mRNA_14913 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|101569
Unique NamemRNA_14913
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 6.520e-141
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 
Query:   58 MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
            MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT
Sbjct:    1 MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 210
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: D7G770_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G770_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.230e-82
Identity = 123/177 (69.49%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:  157 SSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
            SS+S+P   +YGE  +TV   SSA+ AL+KSCYFKIDF I E+ATVYEAVQRFAAYNIGALAVT+   KV+GI+SERDYV K+ALLG+ S++T VKE+ATMGAN+++A KSD++ DCM KM+ARDIRHLPV+DEE G VVGMLS+KDL+KEV  EKE ++ K+ DFKLGRGGFFEHT
Sbjct:   34 SSMSDPKPRNYGEVATTVENRSSAKDALQKSCYFKIDFGISEEATVYEAVQRFAAYNIGALAVTNDDKKVIGIVSERDYVSKVALLGKASKSTPVKEIATMGANLVIASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 210
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.120e-70
Identity = 111/167 (66.47%), Postives = 134/167 (80.24%), Query Frame = 1 
Query:  187 YGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
            YG+ P  +   S+A +A EKSCYFKIDFKI +DA+VYEAVQ+FAAYNIG L V  KG +V GIISERDYV KIALLGR+S  TKV EV T GAN++VA+ +DS+ +CM KMLARDIRHLPV++EE+G VVGMLS+KDLIKE+  EK+ +I KL DF +GRG FFEH 
Sbjct:   22 YGDAPEDIGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVM-KGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEHV 187
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA)

HSP 1 Score: 225 bits (573), Expect = 8.480e-70
Identity = 118/187 (63.10%), Postives = 143/187 (76.47%), Query Frame = 1 
Query:  133 AGAAWRLSSSLSEPG--SHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
            A  A R  SS+S+P      YG+ P  +   S+A +A EKSCYFKIDFKI +DA+VYEAVQ+FAAYNIG L V  KG +V GIISERDYV KIALLGR+S  TKV EV T GAN++VA+ +DS+ +CM KMLARDIRHLPV++EE+G VVGMLS+KDLIKE+  EK+ +I KL DF +GRG FFEH 
Sbjct:   98 AAPAVRAWSSMSDPTYMQRRYGDAPEDIGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVM-KGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEHV 283
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A4D9D580_9STRA (CBS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D580_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.600e-67
Identity = 112/178 (62.92%), Postives = 138/178 (77.53%), Query Frame = 1 
Query:  157 SSLSEPG--SHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEH 684
            SSLSEP   S  Y + P+++ E  +A++A EKSCYFKIDFKI E+A +YEAVQRFAAYNIGALAVTD+ GKV+G+ISERDYVCK         +T V EV T G+NI+VAK +DS+  CM+KMLA+DIRHLPV+D+E   VVGMLSIKDLIKE+  EK+ +I KL DF LG+G FF+H
Sbjct:   41 SSLSEPSYLSRPYKDIPASIGEKGTAQTAWEKSCYFKIDFKIPEEAMMYEAVQRFAAYNIGALAVTDQEGKVIGVISERDYVCK---------STTVGEVCTRGSNIVVAKTTDSIATCMKKMLAKDIRHLPVVDDEKKEVVGMLSIKDLIKELQKEKDDIIEKLTDFNLGKGAFFQH 209
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.690e-65
Identity = 107/156 (68.59%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:  220 SSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
            S+A +A EKSCYFKIDFKIDEDA+VYEAVQRFAAYNIG L V  K GKV GIISERDYV K+ALLGR+S   KV E+ T  AN++VA  SDS+ DCM  MLARDIRHLPV+ E+ G VVGMLS+KDLIKE+  EK+ +I+KL DF +GRG +FEH 
Sbjct:   71 STASNAWEKSCYFKIDFKIDEDASVYEAVQRFAAYNIGCLVVVSKEGKVAGIISERDYVTKVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIRHLPVVGED-GDVVGMLSVKDLIKELVKEKDEMISKLTDFTMGRGAYFEHV 225
