mRNA_14241 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351694
Unique Name	mRNA_14241
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351694 vs. uniprot
Match: A0A835YGE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGE7_9STRA)

HSP 1 Score: 509 bits (1310), Expect = 4.370e-176
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 1

Query:    1 MATTSAFSVGVVDAMEAEKKLNMSLEDIIKARHEADKQARDPQGXXXXXXXXXXXXXXXKPTAAERAIGRAAARRDAALASKRGLPAPMDVDAVAQKRVQKQVARRLVHQHLASKASSALSAGAAPKTKRVGVKQXXXXXXXXXXXXXXXXXGMVADRAVGAVVKQPKSVRVAAKVKAGSANAALRARAXXXXXXXXXXXXXXVQQRARALRPQQLRKNAAPVPXXXXXXXXXXXXXXXXXLNSDNFNDGSRMRASTAAAFQFAAPAPAAARQHAKRVAAMAAALEQQTAEWRQQRRNRPKCRVELQGGVRSMAAPSAADAGSSSGDRAVRKRVXXXXXXXXXXXXXXXXXXXXXXXXXERRGFAAKTLSAXXXXXXLPRASPAGRKQGKRRALTAMSLAQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAARRG 1332
            MATTSAFSVGVVDAMEAEKKLNMSLEDIIKARHEADKQARDPQGXXXXXXXXXXXXXXXKPTAAERAIGRAAARRDAALASKRGLPAPMDVDAVAQKRVQKQVARRLVHQHLASKASSALSAGAAPKTKRVGVKQXXXXXXXXXXXXXXXXXGMVADRAVGAVVKQPKSVRVAAKVKAGSANAALRARAXXXXXXXXXXXXXXVQQRARALRPQQLRKNAAPVPXXXXXXXXXXXXXXXXXLNSDNFNDGSRMRASTAAAFQFAAPAPAAARQHAKRVAAMAAALEQQTAEWRQQRRNRPKCRVELQGGVRSMAAPSAADAGSSSGDRAVRKRVXXXXXXXXXXXXXXXXXXXXXXXXXERRGFAAKTLSAXXXXXXLPRASPAGRKQGKRRALTAMSLAQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAARRG
Sbjct:    1 MATTSAFSVGVVDAMEAEKKLNMSLEDIIKARHEADKQARDPQGXXXXXXXXXXXXXXXKPTAAERAIGRAAARRDAALASKRGLPAPMDVDAVAQKRVQKQVARRLVHQHLASKASSALSAGAAPKTKRVGVKQXXXXXXXXXXXXXXXXXGMVADRAVGAVVKQPKSVRVAAKVKAGSANAALRARAXXXXXXXXXXXXXXVQQRARALRPQQLRKNAAPVPXXXXXXXXXXXXXXXXXLNSDNFNDGSRMRASTAAAFQFAAPAPAAARQHAKRVAAMAAALEQQTAEWRQQRRNRPKCRVELQGGVRSMAAPSAADAGSSSGDRAVRKRVXXXXXXXXXXXXXXXXXXXXXXXXXERRGFAAKTLSAXXXXXXLPRASPAGRKQGKRRALTAMSLAQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAARRG 444

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351694 vs. uniprot

BLAST of jgi.p|Trimin1|351694 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YGE7_9STRA	4.370e-176	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_97	contig	Contig_97:507852..510797 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351694\|estExt_Genemark1.C_Ctg_970054
Hectar predicted targeting category	other localisation
TranscriptId	352016
Track	FilteredModels1
ProteinId	351694

