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Homology
BLAST of jgi.p|Trimin1|339502 vs. uniprot
Match: A0A836C716_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C716_9STRA) HSP 1 Score: 737 bits (1902), Expect = 2.250e-267 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 3
Query: 63 MAAPPMPSAVMVKLYGIEEQVLPTTVKLHLLNAISLLQGAEQRKARGLAGRLEEPARLLAALSLASSQYASNSATGDETEALQSLLDCGMRSFFARLSLAGSRGSNGAFAPMHGMFASTTSNKLDVDGVLAEDAKHGRAVMEQGDGSSSSRNMCGFDGVHERIAELVALGLVAGDKEEKAHALLPNGARLDSDDMDALQSALSCTLGVVLARMMSEERKTRYSNAVTAHGARPATTPATQGIGAMVEKLLTVVSSSGDGARSLFPDLDAREGCFAASKYRDILVARKAELTALMEMMSQVQGLKRTIVDAQPAPMSPLPPPKRAALRSAAHLALKCNAALSSRGDSARSDRARGGVAEFRKALSVATEATECSDGDEQASPSLETNEFTGNRVLVI 1250
MAAPPMPSAVMVKLYGIEEQVLPTTVKLHLLNAISLLQGAEQRKARGLAGRLEEPARLLAALSLASSQYASNSATGDETEALQSLLDCGMRSFFARLSLAGSRGSNGAFAPMHGMFASTTSNKLDVDGVLAEDAKHGRAVMEQGDGSSSSRNMCGFDGVHERIAELVALGLVAGDKEEKAHALLPNGARLDSDDMDALQSALSCTLGVVLARMMSEERKTRYSNAVTAHGARPATTPATQGIGAMVEKLLTVVSSSGDGARSLFPDLDAREGCFAASKYRDILVARKAELTALMEMMSQVQGLKRTIVDAQPAPMSPLPPPKRAALRSAAHLALKCNAALSSRGDSARSDRARGGVAEFRKALSVATEATECSDGDEQASPSLETNEFTGNRVLVI
Sbjct: 1 MAAPPMPSAVMVKLYGIEEQVLPTTVKLHLLNAISLLQGAEQRKARGLAGRLEEPARLLAALSLASSQYASNSATGDETEALQSLLDCGMRSFFARLSLAGSRGSNGAFAPMHGMFASTTSNKLDVDGVLAEDAKHGRAVMEQGDGSSSSRNMCGFDGVHERIAELVALGLVAGDKEEKAHALLPNGARLDSDDMDALQSALSCTLGVVLARMMSEERKTRYSNAVTAHGARPATTPATQGIGAMVEKLLTVVSSSGDGARSLFPDLDAREGCFAASKYRDILVARKAELTALMEMMSQVQGLKRTIVDAQPAPMSPLPPPKRAALRSAAHLALKCNAALSSRGDSARSDRARGGVAEFRKALSVATEATECSDGDEQASPSLETNEFTGNRVLVI 396
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|339502|MIX48265_14_53 |
Hectar predicted targeting category | other localisation |
TranscriptId | 339824 |
Track | FilteredModels1 |
ProteinId | 339502 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13065 ID=mRNA_13065|Name=jgi.p|Trimin1|339502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1253bp|location=Sequence derived from alignment at Contig_96:364336..369537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GCGATAACGCGTGGTGCCAGAAGGCAGAACAGAGCGGGAGCAGATTGACT GCTAGTATCATCATGGCGGCGCCGCCAATGCCTTCCGCTGTCATGGTCAA GCTCTATGGGATTGAGGAGCAAGTCTTGCCAACGACGGTGAAGCTTCATC TGCTCAACGCCATTTCCCTGCTGCAGGGCGCTGAGCAGCGCAAAGCACGT