mRNA_5074 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174745
Unique NamemRNA_5074
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A836CMZ0_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ0_9STRA)

HSP 1 Score: 596 bits (1537), Expect = 1.340e-215
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 
Query:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA 876
            MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA
Sbjct:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA 292
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A836CNX1_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX1_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 3.400e-147
Identity = 199/292 (68.15%), Postives = 240/292 (82.19%), Query Frame = 1 
Query:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA 876
            MI T GP++DKLLETNAARL+KF  ++A + +K   LP S+GGRRYG +KQK D+RDY FVA+ R S+P  VDLR+TG + PVL+QGSAGTCSAHAAA+ALR+LLRKE +QDFPPSRLF+YY TRV +EG+SP  DSGC LRDV +A+  +H CNERYM Y   +I E+PPALAVANARLHTTF YRAV+Q+LSAL+GALA+GYPV+VG QVY++FESEEVA TG VPMP+  E+CLGGHA LL+ Y+D T+TFTL NSWG WGQ+GFF+LPY YL DT LA DFW  + FA
Sbjct:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA 292
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A836CN22_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN22_9STRA)

HSP 1 Score: 407 bits (1047), Expect = 5.890e-141
Identity = 188/291 (64.60%), Postives = 239/291 (82.13%), Query Frame = 1 
Query:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            MI T GPLID+LL  NAA+L K  +++A + +K  +LP S GG+RYG +KQK D RD+ FV++ ++SIP  VDLR+TGF+ P ++QG AGTCSAHAA++ALR+L+RKE +QDF PSRLF+Y+T+RV +EG++P  D+GC LRDV +AL  +H CNERYM YSDT+I E PPALAVANARLHTTF YRAV+Q+LSAL+ ALA+GYPVIVGIQVY++FES++VA TG VPMPS  E+CLGGHAVL V + D+T+TFTL NSWG+WGQ+GFF+LPYDYL +  LA DFW +T F
Sbjct:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGF 291
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A836CEQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ3_9STRA)

HSP 1 Score: 367 bits (943), Expect = 1.170e-125
Identity = 173/248 (69.76%), Postives = 204/248 (82.26%), Query Frame = 1 
Query:  133 RYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGE-WGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            RYG +KQK D RDY FVA+ R S+P  VDLR+TG++ PV++QGSAGTCSAHA A+ALR+LLRKE +QDFPPSRLF+YY TRV +EG+SP  DSGC LRDV +A+  +H CNERYM Y DT+I E+PPALAVANARLHTTF YRAV+Q+LSAL+GALA+GYPV+VGIQVY +FE+EEVA TGVVPMP+  E+CLGGHAV LVA++D TRTFTL NSW   WGQ GFF L YDYL +  LA DFW  T F
Sbjct:   10 RYGLVKQKPDDRDYQFVAASRKSLPAAVDLRTTGYVPPVMDQGSAGTCSAHATASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMEYDDTKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVVVGIQVYDSFETEEVARTGVVPMPAEGEQCLGGHAVYLVAFEDATRTFTLCNSWSSAWGQGGFFKLSYDYLTNPDLACDFWMTTGF 257
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A835Z842_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z842_9STRA)

HSP 1 Score: 314 bits (804), Expect = 3.770e-104
Identity = 155/282 (54.96%), Postives = 199/282 (70.57%), Query Frame = 1 
Query:   34 LLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFR-NSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWG-EWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            LL+T        +  E  +   PA       GR++   +Q  D RD  F ++ +  ++P  VDLR+TGF+ PVL+QG AGTCSAHA+A AL YLLR+E V DF P+RL++YYTTRV +EGI    DSGCVLRDVC+A++K+H  +ER+  YSD +I+ERP A+AVANARLH T  Y AV QT  AL+ ALA  YPV++GIQV+++FES+ VA TGVVPMP   E+CLGGHAV +V YDD TRTFTL NSW  +WG  GFF+LPY+Y++D+ LA DFW    F
Sbjct:    2 LLKTARTAANHAKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLF 283
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A835YYL4_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL4_9STRA)

HSP 1 Score: 307 bits (786), Expect = 2.650e-101
Identity = 148/250 (59.20%), Postives = 188/250 (75.20%), Query Frame = 1 
Query:  130 RRYGTIKQKEDSRDYSFVASFR-NSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWG-EWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            R++   +Q  D RD  F ++ +  ++P  VDLR+TGF+ PVL+QG AGTCSAHA+A AL YLLR+E V DF P+RL++YYTTRV +EG     DSGCVLRDVC+A++K+H  +ERY  YSD +I+ERP A+AVANARLH T  Y AV QT  AL+ ALA  YPV++GIQV+++FES++VA TGVVPMP   E+CLGGHAV +V YDD TRTFTL NSW  +WG  GFF+LPY+Y++D  LA DFW    F
Sbjct:   42 RKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGTPAFDDSGCVLRDVCKAIKKYHVPDERYEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDKVAQTGVVPMPQEGEQCLGGHAVDVVGYDDVTRTFTLMNSWSTQWGDSGFFTLPYEYVLDPSLASDFWTFQLF 291
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA)