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A6C0H1P6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0H1P6_9ZZZZ)

HSP 1 Score: 187 bits (476), Expect = 1.140e-56
Identity = 90/152 (59.21%), Postives = 114/152 (75.00%), Query Frame = 1 
Query:  223 SARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
            SA S  + SCY KIDFKI E+ TV  A+QRF A+NIG LAVTD   KVVG++SERDYV K+A LG+     K+KE+ T G +II+AKK DSL  CM KML +DIRHL V+D+++   VGM+SIKDLIKE+  +K+ +I +L DFKLG+GGFF
Sbjct:   17 SALSVFKNSCYHKIDFKISEENTVNSAIQRFTAFNIGCLAVTDSANKVVGVLSERDYVNKVAALGKNGDVVKIKEICTYGPHIIIAKKDDSLEQCMNKMLFKDIRHLLVIDDKNEEFVGMISIKDLIKEIMKDKDDMITRLTDFKLGKGGFF 168
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S3LGV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGV2_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.390e-56
Identity = 94/158 (59.49%), Postives = 120/158 (75.95%), Query Frame = 1 
Query:  205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
            TV++ ++ R AL+ S Y +IDF I EDA VY+AVQ+FAA+NIG L VTDK G + GI+SERDY+CKIALLGR S+ T VKE+AT GANII AK  +++  CM KM+ + IRHLP++D+ S TV+GM+SIKDL+K V  EKE  I  L DF LG+GG F
Sbjct:   31 TVSDAATVRDALKFSGYSEIDFTIPEDAKVYDAVQKFAAFNIGCLVVTDKAGNMTGIVSERDYICKIALLGRTSKETPVKEIATAGANIITAKSDETVEVCMEKMMQKGIRHLPIVDD-SETVIGMVSIKDLVKTVVQEKEDTIKVLSDFALGKGGHF 187
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A1Z5KQF6_FISSO (CBS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQF6_FISSO)

HSP 1 Score: 187 bits (474), Expect = 3.580e-56
Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:  205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
            TV ++S+A  ALE S Y +I+FKIDEDA VY+AVQRFAA NIG L  TDK G + GIISERDY+CK+ALLGR S+ T ++E++T GANII AK ++++  CM KM+ + IRHLPV+D+ +G+V G++SIKDL+K V  EKE  I  L DF LG+GG F
Sbjct:   26 TVADVSTADDALELSGYKEINFKIDEDAMVYDAVQRFAANNIGCLVTTDKAGNMTGIISERDYICKVALLGRTSKETPIREISTRGANIITAKGNETVETCMEKMMTKGIRHLPVVDD-AGSVTGLISIKDLVKTVVSEKEKTIKVLSDFALGKGGHF 182
[Close]
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S2XS19_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS19_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.640e-55
Identity = 95/158 (60.13%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:  205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
            TV E   A  A +KSCY  IDF I EDATVY+AVQRF+AY+IGAL  TD  G + G++SERDYV KIALLG+ S+ TK+ E++T  AN+I A   DS+  CM KML+RDIRHLP+LD++ G VVGMLSIKDL+K +  EKE  I  L DF LG+GG F
Sbjct:   75 TVEEEVLASDAFKKSCYVAIDFTIAEDATVYDAVQRFSAYDIGALVTTDTDGSIAGVVSERDYVTKIALLGKTSKDTKISEISTKSANLITASPKDSIEICMGKMLSRDIRHLPLLDDD-GKVVGMLSIKDLVKALVAEKEKTIQVLSDFALGKGGHF 231
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGF7_9STRA6.520e-141100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G770_ECTSI1.230e-8269.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1XTH5_9STRA1.120e-7066.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U998_9STRA8.480e-7063.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D580_9STRA3.600e-6762.92CBS domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7R9UAT3_9STRA2.690e-6568.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6C0H1P6_9ZZZZ1.140e-5659.21Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S3LGV2_9STRA1.390e-5659.49Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1Z5KQF6_FISSO3.580e-5658.86CBS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S2XS19_9STRA1.640e-5560.13Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:320643..326285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|101569|CE101568_29
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
DescriptionDomain in cystathionine beta-synthase and other proteins.