GGTCTAGCCGGACGGCTCGAGGAGCCCGCTCGCCTGCTAGCCGCCCTCTC GCTGGCGTCATCGCAGTACGCGAGTAATTCTGCCACAGGCGACGAGACAG AGGCATTGCAATCCCTGCTCGACTGCGGCATGCGAAGCTTCTTCGCACGG CTGTCGCTGGCAGGCAGCAGGGGCAGCAACGGAGCGTTCGCTCCTATGCA TGGCATGTTTGCTTCCACCACGTCCAACAAGCTGGACGTCGATGGTGTCC TGGCGGAGGACGCCAAGCATGGCCGGGCTGTAATGGAGCAGGGAGATGGC AGCAGCAGCAGCAGGAACATGTGCGGATTTGACGGCGTGCATGAGCGAAT AGCGGAGCTGGTGGCACTGGGTTTGGTGGCAGGGGACAAAGAGGAAAAGG CGCACGCGCTGCTGCCCAATGGCGCGCGGTTGGACAGCGATGACATGGAC GCACTGCAAAGCGCGCTGAGCTGCACGCTCGGCGTCGTGTTGGCGCGCAT GATGTCCGAGGAGCGCAAGACTCGATACAGCAACGCCGTCACTGCGCACG GCGCACGGCCAGCGACGACACCGGCAACACAGGGTATTGGTGCCATGGTG GAAAAGCTGCTCACGGTAGTCAGCAGCTCGGGGGACGGAGCGCGTTCGCT GTTTCCTGACTTGGACGCTCGCGAGGGTTGCTTTGCTGCCTCCAAGTACC GGGACATACTGGTGGCGCGCAAGGCGGAGCTGACAGCCCTGATGGAGATG ATGTCACAGGTGCAAGGCCTCAAGCGCACCATAGTGGACGCGCAGCCGGC GCCCATGTCGCCGCTGCCGCCGCCAAAGCGCGCCGCGCTGCGCTCCGCAG CGCACCTCGCGCTCAAGTGCAACGCAGCGCTCAGCAGCCGCGGCGACAGC GCGCGCAGCGATCGTGCTCGCGGCGGCGTCGCCGAGTTCAGGAAGGCGCT GAGCGTTGCCACGGAGGCCACGGAGTGCAGCGACGGCGACGAACAGGCGT CGCCATCGCTGGAGACGAATGAGTTTACGGGCAACAGGGTGCTGGTCATC TGA back to topprotein sequence of jgi.p|Trimin1|339502 >Trimin1|339502|MIX48265_14_53 ID=Trimin1|339502|MIX48265_14_53|Name=jgi.p|Trimin1|339502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=397bp
MAAPPMPSAVMVKLYGIEEQVLPTTVKLHLLNAISLLQGAEQRKARGLAG RLEEPARLLAALSLASSQYASNSATGDETEALQSLLDCGMRSFFARLSLA GSRGSNGAFAPMHGMFASTTSNKLDVDGVLAEDAKHGRAVMEQGDGSSSS RNMCGFDGVHERIAELVALGLVAGDKEEKAHALLPNGARLDSDDMDALQS ALSCTLGVVLARMMSEERKTRYSNAVTAHGARPATTPATQGIGAMVEKLL TVVSSSGDGARSLFPDLDAREGCFAASKYRDILVARKAELTALMEMMSQV QGLKRTIVDAQPAPMSPLPPPKRAALRSAAHLALKCNAALSSRGDSARSD RARGGVAEFRKALSVATEATECSDGDEQASPSLETNEFTGNRVLVI* back to topmRNA from alignment at Contig_96:364336..369537- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13065 ID=mRNA_13065|Name=jgi.p|Trimin1|339502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5202bp|location=Sequence derived from alignment at Contig_96:364336..369537- (Tribonema minus UTEX_B_3156 ) GCGATAACGCGTGGTGCCAGAAGGCAGAACAGAGCGGGAGCAGATTGACT
GCTAGTATCATCATGGCGGCGCCGCCAATGCCTTCCGCTGTCATGGTCAA
GCTCTATGGGATTGAGGAGCAAGTCTTGCCAACGACGGTGAAGCTTCATC
TGCTCAACGCCATTTCCCTGCTGCAGGGCGCTGAGCAGCGCAAAGCACGT
GGTCTAGCCGGACGGTAAGCCTTGCAGAGTTGCTTGCTGTAACATCCGGT