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351694	gene_14241	Tribonema minus UTEX_B_3156	gene	Contig_97 507852..510797 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_14241_1	exon_14241_1	Tribonema minus UTEX_B_3156	exon	Contig_97 507852..507911 +
exon_14241_2	exon_14241_2	Tribonema minus UTEX_B_3156	exon	Contig_97 508714..509184 +
exon_14241_3	exon_14241_3	Tribonema minus UTEX_B_3156	exon	Contig_97 509526..509962 +
exon_14241_4	exon_14241_4	Tribonema minus UTEX_B_3156	exon	Contig_97 510431..510797 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_14241	CDS_14241	Tribonema minus UTEX_B_3156	CDS	Contig_97 507852..507911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351694	Trimin1\|351694\|estExt_Genemark1.C_Ctg_970054	Tribonema minus UTEX_B_3156	polypeptide	Contig_97 507852..510797 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_97:507852..510797+
coding sequence from alignment at Contig_97:507852..510797+

spliced messenger RNA

>mRNA_14241 ID=mRNA_14241|Name=jgi.p|Trimin1|351694|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1335bp|location=Sequence derived from alignment at Contig_97:507852..510797+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCACATCCGCCTTCTCGGTGGGCGTCGTTGACGCCATGGAGGC
TGAGAAGAAGCTCAACATGTCGCTGGAAGACATCATCAAGGCGAGGCACG
AGGCGGACAAGCAGGCGCGGGACCCGCAGGGTGGCGGTGGCGGCAGCGGC
AGCAGCGGCGGCGGCGGCGGCGGCAGCAAGCCCACCGCCGCCGAGAGGGC
CATCGGCCGCGCCGCCGCGCGCCGCGACGCGGCGCTCGCCTCCAAGCGCG
GCCTCCCCGCGCCGATGGACGTCGACGCGGTCGCGCAGAAGCGCGTGCAG
AAGCAGGTCGCGCGCCGCCTCGTGCACCAGCACCTCGCCTCCAAGGCCTC
CTCAGCGCTCAGCGCCGGTGCCGCGCCCAAGACGAAGAGGGTTGGCGTGA
AGCAGCAGCAGCGGGAGGGCGGCGGCGGCGGCGGCGGCAGCGTGAGCGCG
GGCGGCGGCATGGTCGCCGACAGGGCCGTCGGCGCTGTCGTGAAGCAGCC
CAAGAGCGTACGCGTGGCGGCGAAAGTGAAGGCCGGGTCCGCCAACGCGG
CACTCAGAGCGCGCGCCGCCGCTATCGCCGCCGCCGCCGCTGCCGCCGCC
GCTGCGGACGTGCAGCAGCGGGCCCGCGCGCTGCGCCCGCAGCAGCTGCG
CAAGAACGCTGCGCCGGTGCCGCCGCCGCAGCAGCAGCAGCGGGGCGCCG
ACGACTACTTCAACAACAACAACCTCAACAGCGACAACTTCAACGACGGG
TCGCGCATGCGCGCCTCGACGGCGGCGGCGTTCCAGTTTGCGGCGCCTGC
GCCCGCGGCAGCGCGGCAGCACGCCAAGCGCGTGGCGGCGATGGCGGCGG
CGCTGGAGCAGCAGACGGCGGAGTGGCGGCAGCAGCGGCGCAACCGGCCG
AAGTGCAGGGTGGAGCTGCAGGGCGGCGTGCGGTCCATGGCGGCGCCGAG
CGCTGCTGACGCGGGCAGCAGCAGTGGCGACCGCGCCGTGCGCAAGCGCG
TCGCCGCCGCCGCCGCCAGCGCGCGCGCGCATGCGCAGCAGCAGACCGCC
GTGCAGCGCCGCGCCGCGCAGCTCGCCGAGCGCCGCGGCTTCGCGGCGAA
GACGCTGTCGGCGTTGCTGCCGCCGCCGCCGCTGCCGCGCGCTTCACCCG
CGGGGCGGAAGCAGGGGAAGCGGCGCGCGCTGACGGCCATGTCGCTGGCG
CAGGCGGGCGCGCGGCGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGCGGG
AGGCGCGTCGCCGCAGCAGCAGAAGCAGCAGCAGCGCGCCAAGGGGAAGA
AGAAGGGGGCGGCGCCGGCGGCGCGCCGCGGCTGA