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
Evalue4.04e-84
Seed ortholog2880.D7G770
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionCBS domain
Ec32 orthologEc-01_010830.1
TranscriptId101891
TrackFilteredModels1
ProteinId101569
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|101569gene_14913Tribonema minus UTEX_B_3156 geneContig_98 320643..326285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|101569Trimin1|101569|CE101568_29Tribonema minus UTEX_B_3156 polypeptideContig_98 320700..326211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14913_1exon_14913_1Tribonema minus UTEX_B_3156 exonContig_98 320643..320707 +
exon_14913_2exon_14913_2Tribonema minus UTEX_B_3156 exonContig_98 320933..320994 +
exon_14913_3exon_14913_3Tribonema minus UTEX_B_3156 exonContig_98 321892..321935 +
exon_14913_4exon_14913_4Tribonema minus UTEX_B_3156 exonContig_98 323203..323373 +
exon_14913_5exon_14913_5Tribonema minus UTEX_B_3156 exonContig_98 324816..324911 +
exon_14913_6exon_14913_6Tribonema minus UTEX_B_3156 exonContig_98 325960..326285 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14913UTR5_14913Tribonema minus UTEX_B_3156 five_prime_UTRContig_98 320643..320699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14913CDS_14913Tribonema minus UTEX_B_3156 CDSContig_98 320700..320707 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14913UTR3_14913Tribonema minus UTEX_B_3156 three_prime_UTRContig_98 326212..326285 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=764bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGCTCTTGGAGGAGGGCGAGGAAGCACCAGGAAGCAGAGGCGAGCTG
GCGTGCGATGCAGAGAGCGGTGGCATGCACCGCAGCGAGGACACTGCGGA
GACTAGGCAAACAACGACTTGCTGAAGCACACGCGGGAGCGGCGTGGCGG
CTGAGCAGCAGCCTCTCAGAGCCGGGCAGCCACTCATACGGCGAGACGCC
GTCGACCGTCAACGAGCTGAGCAGCGCGCGCTCGGCGCTGGAGAAGTCCT
GCTACTTCAAGATCGACTTCAAGATCGATGAGGACGCCACCGTCTACGAG
GCGGTGCAGCGGTTCGCTGCGTACAACATCGGCGCGCTCGCGGTTACGGA
CAAGGGGGGCAAGGTGGTGGGCATCATCTCGGAGCGCGACTATGTGTGCA
AGATTGCGCTGCTCGGACGACAGAGCCAGACCACCAAGGTGAAGGAGGTG
GCGACCATGGGCGCCAACATCATCGTCGCCAAGAAGAGCGACTCGCTGCA
CGACTGCATGCGCAAGATGCTCGCGCGCGACATCCGCCACCTGCCCGTGC
TCGACGAGGAGTCGGGAACGGTCGTCGGCATGCTCTCCATAAAGGACCTT
ATTAAGGAGGTCGCGCATGAGAAGGAAGCCCTCATCGCCAAGCTCAAGGA
CTTCAAGCTTGGCCGCGGCGGGTTCTTCGAGCACACTTGAGGGGGGGGTC
GTGGACCACTACTTCAAGTTGAAGTTGAGCAGGCCCTCATCGCCAACTCA
AGGACTTCAAGGTG
back to top