TCACGGCCATTGCACACGCTAAAGCTCTCGTGCTGCGGTGCTGCTGTTGC
TGCTTTCGTTTCATTCAGGCTCGAGGAGCCCGCTCGCCTGCTAGCCGCCC
TCTCGCTGGCGTCATCGCAGTACGCGAGTAATTCTGCCACAGGCGACGAG
ACAGAGGCATTGCAATCCCTGCTCGACTGCGGCATGCGAAGCTTCTTCGC
ACGGCTGTCGCTGGCAGGCAGCAGGGGCAGCAACGGAGCGTTCGCTCCTA
TGCATGGCATGTTTGCTTCCACCACGTCCAACAAGCTGGACGTCGATGGT
GTCCTGGCGGAGGACGCCAAGCGTAGGGCATCAGCAGTGCCTTCCGAAAA
CGAGCAAACAGGAGAACCAGCATCTGCAGAAGCGGCCCCGCTGTGGCTGC
TTCCAGGTGTCCGGCACTGCTATGAGCAGGTAGGCACCACCTCCCGTACT
CCACAAACCAGTGCCTTGCTGCTTTGCTGCTGCTGCTGCTGCTGCTCAGC
AACATTATATATGCGGCGTTCATCTGGACCTTGCTGATCACTGTTAATGG
TGCTGTCTGCAGGTATTCTGCAATGAAATACGGGCTGCTGCGACGGCAAT
ATCAGACATGCGCACAGCATTCAGACAAGCTGTCTCAGCATTGGGAGACT
TGGACAAATCCTCAAAGTACGCTCTTCTCCCAGACTCTGCACTGTTGGAC
TGGCAAGGTACGCATCACACAAGTGCATGCACCTGCTCACAATGCACATA
TTCGTACAGGCAGCGATGCTGGTCAGGTCATTCAGAGTGTTAGTGTTCCT
GCGTATGATTCTCTTGCACGCTGTGTCAAACTGCATGTCCAAGCCGAATG
CACAGAACTGCAGCACTTACATCTACATTGGCTAATACGGTTCTGTTCGC
CTGTGTGTCTGCAGATGGCCGGGCTGTAATGGAGCAGGGAGATGGCAGCA
GCAGCAGCAGGAACATGTGCGGATTTGACGGCGTGCATGAGCGAATAGCG
GAGCTGGTGCGCTTGCAGGAGCAGTCATTGCTGCCCCCCATAGGTGAGCA
CAAGTTCTCATTGAGATGTCGGTCACCATAGCGTCAATTGATGCAAACCT
GGCTTCTGTCATGACTGGTGCTGGCTGAACAGTTGCCAAGAGTGTGCAAC
AGTATGCCACTAATCGTTTTGTTCAATGGTAGAATGTGTCCCATCTGACA
TGATGAGCAGCGTGAGAAAGTAGACCAGATACACGTGCAGCAAACATACG
ACACAAACAACCTGAGCCCAGCGGTCACGGTGGCAACCATGCAGCCATTC
TTACCGGACATGTCGCATTCGACGACTTTTGCATGCCAGCATGATACATG
AGGTCCATGTACACCTGTCAGCAAGGACAGTGTGTTTCCTTGTCAGCAAG
GGCAAAACCGCACTGAACATTATGCTCATGTTTCGGCAATGTCCTTGTGA
TATGACTTTGAGTTGCAGCAATGGAGTTGATTGAAAGCGCGGAGCGAGCA
GTGGGGGACATGGGATCGCAGCTGTCAATGGACGTGTTCAATCAGGTCAG
CTTCACATCAATCATGACACAGCACCGCTGTCAGTGTGTAAGCTGTAGTA
GTCAGCGCCGCTGTGAGTGTGTAATTGCAAGCCTCAGAAGCACTCAATGG
CTAGTTCAGAGCTACTATGTTGCTGCAATCACTGTCATATGTGGCCACGT
TTGATGTTTGTTGTACTTTGTGTGTACCGCATGGTGGTGTTGCACACCAT
ACCACCTTCATGCTCGCTAGACCTCTAGTACGCCTGACACCTGTCATGTC
AACTGTGCTGCCTCTGACAGTATGGCCCATACCACGGAAGTGCACTGACA
CACTGCCAATGCCGGGTGCCCATGCCCCACGCTGACACCACGCCACCTGC
ATTGTTCAACAGGCAATGGCCTCATTGCGGGAGGTCGTACGGGCAGATTC
GCTAATGCTGGTTGCGGAGCAGGTGGCACTGGGTTTGGTGGCAGGGGACA
AAGAGGAAAAGGCGCACGCGCTGCTGCCCAATGGCGCGCGGTTGGACAGG
TGAGAAAAATCACTGTCCTATGTATATACCGATGTTTAAAGATGTGCGTA
TGCTCCCTATGCTCCTAGTTACAAATGGTGGATGTGGCTGCTGTAGTGAT
