCCCGCATCAGCGTGGCAGCTCTCAAGCCTGACGGCGCTCAAC
CTCGCTGGCTGCCAGGCGCTGTCGGCGCTGCCGGAGCTGCTGGGCGAGCT
CACGGCGCTGAGGCAGCTGCAGCTCAGCGGCTGCGCGCGCGTCGCCCGCC
TGCCGGACTCCCTGGGGCAGCTGGCGTCGCTGACGCTGCTGGACGCGACC
GGCTGCTGCGCGCTCACGCGCCTGCCAGAGTCGCTGGGCGGGCTCGCAGC
CCTCACAACGCTCAACCTGCACCACTGCGCGGCGCTCACGGGCCTGCCCG
AGTCGCTCGGCCAGCTCGCGTCACTCAGCCTGCGAGAGCTGTGTCTGGAT
CGCTGCGCGTCTCTTGGGCCGGTGCCAGAGGCGCTCCGGCAGCAGCTGAG
GGGGCTGCCATTGCTGAGAGATGGCGGCGGCAGCTGCAGCGCGCCAGCGC
CTCCGCGCGTGCCGCTGTCAGCGGAGGCTATGGAGAAGCTGATTCGTGAT
CACCACAGGATGCATGCTGAAGTCGCTGCTACCGTGCGCACGTCTGATGC
CATCATCCGTGAGCAGCGCGACAGCGCTGCAGACCGGCTTGCAGCGCTGT
TTCATTGA
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protein sequence of jgi.p|Trimin1|172955

>Trimin1|172955|e_gw1.98.22.1 ID=Trimin1|172955|e_gw1.98.22.1|Name=jgi.p|Trimin1|172955|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=386bp
MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLP
ALKSLQLSWCRDLTDLPDSLGQLTALTALQMAACARVARLPDSLGQLTSL
LALDLSDCAALTALPELACQLTALVELDMHGCVGLTHLPEALGDLCALTH
LNLSDCGQLERLPDSLGQLTALRTLRLAGCTALTALPASAWQLSSLTALN
LAGCQALSALPELLGELTALRQLQLSGCARVARLPDSLGQLASLTLLDAT
GCCALTRLPESLGGLAALTTLNLHHCAALTGLPESLGQLASLSLRELCLD
RCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRD
HHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH*
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mRNA from alignment at Contig_98:124635..125792-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14891 ID=mRNA_14891|Name=jgi.p|Trimin1|172955|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1158bp|location=Sequence derived from alignment at Contig_98:124635..125792- (Tribonema minus UTEX_B_3156 )
ATGCGGAGGTGTGAGCATGACAGCGTCCTGCGGGTGCTGCAGTCACTGCA
CGGCGGAGGCCAGGCAGTCTCACCAGCGCTCACCGCGCTGAATCTGAGAT
ACTGCAACGGCATCGCCAGCCCGCCAGAGTCGATCATTGGCCAGCTGCCA
GCGCTCAAGAGCCTGCAGCTGAGCTGGTGCCGGGACCTCACTGACTTGCC
CGACTCGCTGGGCCAGCTAACGGCGCTGACTGCGCTACAGATGGCTGCTT
GCGCACGCGTCGCGCGGCTCCCAGATTCCCTAGGCCAGCTGACATCGCTG
CTGGCGCTGGACCTGTCGGACTGCGCGGCCCTCACCGCTCTGCCGGAGTT
GGCGTGCCAGCTCACAGCGCTGGTGGAACTCGACATGCACGGTTGCGTGG
GCCTCACGCACCTGCCGGAGGCTCTGGGCGATCTCTGCGCCCTCACACAC
CTCAACTTGAGCGACTGCGGGCAACTTGAGCGCCTGCCGGACTCGCTGGG
GCAGCTGACAGCGCTGCGGACGCTCAGGCTGGCAGGATGCACAGCGCTCA