HSP 1 Score: 296 bits (758), Expect = 9.020e-97
Identity = 144/251 (57.37%), Postives = 185/251 (73.71%), Query Frame = 1 
Query:  127 GRRYGTIKQKEDSRDYSFVASFRNS-IPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWG-EWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            GR+Y    Q+ DSRD  F ++   + +P  VDLR++GF+ PVL+Q SAGTCSAHA+A AL YLL++E V DF P+RL++YYTTRV +EG     DSGCVLRDV +A++ +H  +E+Y  YSD +I++RP A+AVANARLHTT  YRAV QT   L+GALA G+PV++GIQVY++FES+EVA TG VPMP   EECLG HA L + +DD TR F L NSWG  +G  GFF+LPY+Y++D  LA DFW    F
Sbjct:   61 GRKYTLRLQEPDSRDLVFTSTINGADMPLSVDLRTSGFMPPVLDQQSAGTCSAHASANALHYLLKREKVADFSPARLYIYYTTRVYVEGTPATEDSGCVLRDVGKAIKTYHVPDEKYEPYSDKKISQRPSAMAVANARLHTTLKYRAVAQTEHDLKGALAAGFPVMIGIQVYESFESDEVAATGEVPMPEDGEECLGAHATLCIGFDDATRKFKLMNSWGVAFGDKGFFTLPYEYVLDPNLASDFWTFKVF 311
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A835ZGP7_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.260e-92
Identity = 135/207 (65.22%), Postives = 155/207 (74.88%), Query Frame = 1 
Query:  256 QGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGE-WGQDGFFSLPYDYLIDTGLAGDFWCLTRF 873
            QG AGTCSAHAAA  L YLLRKE V DFPPSRLF+YYT RV +EG     DSGCVLRDVC+A+ ++H  +E+Y  YSD +I +RP ALAVANAR H    YRAV QT + L+GALA GYPV+VGIQVY  FES+EVA TG   +P  +E CLGGHAV+L AYDD  R FTL NSW   WG+ GFF+LPYDYL+D  LAGDFWC T F
Sbjct:    1 QGRAGTCSAHAAANCLHYLLRKEGVADFPPSRLFIYYTARVYVEGTPATEDSGCVLRDVCKAVARYHAPDEKYEPYSDARIAQRPSALAVANARKHCALQYRAVPQTEADLKGALAAGYPVMVGIQVYAGFESDEVARTGEAQLPGPDEACLGGHAVVLTAYDDSLRRFTLMNSWSSAWGRGGFFTLPYDYLLDPQLAGDFWCFTAF 207
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A3B8JF38_9CYAN (Peptidase n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JF38_9CYAN)

HSP 1 Score: 211 bits (538), Expect = 2.450e-64
Identity = 111/246 (45.12%), Postives = 152/246 (61.79%), Query Frame = 1 
Query:  136 YGTIKQKEDSRD--YSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWG-EWGQDGFFSLPYDYLIDTGLAGDFWCL 864
            YG I  + DSRD  YS       ++P K+DLR+     PV +QGS G+C+A A  AA  +   K+ + +F PSRLF YYTTR ++EG   E DSG  LR+  +A+ KF  C E    Y   ++T +P       A  HT  +Y  V QTL+ ++G LA GY    G+ VY++FE E+VANTGVV MPS +E+ +GGHAVL+V YDD  + F ++NSWG EWG  G F++PY Y+++  LA DFW +
Sbjct:    8 YGWIPDRPDSRDIRYSAPQPVVKNLPPKIDLRTK--FPPVYSQGSIGSCTAQAVCAAFHFCKMKQKLYNFAPSRLFTYYTTR-DLEGTINE-DSGATLRNTMKAINKFGACPESIWPYELRRLTLKPTPTCYDTASRHTAVSYSQVTQTLTQMKGCLAEGYAFAFGMLVYESFEGEQVANTGVVQMPSPDEQQVGGHAVLVVGYDDSQQRFIVRNSWGAEWGMKGHFTMPYQYILNADLATDFWTI 249
[Close]
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Match: A0A538N8L2_9ACTN (Peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538N8L2_9ACTN)