protein sequence of jgi.p|Trimin1|351694

>Trimin1|351694|estExt_Genemark1.C_Ctg_970054 ID=Trimin1|351694|estExt_Genemark1.C_Ctg_970054|Name=jgi.p|Trimin1|351694|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=445bp
MATTSAFSVGVVDAMEAEKKLNMSLEDIIKARHEADKQARDPQGGGGGSG
SSGGGGGGSKPTAAERAIGRAAARRDAALASKRGLPAPMDVDAVAQKRVQ
KQVARRLVHQHLASKASSALSAGAAPKTKRVGVKQQQREGGGGGGGSVSA
GGGMVADRAVGAVVKQPKSVRVAAKVKAGSANAALRARAAAIAAAAAAAA
AADVQQRARALRPQQLRKNAAPVPPPQQQQRGADDYFNNNNLNSDNFNDG
SRMRASTAAAFQFAAPAPAAARQHAKRVAAMAAALEQQTAEWRQQRRNRP
KCRVELQGGVRSMAAPSAADAGSSSGDRAVRKRVAAAAASARAHAQQQTA
VQRRAAQLAERRGFAAKTLSALLPPPPLPRASPAGRKQGKRRALTAMSLA
QAGARRGGSSGGGGGAGGASPQQQKQQQRAKGKKKGAAPAARRG*