protein sequence of jgi.p|Trimin1|101569

>Trimin1|101569|CE101568_29 ID=Trimin1|101569|CE101568_29|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPST
VNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKG
GKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDC
MRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFK
LGRGGFFEHT*
back to top

mRNA from alignment at Contig_98:320643..326285+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5643bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )
GGCAGCTCTTGGAGGAGGGCGAGGAAGCACCAGGAAGCAGAGGCGAGCTG
GCGTGCGATGCAGAGGTGAGCGCCAGCGCAGATTCCCTTCCCGCTTCTAT
GCAAGCAGGAAGTGCATCTCCACGAGGTCATGAGACAGCGCCTACACACA
GTGCAAAGCAAGCGGCACGCGCGCTTCAGTACACGTGCGGGCACGCTGCT
GCAAGCACGAGCGTTCCTTGCTGCCACCGTCATCAATGTGTGACGTCGCG
CCCGTTGCTTGCTTCGTTGTCTGGTGGTGACGCGTTGCAGAGCGGTGGCA
TGCACCGCAGCGAGGACACTGCGGAGACTAGGCAAACAACGACTTGCTGA
AGGTACAGCAACATGTTATAGCATTCTTGCAGAATATCAATACAATTGTG
GATTCGAAACATGTTCAGCGAATGGAAGATTTCGCAGTTGACGCGGTTGA
GATGGCACTGTCCTGCTCCCTGCAGCGTGCCGCGCCATAAGCATGAGATC
GACTCTTTGAAGCCCGGACGGCTATGGGAGAACATCAACGCAGGCGAGGT
CGCTGTTCTTGCCATCGTTGTTCATTTCTGGACATCTAGAGCAGCATGTA
TGGCGACTTTGTCTGATGTTTTGCAGCCTGCAAGGGAAAAAATGCGACGC
GCTGATGCAGCACTCCATTATGTATCTTGGCAGGTGGAGTCACCTGACCC
TAAGTTAAACCTGCCGTAGAGGAGGCCTGCAGGTGTAGGTGTATGCTGAC
ATAGCATTGTGGCGGCACATGCATTCTGCACATCTGCAGTGCACCAGCTG
CGCCCAGAAAATGCTCGTCGCTGCTGCCGCCGATAAAACTGCGTCTCCAG
CAGCTGATTTTCAATCGTAAGCTTGAGTACCGCATGAGCTGAGAACTGTC
AGCTACTTAGCGGGAACGCCAGCCGCAACAGTTACATTCACTGTGCTGCG
TACTTATCATCTTCACAAACAGGCTGAAGCAGCGGCTCATGCTGCGCTTT
GTAAGGAGCAGTCGTTGACACTACTGTAAAGGACCAGCTGTGCAGCCGTG
CGCTACGTGAGGAAATACCCACTCACTTGCAGTAGACACATTGTTTACAG
ACGTGTTTGCCGCGGACGGCTTAGGGTAAGGGTTAGGGTCAGGGTTAGAT
CTTGCGTCACGGCAAGCTCACGCAGCCAATCGCACTTCGGCAGTGCATTT
ATCAGCGCCCCTCACGCGCACTTCGATGCGGTCGCGCACTGTCGTGCAGC
ACACGCGGGAGCGGCGTGGCGGCTGAGCAGCAGCCTCTCAGAGGTGAGTC
GCACTTGAACTTCAGAACTTGAACTTCAGTGTGCTGCACTTGCACTTGTA
GTGGCCTGGGCGCTGTGAACGGAAGCATGGGTACGTGCATCGTACCCCGC
GGCGCCCCCCATTCGGACCCCGTCTCAGCCAGTTTGCCCCAGCGAAACGC
ATGGCGGCTTGGACAGACTTGGGGTTAGGTCTAACCTGATTCTGCGGTGA
CGCATGCGTCTGCTGACTTGCGCACAAGACTCGACATGCGAATGAAGGCG
CAAAAAAAAAGGCAAGCCTGACTCTGGCTTCAAACCTTACCCTGGACAAG
AGAGCTTATTGGGCTTGACGTGTGCCAAAGTCTGATCAACTGGGCAGAAG
CGCCGCCCGATAAAAATTATGCGCATACACATGCCCTCAGTGACTGTTTT
GTCGAATTCGGGTAAGACCGGGTGTCACTGGCTTGTTCTCCGCGGTGCTG
GCAAACTCGGGAACATGGCTTCTGATTAGATCCAGTTGAGACTGCGTAGT