GTTTTTTGACGTCACTAGGGTTTGCTAATGATGTCGCTGAAGTGGGAGTT
TGGCATTGGTTGCCTGTGTAACGACACAGGTCAGTACTTCAAGTTACCTT
TGAAACTTCAAGTGACGCTTTTGCACAACTCCAATTCTACCTCTGGCGGC
CACTCTGCATTGGCGCATGGTCATGAAAAGCGCTGTGTGCACGGGAGCGG
CCTGATGCACTCACTTCTTGCCTCTGAAGGTTGTCTGCGGCTTCAAAACA
TTGCCAACCTGGTTTGGCCTGATTCTGTTGCTAAGTATCTGACCCTCGAT
TACCAACTGAATGGATGCCCTGGATTACTGTTCTGATGCGGATTCCGAGA
ATCAAGTCAGTCCCTACCCTAGTTGTCTCTGTAGCTGCACAGTACATAAC
ACTAGTAGCAGCTTTAAATGGATCTCCATCCCGCACCAGCGTTACCAAGA
GCTCGAGGCATTCTGTCTGTATCGTTGATACCTCATATTGCATCATTGAG
GTAAGCACTCTTTTGCCATGCTGTCTCTTTCAACGTCACACATAAATGCA
ACACAGGCGTGCAATATGGCAAACTTGTACTTCCAAGTATGCCATTACAT
GCTGCTCCACATCATGAGGTGCCGCCAGCTATTGTTTGTTGCAGTAGAAT
GACGCCTGCCTCTCTTTTTCGTCCCTATCACAATCCACATTAGCTACATG
CAAAGTGTCCTTCCTGCTCACGGCTGTTTTTGCTTCCTCTGTGCTTCCCC
TCCCCCACCACCACCACAGCGATGACATGGACGCACTGCAAAGCGCGCTG
AGCTGCACGCTCGGCGTCGTGTTGGCGCGCATGATGTCCGAGGAGCGCAA
GACTCGATACAGCAACGCCGTCACTGCGCACGGCGCACGGCCAGCGACGA
CACCGGCAACACAGGGTACGATCATTACTAAGATGGCAGTAGTCACCAAA
TATAATGACCTTGCTGGCAGCGCAGTAAGAGTGCTTGCGTGCCTTGCGAC
ACAGGCACCTGCTCAGACTAGAGAGGGGTACGACAACTGCATCACCATAT
ACAGCGTGGAGAACGTTGACGCCCTGGGCATGCGCACCGGCGACAGAAAA
AGATAAGCTGGTGTCATCAGTGCAGTCAGTATGGGGGCTGCAGCGCATGC
AATGTGCAGAGCATCAGGCACAAGCAAGTGCGGCACACTGTAACAGCACA
CGGCAGAGGCGACAGCATCAACAAAGTGATGCTTGCAATGTCAGGCATTC
GAGGTGCAGATCTGTCAATCGCGCTTGAACCCAGTGAAGTGTATGCTGAT
CACGCATCATCCGTACACAACAGCTCGTAGCCTTCCACTCACAGCCAGCC
AGTAACAGAGACAATCCCCAGGTCGTGTGAGCTGACCCACCATGCGTTTG
ACCCACAACAGGTATTGGTGCCATGGTGGAAAAGCTGCTCACGGTAGTCA
GCAGCTCGGGGGACGGAGCGCGTTCGCTGTTTCCTGACTTGGACGCTCGC
GAGGGTTGCTTTGCTGCCTCCAAGTACCGGGACATACTGGTGGCGCGCAA
GGCGGAGCTGACAGCCCTGATGGAGATGATGTCACAGGTGTGTAGGGCAT
GTATGTATATGTACTGAAAGTATGCAGTATACATGCATGCGTGTATGCCT
GACTGACAGTGCAGCAGTGAGTGAGTGAAGTGCAAGCAAGGAGTGATCGT
GAATGCGCTTTGAGACACGCAAGTTGTCGCAAGATGCATTCAGGTTCTGG
TAGCAAGCTTGACATCCTCTCGCGCCCTACGCGAGAGTGATAACGAGTAC
AAGCAAGCATGGGCATGTGTTGTGAGCGATACGATGGTGCAATGGTCGGC
GTACTCTGCTGACACGGACCTTTTTAGATTTTGAGTCACCCAATGAGCAG
TGTGTTCTCTCAACACCCATACACTGATGGACCATACCACATGTGCACAC
GTTGTGCATGTGCGCGCTGCATCGGTCCCCAGCATTTGCCAGTGCAGGCA
TCACATAACCACTGATGCTGGATCAGGCACAGAGTCATAACCAGATTAGT
GAATGCGGGGAGCGGAAGCAGTAGTCTAGTAGACTATCTGGATGCATAGT
GACGAGTGGTGCACACCTCGGTCAGAGGCAATCGTGTCAACAAGGATGAC