mRNA from alignment at Contig_97:507852..510797+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14241 ID=mRNA_14241|Name=jgi.p|Trimin1|351694|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2946bp|location=Sequence derived from alignment at Contig_97:507852..510797+ (Tribonema minus UTEX_B_3156 )
ATGGCTACCACATCCGCCTTCTCGGTGGGCGTCGTTGACGCCATGGAGGC
TGAGAAGAAGGTCAGTACATGGAGCGCCGGACCACCGGCTTTCGCAGCTT
GCCTTGGAGCCCCAGGCGTCGTTACCCCCCCTTGGATCATCTACCCGTCA
TGATGGACTTCCTTCTCGTTGGGAGAGTGATACTTAAGGCGTCCACTGTT
GGCGGTGCTATACGTTGGCGTATGATCGACGAGACGTCTATCAGTCGCAG
CCCGGCAGCTATACCAGCGCTGTTGTGGAGTATCCCTACTGAACATACCT
TCTGTTGGAGCCGAAGGCGCGCACGGCAGCCGGCCCGAGGTCTTCCAGTC
CGAAAGCGAGCACAGCGCAAGCAAGATCTTCAGCACCAGCGACACCTCGA
TGATAGCTTGCGATGCCTGCCCTGCAGCAGTATGCGGAGCGCCACTCTGC
TTTATTGTGGCGGGTGGCCCATCTGGACCTCAACCTCCGAAGAAAGCGGA
TACAAGTGCCTGTACTGCCCTGCACATGGCCAACTTTGAGCTATTGCTGC
TCTGCACTTGATGCTCCGAGAGCGCCAAAGCCTGCTTTGACATAATGGAG
CACTCGGCGTGCGTCTGGGGGGCTCGCTAGCGGACGTGACCAAGCAAGCA
ATCCGGGGTCCTGTCTGTGCTACTTGCGGCGCAAGGCTCGCTACAATGAG
CGGGCGTGGCACTGGGACAGGATTGCGCCACCTGGCGCCGACAGACCCCC
TCCCCTCCTTCGGTGACGGTGCCCCAGGCTTGGCTTCAACGACGCCCCCT
TGCACCCCCCCCCCCTTTGCCTTGCTGCACTGTTCGTACCCCCCCGCAAC
CCCCCCCCGCAGCTCAACATGTCGCTGGAAGACATCATCAAGGCGAGGCA
CGAGGCGGACAAGCAGGCGCGGGACCCGCAGGGTGGCGGTGGCGGCAGCG
GCAGCAGCGGCGGCGGCGGCGGCGGCAGCAAGCCCACCGCCGCCGAGAGG
GCCATCGGCCGCGCCGCCGCGCGCCGCGACGCGGCGCTCGCCTCCAAGCG
CGGCCTCCCCGCGCCGATGGACGTCGACGCGGTCGCGCAGAAGCGCGTGC
AGAAGCAGGTCGCGCGCCGCCTCGTGCACCAGCACCTCGCCTCCAAGGCC
TCCTCAGCGCTCAGCGCCGGTGCCGCGCCCAAGACGAAGAGGGTTGGCGT
GAAGCAGCAGCAGCGGGAGGGCGGCGGCGGCGGCGGCGGCAGCGTGAGCG
CGGGCGGCGGCATGGTCGCCGACAGGGCCGTCGGCGCTGTCGTGAAGCAG
CCCAAGAGCGTACGCGTGGCGGCGAAAGTGAAGGTGAGCGCTGCTGCTGC
CGCCCGTCGAGAGCTGCTGCCTTGCCGCGGTGCGCGCCGCCGCGCCTGCG
GGAGGTCTGCAGCGGCAGAGCGCCTGACGTGAGCGAAAAGAGCCACAGAC
GCATGCACGGGCGGTGATTGCAGCGTTCGCGCGCCATTGCTTCTTGGCGT
GCTGATATCCGCAGCTGCGTGTGGCTCCATCGATCTCATGCGTACGACGT
GGGCGCATCAGCATCAGCTTTCAATTGCTCGATAACGTCATAGAGCTGTA
ACACAGGCCCCAGCTGACGTGGAGTTGTAGATCTGACACCCGATGGCCCC
TTCGCTGTGCACACGCCACTCCAGGCCGGGTCCGCCAACGCGGCACTCAG
AGCGCGCGCCGCCGCTATCGCCGCCGCCGCCGCTGCCGCCGCCGCTGCGG
ACGTGCAGCAGCGGGCCCGCGCGCTGCGCCCGCAGCAGCTGCGCAAGAAC
GCTGCGCCGGTGCCGCCGCCGCAGCAGCAGCAGCGGGGCGCCGACGACTA
CTTCAACAACAACAACCTCAACAGCGACAACTTCAACGACGGGTCGCGCA
TGCGCGCCTCGACGGCGGCGGCGTTCCAGTTTGCGGCGCCTGCGCCCGCG
GCAGCGCGGCAGCACGCCAAGCGCGTGGCGGCGATGGCGGCGGCGCTGGA
GCAGCAGACGGCGGAGTGGCGGCAGCAGCGGCGCAACCGGCCGAAGTGCA
GGGTGGAGCTGCAGGGCGGCGTGCGGTCCATGGCGGCGCCGAGCGCTGCT
GACGCGGGCAGGTATGTATGTATGCCACGTGGCAATGACATGTTGATGTT
GTCCGTCGATTGTCCATGCAGTGTCTCTTTGTAACAGTGCGTCGCACTCC
ATCTGACACGTTGTGTCCTTCATTCTACATGCATTGTGTCGTTTCGTGCC
GAGGGCGTCTGACTCTATCTGTAGCAAGTGCCAGAGCAGGCTAGCGAGGT
GCGTGGCGAGCACACCGTTTTGAAATGCGACAGTCGAGAAGTCCGCTGCG
TGAGGTGCCACTTCGAACAGAATCTGGTTGTCACACCACCCTCCAAGAAG
TCATGCGCGTCTTGCTGGCACCATACCGGCGCAACCCACTGGTGTCTTCG
CCCAGCGCGTACCGCCATAGCTACTGCTGCCGCAGCGGCTGTGTTTCGCG
CATTTATAGCACCAGCATGCATTTCGTTGCCTGTGTATTCACCCGCTGAG
CATCACCACCACCCGCATCGCCTCCGCAGCAGCAGTGGCGACCGCGCCGT
GCGCAAGCGCGTCGCCGCCGCCGCCGCCAGCGCGCGCGCGCATGCGCAGC
AGCAGACCGCCGTGCAGCGCCGCGCCGCGCAGCTCGCCGAGCGCCGCGGC
TTCGCGGCGAAGACGCTGTCGGCGTTGCTGCCGCCGCCGCCGCTGCCGCG
CGCTTCACCCGCGGGGCGGAAGCAGGGGAAGCGGCGCGCGCTGACGGCCA
TGTCGCTGGCGCAGGCGGGCGCGCGGCGCGGCGGCAGCAGCGGCGGCGGC
GGCGGCGCGGGAGGCGCGTCGCCGCAGCAGCAGAAGCAGCAGCAGCGCGC
CAAGGGGAAGAAGAAGGGGGCGGCGCCGGCGGCGCGCCGCGGCTGA