ACTGGCTCGCATTCCGCCATGCTGACAAGCTTCTGTTTTGTCATGTAAGA
ACAAAGAGGGCGAGGCATTTTTCGCTGCCGCTTGGGGCCGCATGCTGCGA
CTATTCCGGCCAACGCATACACGCATGCGTGCAAATTGGTGCAATGCCAC
CCACACTCACGCAGGCATGCACATACACATACATGCATGCATACACGCGT
ACATCCAGTGCACATAATTTATGCTGTGTACATACGTGCCTACCCGCGGT
CTATACATGCCTACATGTAGCATACATACATACTGTGTATACAGCGCTCC
ACGTGGCGTACTCGTTGCGTGCATTGGCGCACGTGGCAGAGCCCAAAGGG
GGGTGGACAGATCGATGATGATAATCTGGGGGGGGAGATTCCATGCAACG
GTGTCATTCAGGAGTGATCACCGCGCAAATCGAGACACGTTCAAGTTGTC
ACAAGATACACGTAGACACTGGTAGCAAGCTTGCCATCAACCACCTGTGC
TTTTTGCGCCCTAAGCGGGATTTACATCACAGTTCACACACACCTATACG
TGACACATGTGCGTACTTCAAGTTGAAGTACATGCGCATATATGGTCGAT
CGCAGCCGGGCAGCCACTCGTACGGCGAGACGCCGTCAACCGTCAACGTA
CGTGTACGCAAATGCATACATGCACACATGCTAGCGCACCTGTGTTACAT
GCCTACCTACATGAGTGAACTTCAAGCTGAAGTACATGCGTACGCGTGTG
TCGATCGCAGCCGGGCAGCCACTCATACGGCGAGACGCCGTCGACCGTCA
ACGAGCTGAGCAGCGCGCGCTCGGCGCTGGAGAAGTCCTGCTACTTCAAG
ATCGACTTCAAGATCGATGAGGACGCCACCGTCTACGAGGCGGTGCAGCG
GTTCGCTGCGTACAACATCGGCGCGCTCGCGGTACGTTCGAAAAACTCTC
TATGTACATACCGCACGCGTGATCTGTGTCTTGCGTACCGTAGTACCGTG
TGTACATGCATGCCTTCGCTGCGTACCGCAGTTTTGTGCACCCCGCCGCA
GGCACTACGCCTTCGCCGCGTACCGCATTGGCGCTGCTGCGGTTTCCATC
TCTGTATGAACACCGTATCTACATGCGCACTCAAGGAGGCCTGTGTATCA
TGTAAATTGCGGCATGTGTAATATAACGGATCACGCCCAGCTCTCTCTAA
TAGAGTCTCTATGGCATGCGTGTCCAGCGAAGCCTGACGCACTGGCGCAG
TCGTTGACGCTCCCGCGCTCGCTCTTGAACTTGAGGAAGAACTTTATGCA
GGGGCCGTGCCGCGAGTGCATGCGGGGTTGCCCAGCTGAAGTTTGAGCAT
CGCACCGCACTCGTCCGAACTGCTTCCATCCATGACGTTCGTTCGTCTCG
CGCGCGCGCGGACGGCGCTCAACCTAACCCTAACCCTAACCCTATGCCAT
GGCTCGCGTACGCACGTATGCATGCATCATAGCGATGCCGCTCGCACGCC
CTCTGCGCTTAGGGTTAGGGTTAGGCCTAACCCTACAGCGGCGCCACGCC
GCGTGGCCAGAGCGCGCGCGTCACTGCCTCCGCCGCTGCTGCGGCCGGCA
CGCGCGTTGCTGCCTACTGTCGACTGCACAGTGCCCTGTAGTGATGCGTA
CTTTATGCTAATCTGCCCTCGGCGTGCTCCGGCATCCGAGCAGCGGTAGC
ACGAGCGAACGCGCATGCAGAGCCTCCACGCAGTCAGTACATACATACCC
ATTGAGCACCGTGGCAGCGCTCACCGCAGAGGTGCGACGTCTCCTGCCGC
TGCGTGCTGGCGCTGACGGCGCACATCTGCAGAAGTTCAACAGCAGAAGT
TCAACAACGGGCGCCCGCACGGCAGTCGGCTTTGACCGCAAGCTCTCTGC
GCATTTAAGCAACGGTGGTTTTGGGCGTGCTAAGCGTGGTTGCCACACAG
TACTTCAGCGACTGCAGCGCAGTTGTCACAGTTTCAGTGTTCCGCAGTCT
CAGCTTTCTTTCTCCGCGGCTAGCGCGGAACTTCGCCAACTGCTGCATTC
AAGAAGCTCAGATTTCAACAAGTCGGCAGAGGTGAATCTGGCCTCGTCAC
AGCCGACTCACGTCTCCCGGCGCACTCAGCACCTCCGCAAGGCTGTTGCG
TTTTCCACGTGCGTCAGGTGACGGGCAAGGGGCGCTAATCAATTCTTCAA
AATTGAACTTCAACTTGGTGAACCGCCCTACTCGCCGTCTCCCCGCGCAC
TCGGCTTGTCTGCGCAACGCGTGTTTAAACTTCAACTTGTTGATTCGCCC