ACAGGCAGCAATCATGCACAAAACACCATACGGTACTGATTTGTGGTGGC
AGCACCTGTATTTACTCACACCGGTCACACCATCACAGTCCTTGTGTCTT
TTGTATGGTGTGCCTTCCGTGTCCGTGCCTCCATCATGGTGCTTGCTCAA
ACTGCGTACAGCGACTGGATGGATGCTCGTAGGTTGTGACACCATCATTC
TGGTATTCACACATCAGGCAGCACTCGCTGGCAAAATACTGCTGATGTCC
GCACAAAGACCACATCACCACCACAATGGTGCACGTCAATCCCTTCCGTC
ACCCTCTCCAACGCACTACCCCCCCCCCCTACCCCTACCCCCCAATATAA
CGCCACAGGTGCAAGGCCTCAAGCGCACCATAGTGGACGCGCAGCCGGCG
CCCATGTCGCCGCTGCCGCCGCCAAAGCGCGCCGCGCTGCGCTCCGCAGC
GCACCTCGCGCTCAAGTGCAACGCAGCGCTCAGCAGCCGCGGCGACAGCG
CGCGCAGCGATCGTGCTCGCGGCGGCGTCGCCGAGTTCAGGAAGGCGCTG
AGCGTTGCCACGGAGGCCACGGAGTGCAGCGACGGCGACGAACAGGCGTC
GCCATCGCTGGAGACGAATGAGTTTACGGGCAACAGGGTGCTGGTCATCT
GA back to topCoding sequence (CDS) from alignment at Contig_96:364336..369537- >mRNA_13065 ID=mRNA_13065|Name=jgi.p|Trimin1|339502|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1191bp|location=Sequence derived from alignment at Contig_96:364336..369537- (Tribonema minus UTEX_B_3156 ) ATGGCGGCGCCGCCAATGCCTTCCGCTGTCATGGTCAAGCTCTATGGGAT TGAGGAGCAAGTCTTGCCAACGACGGTGAAGCTTCATCTGCTCAACGCCA TTTCCCTGCTGCAGGGCGCTGAGCAGCGCAAAGCACGTGGTCTAGCCGGA CGGCTCGAGGAGCCCGCTCGCCTGCTAGCCGCCCTCTCGCTGGCGTCATC GCAGTACGCGAGTAATTCTGCCACAGGCGACGAGACAGAGGCATTGCAAT CCCTGCTCGACTGCGGCATGCGAAGCTTCTTCGCACGGCTGTCGCTGGCA GGCAGCAGGGGCAGCAACGGAGCGTTCGCTCCTATGCATGGCATGTTTGC TTCCACCACGTCCAACAAGCTGGACGTCGATGGTGTCCTGGCGGAGGACG CCAAGCATGGCCGGGCTGTAATGGAGCAGGGAGATGGCAGCAGCAGCAGC AGGAACATGTGCGGATTTGACGGCGTGCATGAGCGAATAGCGGAGCTGGT GGCACTGGGTTTGGTGGCAGGGGACAAAGAGGAAAAGGCGCACGCGCTGC TGCCCAATGGCGCGCGGTTGGACAGCGATGACATGGACGCACTGCAAAGC GCGCTGAGCTGCACGCTCGGCGTCGTGTTGGCGCGCATGATGTCCGAGGA GCGCAAGACTCGATACAGCAACGCCGTCACTGCGCACGGCGCACGGCCAG CGACGACACCGGCAACACAGGGTATTGGTGCCATGGTGGAAAAGCTGCTC ACGGTAGTCAGCAGCTCGGGGGACGGAGCGCGTTCGCTGTTTCCTGACTT GGACGCTCGCGAGGGTTGCTTTGCTGCCTCCAAGTACCGGGACATACTGG TGGCGCGCAAGGCGGAGCTGACAGCCCTGATGGAGATGATGTCACAGGTG CAAGGCCTCAAGCGCACCATAGTGGACGCGCAGCCGGCGCCCATGTCGCC GCTGCCGCCGCCAAAGCGCGCCGCGCTGCGCTCCGCAGCGCACCTCGCGC TCAAGTGCAACGCAGCGCTCAGCAGCCGCGGCGACAGCGCGCGCAGCGAT CGTGCTCGCGGCGGCGTCGCCGAGTTCAGGAAGGCGCTGAGCGTTGCCAC GGAGGCCACGGAGTGCAGCGACGGCGACGAACAGGCGTCGCCATCGCTGG AGACGAATGAGTTTACGGGCAACAGGGTGCTGGTCATCTGA back to top
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