CCGCACTGCCCGCATCAGCGTGGCAGCTCTCAAGCCTGACGGCGCTCAAC
CTCGCTGGCTGCCAGGCGCTGTCGGCGCTGCCGGAGCTGCTGGGCGAGCT
CACGGCGCTGAGGCAGCTGCAGCTCAGCGGCTGCGCGCGCGTCGCCCGCC
TGCCGGACTCCCTGGGGCAGCTGGCGTCGCTGACGCTGCTGGACGCGACC
GGCTGCTGCGCGCTCACGCGCCTGCCAGAGTCGCTGGGCGGGCTCGCAGC
CCTCACAACGCTCAACCTGCACCACTGCGCGGCGCTCACGGGCCTGCCCG
AGTCGCTCGGCCAGCTCGCGTCACTCAGCCTGCGAGAGCTGTGTCTGGAT
CGCTGCGCGTCTCTTGGGCCGGTGCCAGAGGCGCTCCGGCAGCAGCTGAG
GGGGCTGCCATTGCTGAGAGATGGCGGCGGCAGCTGCAGCGCGCCAGCGC
CTCCGCGCGTGCCGCTGTCAGCGGAGGCTATGGAGAAGCTGATTCGTGAT
CACCACAGGATGCATGCTGAAGTCGCTGCTACCGTGCGCACGTCTGATGC
CATCATCCGTGAGCAGCGCGACAGCGCTGCAGACCGGCTTGCAGCGCTGT
TTCATTGA
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Coding sequence (CDS) from alignment at Contig_98:124635..125792-

>mRNA_14891 ID=mRNA_14891|Name=jgi.p|Trimin1|172955|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1158bp|location=Sequence derived from alignment at Contig_98:124635..125792- (Tribonema minus UTEX_B_3156 )
ATGCGGAGGTGTGAGCATGACAGCGTCCTGCGGGTGCTGCAGTCACTGCA
CGGCGGAGGCCAGGCAGTCTCACCAGCGCTCACCGCGCTGAATCTGAGAT
ACTGCAACGGCATCGCCAGCCCGCCAGAGTCGATCATTGGCCAGCTGCCA
GCGCTCAAGAGCCTGCAGCTGAGCTGGTGCCGGGACCTCACTGACTTGCC
CGACTCGCTGGGCCAGCTAACGGCGCTGACTGCGCTACAGATGGCTGCTT
GCGCACGCGTCGCGCGGCTCCCAGATTCCCTAGGCCAGCTGACATCGCTG
CTGGCGCTGGACCTGTCGGACTGCGCGGCCCTCACCGCTCTGCCGGAGTT
GGCGTGCCAGCTCACAGCGCTGGTGGAACTCGACATGCACGGTTGCGTGG
GCCTCACGCACCTGCCGGAGGCTCTGGGCGATCTCTGCGCCCTCACACAC
CTCAACTTGAGCGACTGCGGGCAACTTGAGCGCCTGCCGGACTCGCTGGG
GCAGCTGACAGCGCTGCGGACGCTCAGGCTGGCAGGATGCACAGCGCTCA
CCGCACTGCCCGCATCAGCGTGGCAGCTCTCAAGCCTGACGGCGCTCAAC
CTCGCTGGCTGCCAGGCGCTGTCGGCGCTGCCGGAGCTGCTGGGCGAGCT
CACGGCGCTGAGGCAGCTGCAGCTCAGCGGCTGCGCGCGCGTCGCCCGCC
TGCCGGACTCCCTGGGGCAGCTGGCGTCGCTGACGCTGCTGGACGCGACC
GGCTGCTGCGCGCTCACGCGCCTGCCAGAGTCGCTGGGCGGGCTCGCAGC
CCTCACAACGCTCAACCTGCACCACTGCGCGGCGCTCACGGGCCTGCCCG
AGTCGCTCGGCCAGCTCGCGTCACTCAGCCTGCGAGAGCTGTGTCTGGAT
CGCTGCGCGTCTCTTGGGCCGGTGCCAGAGGCGCTCCGGCAGCAGCTGAG
GGGGCTGCCATTGCTGAGAGATGGCGGCGGCAGCTGCAGCGCGCCAGCGC
CTCCGCGCGTGCCGCTGTCAGCGGAGGCTATGGAGAAGCTGATTCGTGAT
CACCACAGGATGCATGCTGAAGTCGCTGCTACCGTGCGCACGTCTGATGC
CATCATCCGTGAGCAGCGCGACAGCGCTGCAGACCGGCTTGCAGCGCTGT
TTCATTGA
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