TTTGTCACAACCAACTCACGTTCCCCCCCGCGCACTCTGCACATCTGCGC
GACTTATTGCGTTTTTGCAACAGGTTACGGACAAGGGGGGCAAGGTGGTG
GGCATCATCTCGGAGCGCGACTATGTGTGCAAGATTGCGCTGCTCGGACG
ACAGAGCCAGACCACCAAGGTATGTATGTATGTAGTTGAACCTCAAGTTT
GAACTTGTGTCATCTTGCGCTCACGATGTGTCCGAGCGCGACTACGTGTG
CAAGATTGCCCTGCTCGGGCGGCAGAGCCAGACCACCAAGGTATGTATAC
GCATGTAGGTGAACTTCAAGGGTGAACTTGTGCCATTTGCACTCAGATCA
TGTCCGAGCACATGTAGAAGAGAATGTTCATGTTGCGAAGTTAGTAATCA
GATTATCCCCGAGCGCGCCTATGTGTGCAAGATTGCGCTGCTCGAACGGC
AAGTCAGACCACTAAGGCATGCACAAGTATGCTTTGTCACAGGAAGAAAA
TCATGCGTGCAGGCTAGCACGCCACACCGCACCCATGCATAGCGCAGAGG
CAGAACGGAGACAGGCACAAGGCGACACACACACTCGTGGTGTTGCCGGA
AAGGAAGGTGGAAAGGAAGGTGGAGGAGGCTGAAGGAAGTGATATCATCA
TCAACAGCAAACCTGCGCGTGCCAGCTCAGGATTGCCGAGTCAGCTCAAT
GATCTGCAGCTGATCTCGAACAGCTCGCGGACAGAACTGCACGTCAACTA
CACCGTCATGTGCAAACCTCAACCAGGGCATCTGACTCTTATTCTGCAAC
AGCGCCGTATTGCAACACACGCATCACGGCTTGAACAGGCGTGAAGTGCG
CTAAGTGCATCTGCACGCGAATCACATCAGAGCTGCGCCTGTGTGTGCAA
ACGGCACTGCTCAAACGTCACAGCCAGAGGATTACAAGGCATGTATCTAC
ACGCTGTCGAGCTTTAAGGCCTGAACTGTTGTGGATTGTACTGAGTACGG
CGAGCCTGGCAGCCACTAACTCGCGTCGCGCCGCGCGCAGGTGAAGGAGG
TGGCGGCCATGGGCGCCAATATCACCGTCGCTAAGAAGGGCGGCTTGCTG
CACGACTGCATGCATAAGATGCTCGTGCGCCTCACCTGCCCACTTCAACT
TTATCTTGAAGTATTAGTTCACGAGCTCTCCCTCCCTGCGTCGCGCCGTT
TCGCGCCGCGCGTGCAGGTGAAGGAGGTGGCGACCATGGGCGCCAACATC
ATCGTCGCCAAGAAGAGCGACTCGCTGCACGACTGCATGCGCAAGATGCT
CGCGCGCGACATCCGCCACCTGCCCGTGCTCGACGAGGAGTCGGGAACGG
TCGTCGGCATGCTCTCCATAAAGGACCTTATTAAGGAGGTCGCGCATGAG
AAGGAAGCCCTCATCGCCAAGCTCAAGGACTTCAAGCTTGGCCGCGGCGG
GTTCTTCGAGCACACTTGAGGGGGGGGTCGTGGACCACTACTTCAAGTTG
AAGTTGAGCAGGCCCTCATCGCCAACTCAAGGACTTCAAGGTG
back to top

Coding sequence (CDS) from alignment at Contig_98:320643..326285+

>mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )
ATGCAGAGAGCGGTGGCATGCACCGCAGCGAGGACACTGCGGAGACTAGG
CAAACAACGACTTGCTGAAGCACACGCGGGAGCGGCGTGGCGGCTGAGCA
GCAGCCTCTCAGAGCCGGGCAGCCACTCATACGGCGAGACGCCGTCGACC
GTCAACGAGCTGAGCAGCGCGCGCTCGGCGCTGGAGAAGTCCTGCTACTT
CAAGATCGACTTCAAGATCGATGAGGACGCCACCGTCTACGAGGCGGTGC
AGCGGTTCGCTGCGTACAACATCGGCGCGCTCGCGGTTACGGACAAGGGG
GGCAAGGTGGTGGGCATCATCTCGGAGCGCGACTATGTGTGCAAGATTGC
GCTGCTCGGACGACAGAGCCAGACCACCAAGGTGAAGGAGGTGGCGACCA
TGGGCGCCAACATCATCGTCGCCAAGAAGAGCGACTCGCTGCACGACTGC
ATGCGCAAGATGCTCGCGCGCGACATCCGCCACCTGCCCGTGCTCGACGA
GGAGTCGGGAACGGTCGTCGGCATGCTCTCCATAAAGGACCTTATTAAGG
AGGTCGCGCATGAGAAGGAAGCCCTCATCGCCAAGCTCAAGGACTTCAAG
CTTGGCCGCGGCGGGTTCTTCGAGCACACTTGA
back to top