HSP 1 Score: 208 bits (529), Expect = 6.700e-63
Identity = 110/251 (43.82%), Postives = 150/251 (59.76%), Query Frame = 1 
Query:  133 RYGTIKQKEDSRDYSFVASFR--NSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGE-WGQDGFFSLPYDYLIDTGLAGDFWCLTRFA 876
            RYG I    D RD+ + A      ++P  VDLR+      V +QG  G+C+A+A AAA  + L K+ + DF PSRLF+YY  R  IEG + + DSG ++RD  +++ K   C E    Y   +    P   A   AR H   +Y+ + Q L+ +RG LA GYP + G QVY++FES+EVA TGV P+P   E+ LGGHAVL V YDD +  F ++NSWG  WG DG+F+LPY YL +  LA DFW + + A
Sbjct:   11 RYGWIPDLPDHRDHIYGAPLPVLAALPPSVDLRAA--CPKVYDQGQLGSCTANAIAAAFEFDLAKQALADFMPSRLFIYYNER-RIEG-TVDSDSGAMIRDGIKSVSKQGVCAEDTWPYDIAKFAAEPVGPAYTQARGHRVLSYQRIPQVLNQMRGCLAHGYPFVFGFQVYESFESKEVAQTGVAPLPGTTEQALGGHAVLCVGYDDASARFLVRNSWGTGWGMDGYFTLPYTYLTERNLASDFWAIVKVA 257
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174745 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMZ0_9STRA1.340e-215100.00Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CNX1_9STRA3.400e-14768.15Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CN22_9STRA5.890e-14164.60Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CEQ3_9STRA1.170e-12569.76Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835Z842_9STRA3.770e-10454.96Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835YYL4_9STRA2.650e-10159.20Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CBQ3_9STRA9.020e-9757.37Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835ZGP7_9STRA2.260e-9265.22Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A3B8JF38_9CYAN2.450e-6445.12Peptidase n=1 Tax=Cyanobacteria bacterium UBA8553 ... [more]
A0A538N8L2_9ACTN6.700e-6343.82Peptidase n=1 Tax=Actinomycetia bacterium TaxID=18... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:242762..243640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174745|e_gw1.117.78.1
DescriptionPFAM Papain family cysteine protease
COG categoryO
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG4870@1|root,COG4870@2|Bacteria,1G85R@1117|Cyanobacteria,1H9NA@1150|Oscillatoriales
Evalue8.29e-62
Seed ortholog1173027.Mic7113_6379
Hectar predicted targeting categoryother localisation
TranscriptId175067
TrackFilteredModels1
ProteinId174745
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174745gene_5074Tribonema minus UTEX_B_3156 geneContig_117 242762..243640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5074_1exon_5074_1Tribonema minus UTEX_B_3156 exonContig_117 242762..243640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5074CDS_5074Tribonema minus UTEX_B_3156 CDSContig_117 242762..243640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174745Trimin1|174745|e_gw1.117.78.1Tribonema minus UTEX_B_3156 polypeptideContig_117 242762..243640 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5074 ID=mRNA_5074|Name=jgi.p|Trimin1|174745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_117:242762..243640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAGCACATCTGGGCCGCTGATCGATAAATTGCTGGAGACGAACGC
TGCGCGGCTAGAGAAGTTTGAGCGGACGGAAGCGGGAGATGCTAAGAAAC
CTGCACACCTGCCCGCGTCCGCAGGCGGCAGGCGCTACGGGACGATCAAG
CAGAAAGAGGACAGCAGAGACTATTCGTTCGTGGCGAGCTTCAGAAACAG
CATCCCCCAGAAAGTTGACCTCCGATCGACAGGTTTTCTTGGCCCAGTGC
TCAACCAGGGCAGCGCTGGGACTTGCTCCGCGCATGCTGCTGCAGCCGCG
CTGCGGTACCTGCTGCGCAAAGAGCACGTTCAGGATTTCCCCCCCTCCCG
CTTGTTCGTGTACTACACCACCCGTGTCAACATCGAAGGCATTTCCCCAG
AAATTGACTCAGGCTGCGTGCTGAGAGACGTCTGTCGCGCGCTGCAAAAG
TTCCACACGTGCAACGAAAGATACATGGCGTACAGTGACACACAGATCAC
AGAGCGGCCGCCGGCGCTGGCAGTGGCGAACGCGCGGCTGCACACGACCT
TCGCGTACCGCGCGGTAGAGCAGACGCTCAGCGCACTCAGAGGGGCACTG
GCAACGGGGTACCCTGTAATAGTTGGTATACAAGTTTACCAAACCTTTGA
ATCGGAGGAAGTAGCAAATACAGGTGTCGTGCCCATGCCCTCACATAATG
AAGAATGCCTGGGCGGTCACGCCGTGCTGCTTGTGGCGTATGACGACGAA
ACACGTACTTTCACCCTACAAAACAGCTGGGGAGAGTGGGGTCAGGACGG
TTTCTTCAGCCTCCCCTACGACTATCTGATCGACACAGGGCTTGCAGGTG
ACTTTTGGTGCTTGACCCGGTTTGCATGA
back to top