Coding sequence (CDS) from alignment at Contig_97:507852..510797+

>mRNA_14241 ID=mRNA_14241|Name=jgi.p|Trimin1|351694|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1335bp|location=Sequence derived from alignment at Contig_97:507852..510797+ (Tribonema minus UTEX_B_3156 )
ATGGCTACCACATCCGCCTTCTCGGTGGGCGTCGTTGACGCCATGGAGGC
TGAGAAGAAGCTCAACATGTCGCTGGAAGACATCATCAAGGCGAGGCACG
AGGCGGACAAGCAGGCGCGGGACCCGCAGGGTGGCGGTGGCGGCAGCGGC
AGCAGCGGCGGCGGCGGCGGCGGCAGCAAGCCCACCGCCGCCGAGAGGGC
CATCGGCCGCGCCGCCGCGCGCCGCGACGCGGCGCTCGCCTCCAAGCGCG
GCCTCCCCGCGCCGATGGACGTCGACGCGGTCGCGCAGAAGCGCGTGCAG
AAGCAGGTCGCGCGCCGCCTCGTGCACCAGCACCTCGCCTCCAAGGCCTC
CTCAGCGCTCAGCGCCGGTGCCGCGCCCAAGACGAAGAGGGTTGGCGTGA
AGCAGCAGCAGCGGGAGGGCGGCGGCGGCGGCGGCGGCAGCGTGAGCGCG
GGCGGCGGCATGGTCGCCGACAGGGCCGTCGGCGCTGTCGTGAAGCAGCC
CAAGAGCGTACGCGTGGCGGCGAAAGTGAAGGCCGGGTCCGCCAACGCGG
CACTCAGAGCGCGCGCCGCCGCTATCGCCGCCGCCGCCGCTGCCGCCGCC
GCTGCGGACGTGCAGCAGCGGGCCCGCGCGCTGCGCCCGCAGCAGCTGCG
CAAGAACGCTGCGCCGGTGCCGCCGCCGCAGCAGCAGCAGCGGGGCGCCG
ACGACTACTTCAACAACAACAACCTCAACAGCGACAACTTCAACGACGGG
TCGCGCATGCGCGCCTCGACGGCGGCGGCGTTCCAGTTTGCGGCGCCTGC
GCCCGCGGCAGCGCGGCAGCACGCCAAGCGCGTGGCGGCGATGGCGGCGG
CGCTGGAGCAGCAGACGGCGGAGTGGCGGCAGCAGCGGCGCAACCGGCCG
AAGTGCAGGGTGGAGCTGCAGGGCGGCGTGCGGTCCATGGCGGCGCCGAG
CGCTGCTGACGCGGGCAGCAGCAGTGGCGACCGCGCCGTGCGCAAGCGCG
TCGCCGCCGCCGCCGCCAGCGCGCGCGCGCATGCGCAGCAGCAGACCGCC
GTGCAGCGCCGCGCCGCGCAGCTCGCCGAGCGCCGCGGCTTCGCGGCGAA
GACGCTGTCGGCGTTGCTGCCGCCGCCGCCGCTGCCGCGCGCTTCACCCG
CGGGGCGGAAGCAGGGGAAGCGGCGCGCGCTGACGGCCATGTCGCTGGCG
CAGGCGGGCGCGCGGCGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGCGGG
AGGCGCGTCGCCGCAGCAGCAGAAGCAGCAGCAGCGCGCCAAGGGGAAGA
AGAAGGGGGCGGCGCCGGCGGCGCGCCGCGGCTGA