protein sequence of jgi.p|Trimin1|174745

>Trimin1|174745|e_gw1.117.78.1 ID=Trimin1|174745|e_gw1.117.78.1|Name=jgi.p|Trimin1|174745|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIK
QKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAA
LRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQK
FHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGAL
ATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDE
TRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA*
back to top

mRNA from alignment at Contig_117:242762..243640-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5074 ID=mRNA_5074|Name=jgi.p|Trimin1|174745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_117:242762..243640- (Tribonema minus UTEX_B_3156 )
ATGATCAGCACATCTGGGCCGCTGATCGATAAATTGCTGGAGACGAACGC
TGCGCGGCTAGAGAAGTTTGAGCGGACGGAAGCGGGAGATGCTAAGAAAC
CTGCACACCTGCCCGCGTCCGCAGGCGGCAGGCGCTACGGGACGATCAAG
CAGAAAGAGGACAGCAGAGACTATTCGTTCGTGGCGAGCTTCAGAAACAG
CATCCCCCAGAAAGTTGACCTCCGATCGACAGGTTTTCTTGGCCCAGTGC
TCAACCAGGGCAGCGCTGGGACTTGCTCCGCGCATGCTGCTGCAGCCGCG
CTGCGGTACCTGCTGCGCAAAGAGCACGTTCAGGATTTCCCCCCCTCCCG
CTTGTTCGTGTACTACACCACCCGTGTCAACATCGAAGGCATTTCCCCAG
AAATTGACTCAGGCTGCGTGCTGAGAGACGTCTGTCGCGCGCTGCAAAAG
TTCCACACGTGCAACGAAAGATACATGGCGTACAGTGACACACAGATCAC
AGAGCGGCCGCCGGCGCTGGCAGTGGCGAACGCGCGGCTGCACACGACCT
TCGCGTACCGCGCGGTAGAGCAGACGCTCAGCGCACTCAGAGGGGCACTG
GCAACGGGGTACCCTGTAATAGTTGGTATACAAGTTTACCAAACCTTTGA
ATCGGAGGAAGTAGCAAATACAGGTGTCGTGCCCATGCCCTCACATAATG
AAGAATGCCTGGGCGGTCACGCCGTGCTGCTTGTGGCGTATGACGACGAA
ACACGTACTTTCACCCTACAAAACAGCTGGGGAGAGTGGGGTCAGGACGG
TTTCTTCAGCCTCCCCTACGACTATCTGATCGACACAGGGCTTGCAGGTG
ACTTTTGGTGCTTGACCCGGTTTGCATGA
back to top

Coding sequence (CDS) from alignment at Contig_117:242762..243640-

>mRNA_5074 ID=mRNA_5074|Name=jgi.p|Trimin1|174745|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_117:242762..243640- (Tribonema minus UTEX_B_3156 )
ATGATCAGCACATCTGGGCCGCTGATCGATAAATTGCTGGAGACGAACGC
TGCGCGGCTAGAGAAGTTTGAGCGGACGGAAGCGGGAGATGCTAAGAAAC
CTGCACACCTGCCCGCGTCCGCAGGCGGCAGGCGCTACGGGACGATCAAG
CAGAAAGAGGACAGCAGAGACTATTCGTTCGTGGCGAGCTTCAGAAACAG
CATCCCCCAGAAAGTTGACCTCCGATCGACAGGTTTTCTTGGCCCAGTGC
TCAACCAGGGCAGCGCTGGGACTTGCTCCGCGCATGCTGCTGCAGCCGCG
CTGCGGTACCTGCTGCGCAAAGAGCACGTTCAGGATTTCCCCCCCTCCCG
CTTGTTCGTGTACTACACCACCCGTGTCAACATCGAAGGCATTTCCCCAG
AAATTGACTCAGGCTGCGTGCTGAGAGACGTCTGTCGCGCGCTGCAAAAG
TTCCACACGTGCAACGAAAGATACATGGCGTACAGTGACACACAGATCAC
AGAGCGGCCGCCGGCGCTGGCAGTGGCGAACGCGCGGCTGCACACGACCT
TCGCGTACCGCGCGGTAGAGCAGACGCTCAGCGCACTCAGAGGGGCACTG
GCAACGGGGTACCCTGTAATAGTTGGTATACAAGTTTACCAAACCTTTGA
ATCGGAGGAAGTAGCAAATACAGGTGTCGTGCCCATGCCCTCACATAATG
AAGAATGCCTGGGCGGTCACGCCGTGCTGCTTGTGGCGTATGACGACGAA
ACACGTACTTTCACCCTACAAAACAGCTGGGGAGAGTGGGGTCAGGACGG
TTTCTTCAGCCTCCCCTACGACTATCTGATCGACACAGGGCTTGCAGGTG
ACTTTTGGTGCTTGACCCGGTTTGCATGA
back to top